BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G43110.1 Length=938 Score E Sequences producing significant alignments: (Bits) Value Ahg483412 jgi|Araly1|483412|fgenesh2_kg.4__2472__AT2G43110.1 1343 0.0 Ahg497422 jgi|Araly1|497422|fgenesh2_kg.401__1__AT2G43110.1 1338 0.0 > Ahg483412 jgi|Araly1|483412|fgenesh2_kg.4__2472__AT2G43110.1 Length=897 Score = 1343 bits (727), Expect = 0.0 Identities = 851/909 (94%), Gaps = 15/909 (2%) Strand=Plus/Plus Query 2 AAAAACATGGCAACTACAGAGCTAAAACCCTCCGCCGTTAAAAACCCTAAAAGAAATCGA 61 |||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||| Sbjct 1 AAAAACATGGCAACCACAGAGGTAAAACCCTCCGCCGTTAAAAACCCTAAAAGAAATCGA 60 Query 62 AGACCATCACATGGTCCgaagaaagatttgaagaagaagaagactaagattactaagaag 121 ||||||||||||||||||||||||||| | ||||||| ||| | |||| ||| Sbjct 61 AGACCATCACATGGTCCGAAGAAAGATCT------GAAGAAG---AAG--T-CTAAAAAG 108 Query 122 actaagaagtcgaaagCTCCCACCTTTGATAAGACCATTGAGAAGAGTAGAAGTAACGAC 181 ||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| Sbjct 109 ACTAAGAAGTCGAAAGCTCCCACCTTTGATAAGACCATTGAGAAGAGTATAAGAAACGAC 168 Query 182 CAGAAAACCGACAACGACGAAGACGAGCAACTGTATTCGGAACCGGTATCGGCCTCTGAG 241 ||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||||| Sbjct 169 CAGAAAACCGAGAACGAAGATGACGAGCAACTGTATTCGGAACCGGTATCGGCCTCTGAG 228 Query 242 CAGCTCAACTACTTTTTGAATCATCTTGACTCCGCCATTGGTATCAAGGTTTCTTCTTTA 301 ||||| | |||||| |||||||| ||||| |||||||||||||||||||||||||||||| Sbjct 229 CAGCTTAGCTACTTCTTGAATCAGCTTGAATCCGCCATTGGTATCAAGGTTTCTTCTTTA 288 Query 302 GAGCTTGAACCCATTAAAGATACGTGTATAGTTGAGTTATCTCAAGGGTTGGATCAAGAT 361 ||||| ||||||||||||||||||||||||||||||||||||||| | |||||||||||| Sbjct 289 GAGCTCGAACCCATTAAAGATACGTGTATAGTTGAGTTATCTCAAAGATTGGATCAAGAT 348 Query 362 GTAAGCAACTTGGGAGAACATATAAAGCTTTCTTGTGGGTCTTCATGGAGAGAGACTCTT 421 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 349 GTAAGCAACTTGGGAGAGCATATAAAGCTTTCTTGTGGGTCTTCATGGAGAGAGACTCTT 408 Query 422 TGTGAAGGAGAGTCACTTGAAAGGAAAGTTGAACCGGGAAACCCATCTGTTCTTGTTATT 481 |||||||||||| | |||||| |||| |||||||| |||||||||||||||||||||||| Sbjct 409 TGTGAAGGAGAGACCCTTGAACGGAATGTTGAACCTGGAAACCCATCTGTTCTTGTTATT 468 Query 482 AGTTCCTCTGCTCTGAGATCTTTGGAACTTCTAAGGGGTTTGCATTCATTGACTAAGCAA 541 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 469 AGTTCCTCTGCTCTGAGATCTTTGGAACTTCTAAGGGGTTTGCATTCATTGACTAAGCAT 528 Query 542 TGTCCAGCAGTGAAGTTGTTCTCAAAGCATTTGAAGGTTGAGGAACAGGTATCTCTGTTG 