BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G43100.1
Length=1030
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483411 jgi|Araly1|483411|fgenesh2_kg.4__2471__AT2G43100.1 1160 0.0
> Ahg483411 jgi|Araly1|483411|fgenesh2_kg.4__2471__AT2G43100.1
Length=768
Score = 1160 bits (628), Expect = 0.0
Identities = 726/773 (94%), Gaps = 7/773 (1%)
Strand=Plus/Plus
Query 26 ATGGCGTATTCTCTTCCTACATTTCCCCAAGCCTTACCTTGC-TCGTC-AACCAAAACTT 83
||||||| ||||||||||||||| || ||||||||||| | | ||| | |||||||||||
Sbjct 1 ATGGCGTCTTCTCTTCCTACATTGCCGCAAGCCTTACCGT-CTTCG-CTAACCAAAACTT 58
Query 84 CTTCCTCCTTGGCTACCTTCCGATCTCCTTTCTTAAGATTCAATGGTTCCACTTCCTTAA 143
|||||| | |||||||||| |||||||||| ||||||||||||||||||||||||| |
Sbjct 59 CTTCCT-C--GGCTACCTTCAAATCTCCTTTCCTAAGATTCAATGGTTCCACTTCCTTCA 115
Query 144 TCCCCTCCTCTATCTCCATCACTTCACGTGGCACATCCTCCCCGACCATCATCCCACGTG 203
|||| |||||||||||| ||||||||||||| ||||||||| |||||||||||||||||
Sbjct 116 TCCCATCCTCTATCTCCCTCACTTCACGTGGTACATCCTCCATGACCATCATCCCACGTG 175
Query 204 CTGCCGCCTCAGAATCCGACTCTAACGAAGCCCTAGCCAACACAACCTTCCACGGCCTCT 263
|||| ||| ||||||||||||||||||||||| |||||||||| ||||||||||| ||||
Sbjct 176 CTGCAGCCACAGAATCCGACTCTAACGAAGCCTTAGCCAACACTACCTTCCACGGTCTCT 235
Query 264 GCTATGTCTTGAAAGACAACATAGACACCGACCAGATCATCCCAGCAGGAGCCGCTTGCA 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 236 GCTATGTCTTGAAAGACAACATAGACACCGACCAGATCATCCCAGCAGGAGCCGCTTGCA 295
Query 324 CCTTCCCATCGAACCAGCAAGAGCGTGATGAGATCGCCGCTCACGCTCTCTCTGGTCTAC 383
|||||||||| ||||||||||| |||||||||||||| |||||||||||||||||||| |
Sbjct 296 CCTTCCCATCAAACCAGCAAGAACGTGATGAGATCGCTGCTCACGCTCTCTCTGGTCTCC 355
Query 384 CAGACTTCCACAAAACACGGTTCATTGAGCCAGGAGAGAACAGATCAAAGTACTCAATCA 443
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 356 CAGACTTCCACAAAACACGGTTCGTTGAGCCAGGAGAGAACAGATCAAAGTACTCAATCA 415
Query 444 TAATCGGCGGCGAAAACTTTGGTTGCGGATCGTCACGTGAACATGCTCCGGTCTGTCTTG 503
||||||| || |||||||||||||| ||||||||||||||||| ||||| |||||||| |
Sbjct 416 TAATCGGTGGAGAAAACTTTGGTTGTGGATCGTCACGTGAACACGCTCCAGTCTGTCTAG 475
Query 504 GAGCAGCTGGAGCTAAAGCCATAGTTGCTGAGTCTTACGCAAGAATCTTTTTCCGTAACT 563
||||||||||||||||||||||||||||||| || |||||||| ||||||||||||||||
Sbjct 476 GAGCAGCTGGAGCTAAAGCCATAGTTGCTGAATCCTACGCAAGGATCTTTTTCCGTAACT 535
Query 564 CGGTTGCTACAGGAGAGGTGTTTCCGCTCGAGTCAGAGGTTAGAGTCTGTGAGGAGTGTA 623
| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 536 CAGTGGCTACAGGAGAGGTGTTTCCGCTCGAGTCAGAGGTTAGAGTCTGTGAGGAGTGTA 595
Query 624 AGACAGGAGATACGGTGACGATCGAGCTGAGTGATAGTGGTGGTTTATTGACTAATCACA 683
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 596 AGACAGGAGACACTGTGACGATCGAGCTGAGTGATAGTGGTGGTTTATTGACTAATCACA 655
Query 684 CGACCGGTAAAAACTATAAGCTGAAGTCGATCGGTGATGCTGGACCGGTTATTGATGCTG 743
| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 656 CAACCGGGAAAAACTATAAGCTGAAGTCGATCGGTGATGCTGGACCGGTTATTGATGCTG 715
Query 744 GTGGTATTTTTGCTTATGCGAGGATGATGGGAATGATTCCATCATTAGCTTAA 796
|||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 716 GTGGGATTTTTGCTTACGCGAGGATGATGGGAATGATTCCATCATTAGCTTAA 768
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38313531585
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5