BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G43130.1

Length=922
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg935207 jgi|Araly1|935207|scaffold_403195.1                       1116    0.0  


> Ahg935207 jgi|Araly1|935207|scaffold_403195.1
Length=682

 Score = 1116 bits (604),  Expect = 0.0
 Identities = 654/678 (96%), Gaps = 3/678 (0%)
 Strand=Plus/Plus

Query  20   agaagaaggagaaatgtcagacgacgacgagagaggcgaagagTACCTCTTCAAGATTGT  79
            |||||||||||||||||| |  |||||||||||||| |||||||||||||||||||||||
Sbjct  8    AGAAGAAGGAGAAATGTC-G--GACGACGAGAGAGGTGAAGAGTACCTCTTCAAGATTGT  64

Query  80   TATCATCGGTGATTCCGCCGTCGGCAAATCCAATCTCCTCACTCGCTACGCCCGTAACGA  139
            ||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  65   TATCATCGGAGACTCCGCCGTCGGCAAATCCAATCTCCTCACTCGCTACGCCCGTAACGA  124

Query  140  GTTCAATCCCAATTCCAAAGCCACTATCGGCGTCGAGTTTCAGACTCAGAGCATGCTCAT  199
            |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct  125  GTTCAATCCCAATTCCAAAGCCACAATCGGCGTCGAGTTTCAGACTCAGAGCATGCTCAT  184

Query  200  CGACGGCAAAGAGGTCAAAGCTCAGATTTGGGATACCGCCGGTCAGGAACGCTTCCGCGC  259
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct  185  CGACGGCAAAGAGGTCAAAGCTCAGATTTGGGATACCGCCGGTCAGGAACGCTTCCGTGC  244

Query  260  CGTTACATCTGCTTATTACCGTGGCGCCGTTGGAGCCCTCGTCGTCTACGATATCACTCG  319
            |||||| ||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct  245  CGTTACTTCTGCTTATTACCGTGGCGCCGTTGGAGCTCTCGTCGTCTACGACATCACTCG  304

Query  320  TAGCTCCACTTTCGAAAACGTCGGTCGCTGGCTCGATGAGCTCAACACTCATTCTGATAC  379
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  305  TAGCTCCACTTTCGAAAACGTCGGTCGCTGGCTCGATGAGCTCAACACTCATTCTGATAC  364

Query  380  AACAGTAGCAAAAATGCTTATTGGGAACAAATGTGATCTCGAGAGCATAAGAGCGGTGAG  439
            |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct  365  AACAGTAGCAAAAATGCTTATTGGAAACAAATGTGATCTCGAGAGCATAAGAGCGGTGAG  424

Query  440  TGTTGAGGAAGGCAAGAGTCTTGCTGAGTCTGAAGGTTTGTTTTTCATGGAGACCTCTGC  499
            |||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct  425  TGTTGAGGAAGGCAAGAGTCTTGCTGAGTCTGAAGGATTGTTTTTCATGGAGACATCTGC  484

Query  500  GTTGGACTCGACCAATGTAAAGACGGCTTTCGAGATGGTTATTCGGGAGATCTATAGCAA  559
            | |||||||||||||||| ||||||||||| |||||||||| ||||||||||||||| ||
Sbjct  485  GCTGGACTCGACCAATGTGAAGACGGCTTTTGAGATGGTTAGTCGGGAGATCTATAGTAA  544

Query  560  CATTAGTCGAAAGCAATTGAACTCTGATTCTTACAAAGAGGAGCTGACTGTGAATCGTGT  619
            ||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| ||
Sbjct  545  CATTAGTCGAAAGCAGTTGAACTCTGATTCTTACAAAGAGGAGCTGACCGTGAATCGAGT  604

Query  620  TAGCTTGGTTAAGAACGAGAACGAAGGGACAAAGACATTCTCTTGCTGTTCGAGGTAACA  679
            ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct  605  TAGCTTGGTTAAGAACGAGAACGAAGGAACAAAGACATTCTCTTGCTGTTCGAGGTAACA  664

Query  680  TCTTTGTAACGGTTTCTC  697
            |||||||| |||||||||
Sbjct  665  TCTTTGTACCGGTTTCTC  682



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 34196256549


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5