BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G43060.1
Length=898
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483408 jgi|Araly1|483408|fgenesh2_kg.4__2468__AT2G43060.1 1134 0.0
> Ahg483408 jgi|Araly1|483408|fgenesh2_kg.4__2468__AT2G43060.1
Length=844
Score = 1134 bits (614), Expect = 0.0
Identities = 787/863 (91%), Gaps = 41/863 (5%)
Strand=Plus/Plus
Query 4 aaaaaaaaaGTTTTATAAAGGTTCTCAACTCAAGTTCTCTTCTCTAAAAAACCCAAACAA 63
|||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| |
Sbjct 2 AAAAAAAAAGTTTTATAAAGGTTCTCAATTCAAGTTCTCTTCTCTAAACAACCCAAACCA 61
Query 64 TGGCCTCTGCAGACAAACTCATAAACACAGATGTCCCTGAAAAGGACGTTTTTGCCTTCC 123
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 62 TGGCCTCTGCAGACAAACTCATAAACACAGATGTCCCTGAAAAGGACGTTTTTGCCCTCC 121
Query 124 ACTTCCTCCAATCCCTCTCAAATCTCAGAAAACAAAACCCTTTTGATACTCCGGACCaaa 183
|||| ||||||||||||||||||||||||| |||||||||||| || ||||||| ||||
Sbjct 122 ACTTTCTCCAATCCCTCTCAAATCTCAGAACACAAAACCCTTTAAATTCTCCGGA-CAAA 180
Query 184 --aaaaCTACCGCGTGAGGAAGATCAAGAAGGCTGCGTACGTTTCCATGGCCAGAGCAGC 241
|| | | || ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TCAATA-GATCGTGTGAGAAAGATCAAGAAGGCTGCGTACGTTTCCATGGCCAGAGCAGC 239
Query 242 CGGAGGGAGTAGCCGGCTATGGAGCAGAGCCCTCTTGCGTAGAGCAGACAAAGATGACAA 301
|||||||| |||||||||||||||||||||||||||||| |||| | ||||||||||||
Sbjct 240 CGGAGGGAATAGCCGGCTATGGAGCAGAGCCCTCTTGCGCCGAGCCGCCAAAGATGACAA 299
Query 302 CAAGATCGTAAGATTTTCAAGGAGGAAGTGGAAGATATCATCAAAACGGAGGAGGAGTAA 361
||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 300 CAAGAGCGTAAGATTTTCAAGGAGGAAGAGGAAGATATCATCAAAACGGAGGAGGAGTAA 359
Query 362 CCAGAGAGCTCCGGTGGTGGAGGAGGCGGCGGAGAGGCTGAGGAATCTTGTTCCGGGAGG 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 CCAGAGAGCTCCGGTGGTGGAGGAGGCGGCGGAGAGGCTGAGGAATCTTGTTCCGGGAGG 419
Query 422 CGGAGGAATGGAGACGTCAAAGCTGATGGAAGAGACGGCTCATTACATCAAGTGCCTTAG 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 CGGAGGAATGGAGACGTCAAAGCTGATGGAAGAGACGGCTCATTACATCAAGTGCCTTAG 479
Query 482 TATGCAGGTCAAGGTCATGCAGTGTCTCGTTGATGGCTTATCTCCCAAATGATCATCAAT 541
|||||||||||||||||||||||| ||||||||||| ||||||| |||||||||||| |
Sbjct 480 TATGCAGGTCAAGGTCATGCAGTGCCTCGTTGATGGTTTATCTCAGAAATGATCATCATT 539
Query 542 TAATCATCA--A-CATCA-T-CATCA--A-TGATCGATGTATATAGAGAT-A--CGACAC 590
||||||||| | ||||| | ||||| | |||| ||||||||||||||| | | ||||
Sbjct 540 TAATCATCATCATCATCAATTCATCATCAGTGATTGATGTATATAGAGATCATACAACAC 599
Query 591 ATACAT-AGT-C-TA-T-T-GGATTGGGGTAATCATAACGA-atatatatgtgtatatat 643
|| ||| | | | || | | ||||||||||||||||||| | ||| ||| ||||||||||
Sbjct 600 ATGCATGA-TACATAGTATTGGATTGGGGTAATCATAAC-ACATAGATACGTGTATATAT 657
Query 644 atatatatatatatatatatattcttatatatatacatacgtgtaagataggatacatat 703
| ||||||||||||||||||| | ||| | ||||||||||||||||||||
Sbjct 658 ACATATATATATATATATATA--C--ATA------C----GTGTAAGATAGGATACATAT 703
Query 704 atGAAATGTGTGGATATGTATTAGTCTCGAAGTAACGAAAGAttttttt-ctttttcttt 762
||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 704 ATGAAATGTGTGGATATGTAT--GTCTCGAAGTAACGAAAGATTTTTTTTCTTTTTCTTT 761
Query 763 tcttgaattttGATAAAAGGGGATTTATTATTTATCATATGCTATGGCCGGTTTAAACAT 822
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 762 TCTTGAATTTTGATAAATGGGGATTTATTATTTATCATATGCTATGGCCGGTTTAAACAT 821
Query 823 TAGGGCTTGGTAACTTGCCCTTG 845
|||||||||| |||||||| |||
Sbjct 822 TAGGGCTTGGGAACTTGCCGTTG 844
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33281306541
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5