BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G43120.1
Length=1154
Score E
Sequences producing significant alignments: (Bits) Value
Ahg902317 jgi|Araly1|902317|Al_scaffold_0004_2967 1554 0.0
Ahg324401 jgi|Araly1|324401|fgenesh1_pm.C_scaffold_5001945 505 3e-142
> Ahg902317 jgi|Araly1|902317|Al_scaffold_0004_2967
Length=969
Score = 1554 bits (841), Expect = 0.0
Identities = 928/970 (96%), Gaps = 5/970 (1%)
Strand=Plus/Plus
Query 76 ATGAGAGCTGCAATAAACAGAGCAAATTCACTTGGAGGTTTGTTTTCATTTAGGTTTATC 135
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1 ATGAGAGCTGCAATAAACAGAGCAAATTCACTTGGAGGTTTGTTTTCATTTAAGTTTATC 60
Query 136 AGAAACATCAAATCAATG---TCTTCTTCTACTTCCCAAGATTTCGTATCAAGACCTGTT 192
|||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||
Sbjct 61 AGAAACATCAAATCAATGTCTTCTTCTTCTTCTTCCCAAGATTTCGTATCAAGACCTGTT 120
Query 193 ATCAAGAAAGTCTTCGCTAAGCTTCAGAAAGAAGGCGATGGAGCCGTCGTTAGACGTGGC 252
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 ATCAAGAAAGTCTTCGCTAAGCTTCAGAAAGAAGGCGATGGAGCCGTCGTTAGACGTGGC 180
Query 253 ATTTCCAGGAGTGAGCAGAAGTTGTTAGATCCTTTCTTGATGCTAGATGAATTCTCCGTT 312
||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 181 ATTTCCAGGAGCGAGCAGAAGTTATTAGATCCGTTCTTGATGCTAGATGAATTCTCCGTT 240
Query 313 TCGCCTCCAGCTGGCTTCCCTGATCATCCTCACAGAGGGTTTGAAACTGTTACATACGTA 372
|||||||||||||| |||||||| |||||||||||||| ||||||||||||||||| |||
Sbjct 241 TCGCCTCCAGCTGGATTCCCTGACCATCCTCACAGAGGTTTTGAAACTGTTACATATGTA 300
Query 373 CTAGAGGGAGGAATCACTCACCAAGACTTCAAAGGTCACAAGGGTACAATATATGCTGGT 432
||||||||||||||||||||||| |||||||||||||| ||||||||||| |||||||||
Sbjct 301 CTAGAGGGAGGAATCACTCACCAGGACTTCAAAGGTCATAAGGGTACAATCTATGCTGGT 360
Query 433 GATGTTCAGTGGATGACTGCAGGAAGAGGAATCATTCATTCTGAAATGCCTGAAGAAGAA 492
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 GATGTTCAGTGGATGACTGCAGGAAGAGGAATCATTCATTCTGAAATGCCTGAAGAAGAA 420
Query 493 GTCAACAAAGGTTTACAACTTTGGATCAATCTTTCCTCCAACGAGAAAATGATAGAACCA 552
|| |||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 421 GTTAACAAAGGTTTACAACTTTGGATCAATCTTTCCTCCAACGAGAAAATGATTGAGCCA 480
Query 553 AACTACCAAGAACTGTCGCATTCAGACATACCAAAAGCAGAACAAAACGGTGTTGAAGTC 612
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 481 AACTACCAAGAACTGTCGCATTCAGACATACCAAAAACAGAACAAAACGGTGTTGAAGTC 540
Query 613 AAAGTCATTGCAGGAGAATCAATGGGAATTCAATCACCTGTTTACACAAGAACACCTACT 672
