BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G43150.1
Length=1047
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483416 jgi|Araly1|483416|fgenesh2_kg.4__2476__AT2G43150.1 1568 0.0
> Ahg483416 jgi|Araly1|483416|fgenesh2_kg.4__2476__AT2G43150.1
Length=1036
Score = 1568 bits (849), Expect = 0.0
Identities = 976/1037 (94%), Gaps = 10/1037 (1%)
Strand=Plus/Plus
Query 1 ATGGCGACTCCGGCATGGAGTCATGCCAAGGCTCAATGGGTAGTCGCCATGTTGGCGTTA 60
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1 ATGGCGACTCCGGCATGGAGTCATGCCAAGGCTCAATGGGTAGTGGCCATGTTGGCGTTA 60
Query 61 CTCGTTGGCTCGGCTATGGCTACCGAACCTTATTACTATAGCTCTCCTCCACCACCGTAT 120
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 61 CTCGTTGGCTCGGCTATGGCTACCGAACCTTATTACTATAGTTCTCCTCCACCACCGTAC 120
Query 121 GAGTATAAATCTCCACCTCCTCCGGTTAAATCTCCTCCACCGCCTTATGAATATAAATCA 180
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 121 GAGTATAAATCTCCACCTCCTCCGGTTAAATCTCCTCCACCTCCTTATGAATATAAATCA 180
Query 181 CCACCACCTCCGGTTAAGTCTCCTCCACCACCGTATTACTATCATTCACCGCCGCCGCCA 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CCACCACCTCCGGTTAAGTCTCCTCCACCACCGTATTACTATCATTCACCGCCGCCGCCA 240
Query 241 GTGAAAtcccctccccctccttatgtttacagctctcctcctcctccggtgaagtcccct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 241 GTGAAATCCCCTCCCCCTCCTTATGTTTACAGCTCTCCTCCTCCTCCGGTGAAATCTCCT 300
Query 301 cctcccccATACTACTACCATTCACCGCCTCCTCCGGTGAAGTCTCCTCCTCCTCCATAC 360
|| || || ||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 301 CCACCACCGTACTACTACCATTCACCACCTCCTCCGGTGAAGTCTCCTCCTCCCCCATAC 360
Query 361 TACTACCATTCACCACCTCCTCCGGTGAAAtccccaccaccaccatattactaccattca 420
||||||||||||||||| || ||||||||||| |||||||||||||| ||||||||||||
Sbjct 361 TACTACCATTCACCACCCCCACCGGTGAAATCTCCACCACCACCATACTACTACCATTCA 420
Query 421 ccacctcctccggtgaaatccccaccaccaccaTACTACTACCATTCAcctcctcctcct 480
||||||||||||||||||||||| |||||||||||||||||||| ||||| || |||||
Sbjct 421 CCACCTCCTCCGGTGAAATCCCCTCCACCACCATACTACTACCACTCACCACCCCCTCCG 480
Query 481 gtgaaatctcctcctcctccatattattaccactccccacctcctccGGTGAAATCCCCA 540
||||| || |||||||| ||||| || ||||| || ||||| ||||| || || || ||
Sbjct 481 GTGAAGTCCCCTCCTCCCCCATACTACTACCATTCACCACCCCCTCCAGTCAAGTCTCCT 540
Query 541 CCACCACCATACCTTTACAGCTCTCCACCACCACCGGT-AA------A--ATCTCCCCCA 591
|| |||||||||| ||||||||| |||||||| || || || | | ||||||||
Sbjct 541 CCTCCACCATACCATTACAGCTCACCACCACCTCCAGTCAAGTCTCCACCACCTCCCCCA 600
