BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G43090.1
Length=1046
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483410 jgi|Araly1|483410|fgenesh2_kg.4__2470__AT2G43090.1 1458 0.0
> Ahg483410 jgi|Araly1|483410|fgenesh2_kg.4__2470__AT2G43090.1
Length=1032
Score = 1458 bits (789), Expect = 0.0
Identities = 962/1041 (92%), Gaps = 30/1041 (3%)
Strand=Plus/Plus
Query 26 AAACAATGGCGGCTTCTCTGCAATCAGCAAACCCTACATTGTCACGAACCCTAGCTTCTC 85
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1 AAACAATGGCGGCTTCTCTGCAATCAGCAAACCCTACATTGTCCCGAACCCTAGCTTCTC 60
Query 86 CGAACAAACCTTCCTCCTTCGCCACCTTCCGATCTCCATTTCTCAGATTCAATTCAACAT 145
|||||||| || |||||||||| |||||||||||||||||||||||||||||||| || |
Sbjct 61 CGAACAAATCTCCCTCCTTCGCTACCTTCCGATCTCCATTTCTCAGATTCAATTCCACCT 120
Query 146 CCGTCGCTTCCAATTTCAAACCCCTAGTTTCTCGAGAAGCATCCTCATCGTTCGTCACTC 205
||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |
Sbjct 121 CCGTCGCTTCCAATTTCAAACCCCTCGTTTCACGAGAAGCATCCTCATCGTTCGTCACAC 180
Query 206 GCTCCGCCGCCGAGCCACAAGAAAGAAAAACCTTCCATGGACTGTGCTATGTCGTCGGCG 265
|||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| |
Sbjct 181 GCTCCGCCGCCGAGCCACAAGAGAGAAAAACCTTCCATGGACTCTGCTATGTCGTCGGTG 240
Query 266 ACAACATCGACACTGACCAAATCATTCCCGCGGAGTTTCTCACTCTCGTCCCTTCGAATC 325
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 241 ACAACATCGACACTGACCAAATCATTCCCGCAGAGTTTCTCACTCTCGTCCCTTCGAATC 300
Query 326 CAGAGGAATACGAGAAACTCGGTTCTTACGCTTTAGTTGGTCTTCCAGCTTCTTACAAGG 385
|||| |||||||||||||||||||| |||||| |||||||||||||||||||||||||||
Sbjct 301 CAGAAGAATACGAGAAACTCGGTTCCTACGCTCTAGTTGGTCTTCCAGCTTCTTACAAGG 360
Query 386 AACGATTCGTTCAGCCAGGTGAGATGAAGACGAAGTACTCAATCATCATTGGCGGTGAAA 445
| ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 361 AGCGATTCGTTCAGCCAGGAGAGATGAAGACGAAGTACTCAATCATCATCGGCGGTGAAA 420
Query 446 ACTTTGGATGTGGATCGTCACGTGAACATGCTCCGGTTTGTTTAGGAGCAGCGGGAGCTA 505
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 ACTTCGGATGTGGATCGTCACGTGAACATGCTCCGGTTTGTTTAGGAGCAGCGGGAGCTA 480
Query 506 AAGCAGTGGTGGCTCAGTCTTATGCTAGAATCTTTTTCAGGAACTCTGTTGCTACTGGTG 565
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 481 AAGCAGTGGTGGCTCAGTCTTATGCTAGAATCTTTTTCAGGAACTCTGTGGCTACAGGTG 540
Query 566 AGGTTTATCCTTTGGATTCTGAAGTTAGGGTTTGTGATGAGTGTACAACTGGTGATGTTG 625
|||||||||| |||||||| || |||||||||||||||||||||| ||||||||||||||
Sbjct 541 AGGTTTATCCGTTGGATTCGGAGGTTAGGGTTTGTGATGAGTGTAAAACTGGTGATGTTG 600
Query 626 CGACTGTTGAGTTGAGGGAAGGAGATAGTATTTTGATCAATCATACGACTGGGAAAGAGT 685
|||| ||||| ||||||||||| ||||||||| |||||||||||||||| ||||||||||
Sbjct 601 CGACGGTTGAATTGAGGGAAGGTGATAGTATTCTGATCAATCATACGACGGGGAAAGAGT 660
Query 686 ACAAGCTTAAGCCGATTGGTGATGCTGGACCAGTGATTGATGCTGGTGGTATATTTGCTT 745
| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 661 ATAAGCTTAAGCCGATTGGTGATGCTGGACCAGTTATTGATGCTGGTGGTATATTTGCTT 720
Query 746 ATGCTAGGAAAGCTGGAATGATTCCATCTGCTGCTGCTTGATTTTGAC-TTCAGGTGTCA 804
||||||||||||||||||||||||||||||||||||||||||||| || || ||||||||
Sbjct 721 ATGCTAGGAAAGCTGGAATGATTCCATCTGCTGCTGCTTGATTTT-ACCTTGAGGTGTCA 779
Query 805 ATGGAAGTGCATGAGAGTCACTTCAAGGATCTTGATCCAATAATAAGAA---TA----T- 856
||| ||||||||||||||| ||| ||||||||||||||||||| ||||| || |
Sbjct 780 ATGCAAGTGCATGAGAGTCTCTTGAAGGATCTTGATCCAATAAAAAGAACAATAAGAGTA 839
Query 857 -GTAATGTTTCCAAAA-GCTTATGAACCTAATCTATGTTTTATGAATATATATGACTATC 914
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 TGTAATGTTTCCAAAAAGCTTATGAACCTAATCTATGTTTTATGAATATATATGACTATT 899
Query 915 G--GCTT---T-AGTCTTCAGTATCAGTTT--CTTGTTTACATTTGGATGTATCAGCTGC 966
| | || | |||||||||| || |||| ||||| ||||||||| ||| ||||||||
Sbjct 900 GATGATTGGCTTAGTCTTCAGTTTCGGTTTTGCTTGTCTACATTTGGCTGTTTCAGCTGC 959
Query 967 Taaaaaa--aTGCATAGTTTCCCATCCCATTTGAAACGACGTTTTCTCTCATGTCTTCCA 1024
|||||| ||||||||||| || || |||||||||||||||||||| |||||||
Sbjct 960 TAAAAATGCATGCATAGTTT---AT----TT-GAAACGACGTTTTCTCTCATTTCTTCCA 1011
Query 1025 CTAATATAATCTTCTGGTCAT 1045
||||| |||||||| ||||||
Sbjct 1012 CTAATTTAATCTTCCGGTCAT 1032
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38923498257
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5