|||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 541 AAAGTCATAGCAGGAGAATCAATGGGAATTCAATCCCCTGTTTACACAAGAACACCTACA 600
Query 673 ATGTTCCTCGATTTCACTCTCCAACCAGGAGCTCAAATCCACCAGAATGTTCCAGAATCT 732
||||| || |||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 601 ATGTTTCTTGATTTCACTCTCCAACCAGGAGCTCAAATCCACCAGAACGTTCCCGAATCT 660
Query 733 TGGAACGCATTTGCTTACATTCTAGAGAGCGGTGAAGGCGGCGGCGTTTTCAGTTCCTCG 792
||||| || ||||||||| ||||||| |||||||||||||| ||||||||| |||| |||
Sbjct 661 TGGAATGCGTTTGCTTACGTTCTAGAAAGCGGTGAAGGCGGTGGCGTTTTCGGTTCTTCG 720
Query 793 AACTCTTCGCCTATTCCAGCACACAGTGTTGTGGTGTTCGGACCAGGGAATGATGGTGTT 852
|||||||| ||| || |||| |||| |||||||||||||||||||||||||||||||||
Sbjct 721 AACTCTTCCCCTGTTTCAGCCCACAACGTTGTGGTGTTCGGACCAGGGAATGATGGTGTT 780
Query 853 AGCGTGTGGAACAAGTCATCTTCAAAGCA-ATTGAGGTTTGTGTTGATTGCTGGAGAACC 911
||||||||||||||||||||||||||| | ||||||||||||||| ||||||||||||||
Sbjct 781 AGCGTGTGGAACAAGTCATCTTCAAAG-ATATTGAGGTTTGTGTTAATTGCTGGAGAACC 839
Query 912 GATTGGTGAACCGGTGGTTCAATACGGTCCGTTCGTGATGAATACTCAAGCTGAGATTGA 971
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 GATTGGTGAACCGGTGGTTCAATACGGTCCGTTCGTGATGAATACTCAAGCTGAGATTGA 899
Query 972 TATGACCATTGAAGATTATCACTATGGTAAGAATGGCTTCGAAATGGCCAAGTATTGGAG 1031
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 TATGACCATTGAAGATTATCACTATGGTAAGAATGGCTTCGAAATGGCCAAGTATTGGAG 959
Query 1032 GTCACAATGA 1041
||||||||||
Sbjct 960 GTCACAATGA 969
> Ahg324401 jgi|Araly1|324401|fgenesh1_pm.C_scaffold_5001945
Length=858
Score = 505 bits (273), Expect = 3e-142
Identities = 658/838 (79%), Gaps = 49/838 (6%)
Strand=Plus/Plus
Query 218 AGAAAGAAGGCGATGGAGCCGTCGTTAGACGTGGCATTTCCAGGAGTGAGC-AGAAGTTG 276
|||| ||||| ||||| || || |||||||| ||||| ||| |||||| | || |||||
Sbjct 44 AGAATGAAGGTGATGGTGCTGTTGTTAGACGAGGCATCACCAAGAGTGACCAAG-AGTTG 102
Query 277 TTAGATCCTTTCTTGAT-GCTAGATGAATTCTCCGTTTCGCCTCCAGCTGGCTTCCCTGA 335
|| || || ||| | | ||||| |||||| |||||||| ||||| | ||| ||| ||
Sbjct 103 TTGGACCCGTTCGT-CTCGCTAGTTGAATTTTCCGTTTCACCTCCTGGTGGATTCAAAGA 161
Query 336 TCATCCTCACAGAGGGTTTGAAACTGTTACATACGTACTAG-AGGGAGGAATCACTCACC 394
||||||||||||||| ||||||| ||| |||||| | | | | ||||| |||| |||||
Sbjct 162 TCATCCTCACAGAGGTTTTGAAAGTGTCACATACAT-GTTGCAAGGAGGCATCATTCACC 220
Query 395 AAGACTTCAAAGGTCACAAGGGTACAATATATGCTGGTGATGTTCAGTGGATGACTGCAG 454