Query 592 CCTCCTGTCTACATCTACGCTTCTCCCCCACCTCCCACACATTACTAGGCTCATCAAATT 651
||||| || ||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 601 CCTCCCGTTTACATCTACGCTTCTCCCCCACCTCCCACACATTACTAGGCTCGTCAAATT 660
Query 652 CAACAAAATTTCCCCATTATTCAAGTTTTCTTTTAAAAAATGAAATAAAGGAAGGGTCAA 711
|||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 CAACAACATTTCCCAATTATTCAAGTTTTCTTTTAAAAAATGAAATAAAGGAAGGGTCAA 720
Query 712 AGTCAAAGAGAAGAAGAAGTGAACCAAATAAGGATCGTGGCGTGGAAATCAGAAACAAAA 771
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 AGTCAAAGAGAAGAAGAAGTGAACCAAATAAGGATCGTGGCGTGGAAATCAGAAACAAAA 780
Query 772 CATCTCTAACAACGATCCACATCACTTCCTCTTCTTCAATGTCGCTCATCTTCCACTTGT 831
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 CATCTATAACAACGATCCACATCACTTCCTCTTCTTCAATGTCGCTCATCTTCCACTTGT 840
Query 832 GCATCATTATCTTTGCGTCTTCGTCAAGTCAAATTGTTTCCAAGACCCTTTTAGATCGTA 891
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 841 GCATCATTATCTTTGCGTCTTCATCAAGTCAAATTGTTTCCAAGACCCTTTTAGATCGTA 900
Query 892 TCATACTCCTCTTTGTTCCCTTTTGTTGTTAAGTGAAAAAATGGGTTTTGGTAATTTAAT 951
|||||||| |||||||||||||||||||||| ||||||||| ||||| ||||||||||||
Sbjct 901 TCATACTCTTCTTTGTTCCCTTTTGTTGTTAGGTGAAAAAA-GGGTTCTGGTAATTTAAT 959
Query 952 TGTTGTGCATACATTTTCTATTTTGTTATTCTTCCGTTAATGTAATGAAAGAGTTGTTAG 1011
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 960 TGTTGTGCATACATTTTCTATTTTGTTATTCTTCCGTTGATGTACTGAAAGAGTTGTTAG 1019
Query 1012 CATATAAAACAAAGTTC 1028
|||||||||||||||||
Sbjct 1020 CATATAAAACAAAGTTC 1036
Score = 387 bits (209), Expect = 1e-106
Identities = 370/448 (83%), Gaps = 10/448 (2%)
Strand=Plus/Plus
Query 103 TCTCCTCCACCACCGTATGAGTATAAATCTCCACCTCCTCCGGTTAAATCTCCTCCACCG 162
||||||||||| || ||||| |||||||| ||||| ||||||||||| |||||||||||
Sbjct 151 TCTCCTCCACCTCCTTATGAATATAAATCACCACCACCTCCGGTTAAGTCTCCTCCACCA 210
Query 163 CCTTATGAATATAAATCACCACCACCTCCGGTTAAGTCTCCTCCACCACCGTAT-TACTA 221
|| ||| | ||| | ||||| || || || || || || ||||| || || ||| | ||
Sbjct 211 CCGTATTACTATCATTCACCGCCGCCGCCAGTGAAATCCCCTCCCCCTCCTTATGT-TTA 269
Query 222 TCA-TTCACCGCCGCCGCCAGTGAAAtcccctccccctccttatgt-tta-cagctctcc 278
|| || || || || || |||||||| ||||| || || || | || || || ||
Sbjct 270 -CAGCTCTCCTCCTCCTCCGGTGAAATCTCCTCCACCACCGTA-CTACTACCA-TTCACC 326
Query 279 tcctcctccggtgaagtcccctcctcccccATACTACTACCATTCACCGCCTCCTCCGGT 338
||||||||||||||||| ||||||||||||||||||||||||||||| || || |||||
Sbjct 327 ACCTCCTCCGGTGAAGTCTCCTCCTCCCCCATACTACTACCATTCACCACCCCCACCGGT 386
