BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G43080.1
Length=1201
Score E
Sequences producing significant alignments: (Bits) Value
Ahg935201 jgi|Araly1|935201|scaffold_403189.1 1528 0.0
> Ahg935201 jgi|Araly1|935201|scaffold_403189.1
Length=893
Score = 1528 bits (827), Expect = 0.0
Identities = 862/879 (98%), Gaps = 2/879 (0%)
Strand=Plus/Plus
Query 175 GAGATCGAGATCAGCTAGACATGGCTCCTGCCATGAAGATCGTCTTCGGTCTCTTGACAT 234
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GAGATCGAGATCAGCTAGACATGGCTCCTGCCATGAAGATCGTCTTCGGTCTCTTGACAT 60
Query 235 TTGTCACTGTCGGAATGGTCATCGGTTCCTTGTTACAATTGGCCTTTATTAATAGATTGG 294
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TTGTCACTGTCGGAATGGTCATCGGTTCCTTGTTACAATTGGCCTTTATTAATAGATTGG 120
Query 295 AAGATTCGTACGGAACTGGATTTCCGTCTCTAAGAGGACTTCGAGGACAGAACACCCGCT 354
||||||||||||||||||||||||||||||||||||| |||||||| |||| ||||||||
Sbjct 121 AAGATTCGTACGGAACTGGATTTCCGTCTCTAAGAGGGCTTCGAGGCCAGAGCACCCGCT 180
Query 355 ATCTACGAGATGTCTCCCGGTGGGCAAATGACAAAGATGCAGAATTGTTACGGATTGGCA 414
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 ATCTACGAGATGTTTCCCGGTGGGCAAATGACAAAGATGCAGAATTGTTACGGATTGGCA 240
Query 415 ATGTCAAGCCTGAAGTAGTCAGTTGGTCCCCTCGAATTATTGTGCTTCATGACTTTCTCA 474
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 241 ATGTCAAGCCCGAAGTAGTCAGTTGGTCCCCTCGAATTATTGTGCTTCATGACTTTCTAA 300
Query 475 GTCCGGAGGAATGTGAATACCTAAAAGCAATCGCCCGGCCTCGCCTTCAAGTTTCCACTG 534
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GTCCGGAGGAATGTGAATACCTAAAAGCAATCGCCCGGCCTCGCCTTCAAGTTTCCACTG 360
Query 535 TTGTTGATGTAAAAACCGGAAAGGGAGTTAAAAGTGACGTGAGGACAAGCTCCGGAATGT 594
||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 361 TTGTTGATGTAAAAACCGGAAAGGGAGTTAAAAGTGATGTGAGGACAAGCTCTGGAATGT 420
Query 595 TTCTAACTCATGTAGAAAGAAGTTATCCAATAATACAGGCAATTGAAAAGCGAATTGCAG 654
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 TTCTAACTCATGTAGAAAGAAGTTATCCAATAATACAGGCAATTGAAAAGCGAATTGCAG 480
Query 655 TCTTTTCTCAAGTACCAGCGGAAAATGGAGAACTTATTCAAGTTCTAAGATATGAGCCGC 714
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 TTTTTTCTCAAGTACCAGCGGAAAATGGAGAACTTATTCAAGTTCTAAGATATGAGCCGA 540
Query 715 AGCAGTTTTACAAACCACATCACGATTACTTTGCTGACACTTTCAATCTAAAGCGTGGTG 774
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 541 AGCAGTTTTACAAACCACATCACGATTACTTTGCTGACACTTTCAATCTGAAGCGTGGTG 600
Query 775 GTCAGCGCGTAGCAACTATGCTTATGTATCTAACTGATGACGTCGAAGGAGGAGAAACTT 834
|||| || |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 GTCAACGAGTAGCAACAATGCTTATGTATCTAACTGATGACGTCGAAGGAGGAGAAACTT 660
Query 835 ATTTCCCTTTGGCTGGTGATGGTGATTGCACCTGTGGTGGCAAAATCATGAAAGGCATCT 894
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 ATTTCCCTTTGGCTGGTGATGGTGATTGCACCTGTGGTGGCAAAATCATGAAAGGCATCT 720
Query 895 CTGTTAAACCCACCAAAGGAGACGCAGTTCTCTTCTGGAGCATGGGACTCGACGGACAGT 954
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 CTGTTAAACCCACCAAAGGAGACGCAGTTCTCTTCTGGAGCATGGGACTCGACGGACAGT 780
Query 955 CAGATCCTAGGAGCATACATGGAGGATGTGAAGTTCTGTCTGGAGA-AAAGTGGTCTGCT 1013
||||||| |||||||||||||||||||||||||||||||||||||| ||| |||||||||
Sbjct 781 CAGATCCAAGGAGCATACATGGAGGATGTGAAGTTCTGTCTGGAGAGAAA-TGGTCTGCT 839
Query 1014 ACTAAATGGATGAGGCAAAAAGCTACTTCTTGAAGAACT 1052
|||||||||||||||||||||||||||||||||||||||
Sbjct 840 ACTAAATGGATGAGGCAAAAAGCTACTTCTTGAAGAACT 878
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44832550392
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5