BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G43110.1
Length=938
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483412 jgi|Araly1|483412|fgenesh2_kg.4__2472__AT2G43110.1 1343 0.0
Ahg497422 jgi|Araly1|497422|fgenesh2_kg.401__1__AT2G43110.1 1338 0.0
> Ahg483412 jgi|Araly1|483412|fgenesh2_kg.4__2472__AT2G43110.1
Length=897
Score = 1343 bits (727), Expect = 0.0
Identities = 851/909 (94%), Gaps = 15/909 (2%)
Strand=Plus/Plus
Query 2 AAAAACATGGCAACTACAGAGCTAAAACCCTCCGCCGTTAAAAACCCTAAAAGAAATCGA 61
|||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1 AAAAACATGGCAACCACAGAGGTAAAACCCTCCGCCGTTAAAAACCCTAAAAGAAATCGA 60
Query 62 AGACCATCACATGGTCCgaagaaagatttgaagaagaagaagactaagattactaagaag 121
||||||||||||||||||||||||||| | ||||||| ||| | |||| |||
Sbjct 61 AGACCATCACATGGTCCGAAGAAAGATCT------GAAGAAG---AAG--T-CTAAAAAG 108
Query 122 actaagaagtcgaaagCTCCCACCTTTGATAAGACCATTGAGAAGAGTAGAAGTAACGAC 181
||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct 109 ACTAAGAAGTCGAAAGCTCCCACCTTTGATAAGACCATTGAGAAGAGTATAAGAAACGAC 168
Query 182 CAGAAAACCGACAACGACGAAGACGAGCAACTGTATTCGGAACCGGTATCGGCCTCTGAG 241
||||||||||| ||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 169 CAGAAAACCGAGAACGAAGATGACGAGCAACTGTATTCGGAACCGGTATCGGCCTCTGAG 228
Query 242 CAGCTCAACTACTTTTTGAATCATCTTGACTCCGCCATTGGTATCAAGGTTTCTTCTTTA 301
||||| | |||||| |||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 229 CAGCTTAGCTACTTCTTGAATCAGCTTGAATCCGCCATTGGTATCAAGGTTTCTTCTTTA 288
Query 302 GAGCTTGAACCCATTAAAGATACGTGTATAGTTGAGTTATCTCAAGGGTTGGATCAAGAT 361
||||| ||||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct 289 GAGCTCGAACCCATTAAAGATACGTGTATAGTTGAGTTATCTCAAAGATTGGATCAAGAT 348
Query 362 GTAAGCAACTTGGGAGAACATATAAAGCTTTCTTGTGGGTCTTCATGGAGAGAGACTCTT 421
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 349 GTAAGCAACTTGGGAGAGCATATAAAGCTTTCTTGTGGGTCTTCATGGAGAGAGACTCTT 408
Query 422 TGTGAAGGAGAGTCACTTGAAAGGAAAGTTGAACCGGGAAACCCATCTGTTCTTGTTATT 481
|||||||||||| | |||||| |||| |||||||| ||||||||||||||||||||||||
Sbjct 409 TGTGAAGGAGAGACCCTTGAACGGAATGTTGAACCTGGAAACCCATCTGTTCTTGTTATT 468
Query 482 AGTTCCTCTGCTCTGAGATCTTTGGAACTTCTAAGGGGTTTGCATTCATTGACTAAGCAA 541
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 469 AGTTCCTCTGCTCTGAGATCTTTGGAACTTCTAAGGGGTTTGCATTCATTGACTAAGCAT 528
Query 542 TGTCCAGCAGTGAAGTTGTTCTCAAAGCATTTGAAGGTTGAGGAACAGGTATCTCTGTTG 601
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 529 TGTCCAGCAGTGAAGTTGTTCTCAAAGCATTTGAAGGTCGAGGAACAGGTATCTCTGTTG 588
Query 602 AAGAAACGGGTTAATATTGGGAGTGGCACACCAAACAGGATCAAAAAGCTAGTCGACATA 661
||||||||||| ||||||||||| |||||||||||||| |||||||||||| ||||||||
Sbjct 589 AAGAAACGGGTGAATATTGGGAGCGGCACACCAAACAGAATCAAAAAGCTAATCGACATA 648
Query 662 GAAGCTTTAGGGCTTTCGCGTTTAGATATGATTGTGATCGACATGCACCCAGATGTCAAG 721
||||| |||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 649 GAAGCGTTAGGGCTTTCGCGTTTAGATATGATTGTGGTGGACATGCACCCAGATGTCAAG 708
Query 722 GGATTTTCCTTATTCACATTGCCTCAAGTCAGAGATGAGTTTTGGGATTTGTATAAAAAC 781
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 709 GGATTTTCCTTATTCACATTGCCTCAAGTCAGAGATGAGTTTTGGGATTTGTATAAAAAC 768
Query 782 TGCTTCCACCAGAGAGTCCTAGAAGGAAGACTTCGTATCTGCATGTATGGTCCAAAGCCT 841
|||||||||||||||||| ||||||||||||| |||||||||||||||||||| |||||
Sbjct 769 TGCTTCCACCAGAGAGTCTTAGAAGGAAGACTACGTATCTGCATGTATGGTCCGAAGCCA 828
Query 842 TCTCCAAACCTAAAGAAGAAGAACAAGAAATAACTGT--TTATTAA-TTGTATCAAATTC 898
|||||||| ||||||||||||| ||||| ||||| | || || | |||||||||||||
Sbjct 829 GCTCCAAACTTAAAGAAGAAGAAAAAGAATTAACTTTGATTGTTTAGTTGTATCAAATTC 888