Query 339 GAAGTCTCCTCCTCCTCCATACTACTACCATTCACCACCTCCTCCGGTGAAAtccccacc 398
||| ||||| || || ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 387 GAAATCTCCACCACCACCATACTACTACCATTCACCACCTCCTCCGGTGAAATCCCCTCC 446
Query 399 accaccatattactaccattcaccacctcctccggtgaaatccccaccaccaccaTACTA 458
||||||||| |||||||| |||||||| ||||||||||| ||||| || || ||||||||
Sbjct 447 ACCACCATACTACTACCACTCACCACCCCCTCCGGTGAAGTCCCCTCCTCCCCCATACTA 506
Query 459 CTACCATTCAcctcctcctcctgtgaaatctcctcctcctccatattattacca-ctccc 517
|||||||||||| || ||||| || || ||||||||||| ||||| ||||| | ||| |
Sbjct 507 CTACCATTCACCACCCCCTCCAGTCAAGTCTCCTCCTCCACCATACCATTAC-AGCTCAC 565
Query 518 cacctcctccGGTGAAATCCCCACCACC 545
|||| ||||| || || || ||||||||
Sbjct 566 CACCACCTCCAGTCAAGTCTCCACCACC 593
Score = 339 bits (183), Expect = 3e-92
Identities = 334/407 (82%), Gaps = 10/407 (2%)
Strand=Plus/Plus
Query 151 TCTCCTCCACCGCCTTATGAATATAAATCACCACCACCTCCGGTTAAGTCTCCTCCACCA 210
||||||||||| || || || |||||||| ||||| ||||||||||| |||||||||||
Sbjct 103 TCTCCTCCACCACCGTACGAGTATAAATCTCCACCTCCTCCGGTTAAATCTCCTCCACCT 162
Query 211 CCGTATTACTATCATTCACCGCCGCCGCCAGTGAAAtcccctccccctccttatgt-tta 269
|| ||| | ||| | ||||| || || || || || || ||||| || || ||| | ||
Sbjct 163 CCTTATGAATATAAATCACCACCACCTCCGGTTAAGTCTCCTCCACCACCGTAT-TACTA 221
Query 270 -cagctctcctcctcctccggtgaagtcccctcctccc-ccATACT-ACTACCA-TTCAC 325
|| || || || || || ||||| |||||||| ||| || || | || || || |
Sbjct 222 TCA-TTCACCGCCGCCGCCAGTGAAATCCCCTCC-CCCTCCTTA-TGTTTA-CAGCTCTC 277
Query 326 CGCCTCCTCCGGTGAAGTCTCCTCCTCCTCCATACTACTACCATTCACCACCTCCTCCGG 385
| |||||||||||||| |||||||| || || ||||||||||||||||||||||||||||
Sbjct 278 CTCCTCCTCCGGTGAAATCTCCTCCACCACCGTACTACTACCATTCACCACCTCCTCCGG 337
Query 386 TGAAAtccccaccaccaccatattactaccattcaccacctcctccggtgaaatccccac 445
|||| || || || || ||||| ||||||||||||||||| || ||||||||||| ||||
Sbjct 338 TGAAGTCTCCTCCTCCCCCATACTACTACCATTCACCACCCCCACCGGTGAAATCTCCAC 397
Query 446 caccaccaTACTACTACCATTCAcctcctcctcctgtgaaatctcctcctcctccatatt 505
||||||||||||||||||||||||| |||||||| |||||||| ||||| || ||||| |
Sbjct 398 CACCACCATACTACTACCATTCACCACCTCCTCCGGTGAAATCCCCTCCACCACCATACT 457
Query 506 attaccactccccacctcctccGGTGAAATCCCCACCACCACCATAC 552
| |||||||| ||||| ||||||||||| ||||| || || ||||||
Sbjct 458 ACTACCACTCACCACCCCCTCCGGTGAAGTCCCCTCCTCCCCCATAC 504
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38961621174
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5