601 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 529 TGTCCAGCAGTGAAGTTGTTCTCAAAGCATTTGAAGGTCGAGGAACAGGTATCTCTGTTG 588 Query 602 AAGAAACGGGTTAATATTGGGAGTGGCACACCAAACAGGATCAAAAAGCTAGTCGACATA 661 ||||||||||| ||||||||||| |||||||||||||| |||||||||||| |||||||| Sbjct 589 AAGAAACGGGTGAATATTGGGAGCGGCACACCAAACAGAATCAAAAAGCTAATCGACATA 648 Query 662 GAAGCTTTAGGGCTTTCGCGTTTAGATATGATTGTGATCGACATGCACCCAGATGTCAAG 721 ||||| |||||||||||||||||||||||||||||| | ||||||||||||||||||||| Sbjct 649 GAAGCGTTAGGGCTTTCGCGTTTAGATATGATTGTGGTGGACATGCACCCAGATGTCAAG 708 Query 722 GGATTTTCCTTATTCACATTGCCTCAAGTCAGAGATGAGTTTTGGGATTTGTATAAAAAC 781 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 709 GGATTTTCCTTATTCACATTGCCTCAAGTCAGAGATGAGTTTTGGGATTTGTATAAAAAC 768 Query 782 TGCTTCCACCAGAGAGTCCTAGAAGGAAGACTTCGTATCTGCATGTATGGTCCAAAGCCT 841 |||||||||||||||||| ||||||||||||| |||||||||||||||||||| ||||| Sbjct 769 TGCTTCCACCAGAGAGTCTTAGAAGGAAGACTACGTATCTGCATGTATGGTCCGAAGCCA 828 Query 842 TCTCCAAACCTAAAGAAGAAGAACAAGAAATAACTGT--TTATTAA-TTGTATCAAATTC 898 |||||||| ||||||||||||| ||||| ||||| | || || | ||||||||||||| Sbjct 829 GCTCCAAACTTAAAGAAGAAGAAAAAGAATTAACTTTGATTGTTTAGTTGTATCAAATTC 888 Query 899 TTAAAATTA 907 ||||||||| Sbjct 889 TTAAAATTA 897 > Ahg497422 jgi|Araly1|497422|fgenesh2_kg.401__1__AT2G43110.1 Length=898 Score = 1338 bits (724), Expect = 0.0 Identities = 850/909 (94%), Gaps = 15/909 (2%) Strand=Plus/Plus Query 2 AAAAACATGGCAACTACAGAGCTAAAACCCTCCGCCGTTAAAAACCCTAAAAGAAATCGA 61 |||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||| Sbjct 1 AAAAACATGGCAACCACAGAGGTAAAACCCTCCGCCGTTAAAAACCCTAAAAGAAATCGA 60 Query 62 AGACCATCACATGGTCCgaagaaagatttgaagaagaagaagactaagattactaagaag 121 ||||||||||||||||||||||||||| | ||||||| ||| | |||| ||| Sbjct 61 AGACCATCACATGGTCCGAAGAAAGATCT------GAAGAAG---AAG--T-CTAAAAAG 108 Query 122 actaagaagtcgaaagCTCCCACCTTTGATAAGACCATTGAGAAGAGTAGAAGTAACGAC 181 ||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| Sbjct 109 ACTAAGAAGTCGAAAGCTCCCACCTTTGATAAGACCATTGAGAAGAGTATAAGAAACGAC 168 Query 182 CAGAAAACCGACAACGACGAAGACGAGCAACTGTATTCGGAACCGGTATCGGCCTCTGAG 241 ||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||||| Sbjct 169 CAGAAAACCGAGAACGAAGATGACGAGCAACTGTATTCGGAACCGGTATCGGCCTCTGAG 228 Query 242 CAGCTCAACTACTTTTTGAATCATCTTGACTCCGCCATTGGTATCAAGGTTTCTTCTTTA 301 ||||| | |||||| |||||||| ||||| |||||||||||||||||||||||||||||| Sbjct 229 CAGCTTAGCTACTTCTTGAATCAGCTTGAATCCGCCATTGGTATCAAGGTTTCTTCTTTA 288 Query 302 GAGCTTGAACCCATTAAAGATACGTGTATAGTTGAGTTATCTCAAGGGTTGGATCAAGAT 361 ||||| ||||||||||||||||||||||||||||||||||||||| | |||||||||||| Sbjct 289 GAGCTCGAACCCATTAAAGATACGTGTATAGTTGAGTTATCTCAAAGATTGGATCAAGAT 348 Query 362 GTAAGCAACTTGGGAGAACATATAAAGCTTTCTTGTGGGTCTTCATGGAGAGAGACTCTT 421 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 349 GTAAGCAACTTGGGAGAGCATATAAAGCTTTCTTGTGGGTCTTCATGGAGAGAGACTCTT 408 Query 422 TGTGAAGGAGAGTCACTTGAAAGGAAAGTTGAACCGGGAAACCCATCTGTTCTTGTTATT 481 |||||||||||| | |||||| |||| |||||||| |||||||||||||||||||||||| Sbjct 409 TGTGAAGGAGAGACCCTTGAACGGAATGTTGAACCTGGAAACCCATCTGTTCTTGTTATT 468 Query 482 AGTTCCTCTGCTCTGAGATCTTTGGAACTTCTAAGGGGTTTGCATTCATTGACTAAGCAA 541 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 469 AGTTCCTCTGCTCTGAGATCTTTGGAACTTCTAAGGGGTTTGCATTCATTGACTAAGCAT 528 Query 542 TGTCCAGCAGTGAAGTTGTTCTCAAAGCATTTGAAGGTTGAGGAACAGGTATCTCTGTTG 601 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 529 TGTCCAGCAGTGAAGTTGTTCTCAAAGCATTTGAAGGTCGAGGAACAGGTATCTCTGTTG 588 Query 602 AAGAAACGGGTTAATATTGGGAGTGGCACACCAAACAGGATCAAAAAGCTAGTCGACATA 661 ||||||||||| ||||||||||| |||||||||||||| |||||||||||| |||||||| Sbjct 589 AAGAAACGGGTGAATATTGGGAGCGGCACACCAAACAGAATCAAAAAGCTAATCGACATA 648 Query 662 GAAGCTTTAGGGCTTTCGCGTTTAGATATGATTGTGATCGACATGCACCCAGATGTCAAG 721 ||||| |||||||||||||||||||||||||||||| | ||||||||||||||||||||| Sbjct 649 GAAGCGTTAGGGCTTTCGCGTTTAGATATGATTGTGGTGGACATGCACCCAGATGTCAAG 708 Query 722 GGATTTTCCTTATTCACATTGCCTCAAGTCAGAGATGAGTTTTGGGATTTGTATAAAAAC 781 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 709 GGATTTTCCTTATTCACATTGCCTCAAGTCAGAAATGAGTTTTGGGATTTGTATAAAAAC 768 Query 782 TGCTTCCACCAGAGAGTCCTAGAAGGAAGACTTCGTATCTGCATGTATGGTCCAAAGCCT 841 |||||||||||||||||| ||||||||||||| |||||||||||||||||||| ||||| Sbjct 769 TGCTTCCACCAGAGAGTCTTAGAAGGAAGACTACGTATCTGCATGTATGGTCCGAAGCCA 828 Query 842 TCTCCAAACCTAAAGAAGAAGAACAAGAAATAACTGT--TTATTAA-TTGTATCAAATTC 898 |||||||| ||||||||||||| ||||| ||||| | || || | ||||||||||||| Sbjct 829 GCTCCAAACTTAAAGAAGAAGAAAAAGAATTAACTTTGATTGTTTAGTTGTATCAAATTC 888 Query 899 TTAAAATTA 907 ||||||||| Sbjct 889 TTAAAATTA 897 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 34806223221 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5