||||||| || ||| | || |||||||| ||| || ||||||||||||||||| ||||
Sbjct 221 AAGACTTTAATGGTAATAAAGGTACAATCCATGAAGGAGATGTTCAGTGGATGACAGCAG 280
Query 455 GAAGAGGAATCATTCATTCTGAAATGCCTGAAGAAGAAGTCAACAAAGGTTTACAACTTT 514
||||||||||||||||||||||||||||||||||| |||||||||| || ||||| ||||
Sbjct 281 GAAGAGGAATCATTCATTCTGAAATGCCTGAAGAACAAGTCAACAAGGGGTTACAGCTTT 340
Query 515 GGATCAATCTTTCCT-CCAACGAGAAAATGATAGAACC-AAACTACCAAGA-ACTGTCGC 571
||||||| || ||| ||| || |||||||| || || ||| | | ||| | |||||
Sbjct 341 GGATCAACCTC-CCTTCCAGTGACAAAATGATGGAGCCTAAAA-ATCTAGATA-TGTCG- 396
Query 572 A-TTCAGACATACCAAAAGCAGAACAAAACGGTGTTGAAGTCAAAGTCATTGCAGGAGAA 630
| |||||| || || | |||||| || | || || || ||||||||||| || |||||
Sbjct 397 AGTTCAGAGATTCCTAGAGCAGATGAATATGGAGTAGAGGTCAAAGTCATAGCTGGAGAG 456
Query 631 TCAATGGGAATTCAA-TCACCTGTT-TACACAAGAACACCTACT-ATGTTCCTCGA-TTT 686
||||||||| | ||| || ||| || ||||||| |||||| | | |||||||| || |||
Sbjct 457 TCAATGGGAGT-CAAATCTCCT-TTCTACACAAAAACACC-AGTCATGTTCCTGGACTTT 513
Query 687 CACTCTCCAACCAGGAGCTCAAATCCACCAGAATGTTCCAGAATCTTGGAACGCATTTGC 746
|||||| | ||| ||| ||||| |||||||| |||||||| || |||| ||| |||||
Sbjct 514 -ACTCTCGATCCAAGAGTTCAAACCCACCAGACCGTTCCAGAGTCATGGACCGCCTTTGC 572
Query 747 TTACATTCTAGAGAG-CGGTGAAGGCGGCGGCGTTTTCAGTTCCTCGAACTCTTCGC-CT 804
|||||| |||| || || |||||||| | ||| || |||||| ||||||| | |
Sbjct 573 CTACATTATAGA-AGGCGATGAAGGCGT-G---TTT--AGCTCCTCGGACTCTTC-CAC- 623
Query 805 ATTCCA-GCACACAGTGTTGTGGTGTTCGGACCAGGGAATGATGGTGTTAGCGTGTGGAA 863
| | || ||||| | |||||||||||| ||| ||||| | || | | | |||||||||||
Sbjct 624 AGTACAAGCACATAATGTTGTGGTGTTTGGAACAGGGGACGAAG-T-T-AGCGTGTGGAA 680
Query 864 CAAGTCAT-CTTCAA-AGCAATTGAGGTT-TGTGTTGATTGCTGGAGAACCGATTGGTGA 920
|| |||| || | | | | |||||||| | |||||||||| || ||||||||||| ||
Sbjct 681 CACGTCAAGCT-CTAGATCG-TTGAGGTTCT-TGTTGATTGCAGGGGAACCGATTGGCGA 737
Query 921 ACCGGTGGTTCAATACGGTCCGTTCGTGATGAA-TACTCAAGCTGAGATTGATATGACCA 979
|| |||||| | || || || |||||||| | | |||||||||||||||||||| |
Sbjct 738 GCCTGTGGTTGAGCGTGGGCCATTTGTGATGAACT-CACAAGCTGAGATTGATATGACGA 796
Query 980 TTGAAG-ATTATCACTA-TGGTAAGAATGGCTTCGAAATGGCCAAGTATTGGAGGTCA 1035
|| | | | |||| || || |||||||||| |||||||||||| |||||||||||
Sbjct 797 TT-AGGGACTATCG-TAATGCCCAGAATGGCTTTGAAATGGCCAAGCATTGGAGGTCA 852
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43040773293
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5