Query 899 TTAAAATTA 907
|||||||||
Sbjct 889 TTAAAATTA 897
> Ahg497422 jgi|Araly1|497422|fgenesh2_kg.401__1__AT2G43110.1
Length=898
Score = 1338 bits (724), Expect = 0.0
Identities = 850/909 (94%), Gaps = 15/909 (2%)
Strand=Plus/Plus
Query 2 AAAAACATGGCAACTACAGAGCTAAAACCCTCCGCCGTTAAAAACCCTAAAAGAAATCGA 61
|||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1 AAAAACATGGCAACCACAGAGGTAAAACCCTCCGCCGTTAAAAACCCTAAAAGAAATCGA 60
Query 62 AGACCATCACATGGTCCgaagaaagatttgaagaagaagaagactaagattactaagaag 121
||||||||||||||||||||||||||| | ||||||| ||| | |||| |||
Sbjct 61 AGACCATCACATGGTCCGAAGAAAGATCT------GAAGAAG---AAG--T-CTAAAAAG 108
Query 122 actaagaagtcgaaagCTCCCACCTTTGATAAGACCATTGAGAAGAGTAGAAGTAACGAC 181
||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct 109 ACTAAGAAGTCGAAAGCTCCCACCTTTGATAAGACCATTGAGAAGAGTATAAGAAACGAC 168
Query 182 CAGAAAACCGACAACGACGAAGACGAGCAACTGTATTCGGAACCGGTATCGGCCTCTGAG 241
||||||||||| ||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 169 CAGAAAACCGAGAACGAAGATGACGAGCAACTGTATTCGGAACCGGTATCGGCCTCTGAG 228
Query 242 CAGCTCAACTACTTTTTGAATCATCTTGACTCCGCCATTGGTATCAAGGTTTCTTCTTTA 301
||||| | |||||| |||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 229 CAGCTTAGCTACTTCTTGAATCAGCTTGAATCCGCCATTGGTATCAAGGTTTCTTCTTTA 288
Query 302 GAGCTTGAACCCATTAAAGATACGTGTATAGTTGAGTTATCTCAAGGGTTGGATCAAGAT 361
||||| ||||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct 289 GAGCTCGAACCCATTAAAGATACGTGTATAGTTGAGTTATCTCAAAGATTGGATCAAGAT 348
Query 362 GTAAGCAACTTGGGAGAACATATAAAGCTTTCTTGTGGGTCTTCATGGAGAGAGACTCTT 421
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 349 GTAAGCAACTTGGGAGAGCATATAAAGCTTTCTTGTGGGTCTTCATGGAGAGAGACTCTT 408
Query 422 TGTGAAGGAGAGTCACTTGAAAGGAAAGTTGAACCGGGAAACCCATCTGTTCTTGTTATT 481
|||||||||||| | |||||| |||| |||||||| ||||||||||||||||||||||||
Sbjct 409 TGTGAAGGAGAGACCCTTGAACGGAATGTTGAACCTGGAAACCCATCTGTTCTTGTTATT 468
Query 482 AGTTCCTCTGCTCTGAGATCTTTGGAACTTCTAAGGGGTTTGCATTCATTGACTAAGCAA 541
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 469 AGTTCCTCTGCTCTGAGATCTTTGGAACTTCTAAGGGGTTTGCATTCATTGACTAAGCAT 528
Query 542 TGTCCAGCAGTGAAGTTGTTCTCAAAGCATTTGAAGGTTGAGGAACAGGTATCTCTGTTG 601
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 529 TGTCCAGCAGTGAAGTTGTTCTCAAAGCATTTGAAGGTCGAGGAACAGGTATCTCTGTTG 588
Query 602 AAGAAACGGGTTAATATTGGGAGTGGCACACCAAACAGGATCAAAAAGCTAGTCGACATA 661
||||||||||| ||||||||||| |||||||||||||| |||||||||||| ||||||||
Sbjct 589 AAGAAACGGGTGAATATTGGGAGCGGCACACCAAACAGAATCAAAAAGCTAATCGACATA 648
Query 662 GAAGCTTTAGGGCTTTCGCGTTTAGATATGATTGTGATCGACATGCACCCAGATGTCAAG 721
||||| |||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 649 GAAGCGTTAGGGCTTTCGCGTTTAGATATGATTGTGGTGGACATGCACCCAGATGTCAAG 708
Query 722 GGATTTTCCTTATTCACATTGCCTCAAGTCAGAGATGAGTTTTGGGATTTGTATAAAAAC 781
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 709 GGATTTTCCTTATTCACATTGCCTCAAGTCAGAAATGAGTTTTGGGATTTGTATAAAAAC 768
Query 782 TGCTTCCACCAGAGAGTCCTAGAAGGAAGACTTCGTATCTGCATGTATGGTCCAAAGCCT 841
|||||||||||||||||| ||||||||||||| |||||||||||||||||||| |||||
Sbjct 769 TGCTTCCACCAGAGAGTCTTAGAAGGAAGACTACGTATCTGCATGTATGGTCCGAAGCCA 828
Query 842 TCTCCAAACCTAAAGAAGAAGAACAAGAAATAACTGT--TTATTAA-TTGTATCAAATTC 898
|||||||| ||||||||||||| ||||| ||||| | || || | |||||||||||||
Sbjct 829 GCTCCAAACTTAAAGAAGAAGAAAAAGAATTAACTTTGATTGTTTAGTTGTATCAAATTC 888
Query 899 TTAAAATTA 907
|||||||||
Sbjct 889 TTAAAATTA 897
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34806223221
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5