BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G43160.3
Length=3351
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483418 jgi|Araly1|483418|fgenesh2_kg.4__2478__AT2G43160.3 2940 0.0
Ahg486396 jgi|Araly1|486396|fgenesh2_kg.5__2388__AT3G59290.1 963 0.0
> Ahg483418 jgi|Araly1|483418|fgenesh2_kg.4__2478__AT2G43160.3
Length=3234
Score = 2940 bits (1592), Expect = 0.0
Identities = 1726/1787 (97%), Gaps = 23/1787 (1%)
Strand=Plus/Plus
Query 157 CTTGACAGATCCACGATCCGATTCTGGTCAAATTTTACA-TTTCTGCAGACTCCATAGAA 215
||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct 81 CTTGACAGATCCACGATCCGATTCTGGTCAAATTTTACATTTTGTGCAGACTCCATAGAA 140
Query 216 GGTGACATTTGTTTAAGATACTCTTGTTCCTGGAACACATACGAAGATGAAGAAAGTCTT 275
|||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 141 GGTG---TTTGTTTTAGATACTCTTGTTCCTGGAACACATACGAAGATGAAGAAAGTCTT 197
Query 276 CGGACAAACTGTTAGAGACCTTAAGAGAGAGGTCAACAAGAAAGTGCTCAAAGTTCCTGG 335
||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 198 CGGCCAAACTGTCAGAGACCTTAAGAGAGAGGTCAACAAGAAAGTGCTCAAAGTTCCTGG 257
Query 336 AGTAGAACAGAAGGTTCTAGATGCTACTAGTAATGAGCCATGGGGTCCACATGGATCACT 395
||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 258 AGTTGAACAGAAGGTTCTAGATGCTACTAGCAATGAGCCATGGGGTCCACATGGATCACT 317
Query 396 TCTTGCTGATCTTGCGCAAGCTTCCAGAAATTATCATGAATATCAGCTGATCATGGTGGT 455
|||||| ||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 318 TCTTGCCGATCTTGCGCAAGCTTCAAGAAATTATCATGAATACCAGCTGATCATGGTGGT 377
Query 456 CATATGGAAACGCCTTAGCGACACCGGAAAAAACTGGCGGCATGTCTATAAGGCTTTGAC 515
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 378 CATATGGAAACGCCTTAGCGACACCGGGAAAAACTGGCGGCATGTCTATAAGGCTTTGAC 437
Query 516 AGTTTTGGAGTACATGGTAGGCCATGGATCAGAACGTGTTATAGACGAGATTAGAGAACG 575
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 438 AGTTTTGGAGTACATGGTAGGTCATGGATCAGAACGTGTTATAGACGAGATTAGAGAACG 497
Query 576 TGCATATCAAATTTCGACATTGTCCGATTTTCAGTATATTGATTCCGGTGGTAGAGATCA 635
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 498 TGCATATCAAATTTCGACATTGTCCGATTTTCAGTATATTGATTCCGGTGGTAGAGATCA 557
Query 636 AGGAAGCAATGTTAGGAAGAAATCACAGAGCCTGGTGGCTTTGGTGAATGACAAGGAAAG 695
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 558 AGGAAGCAATGTTAGGAAGAAATCACAGAGCCTGGTGGCGTTGGTGAATGACAAGGAAAG 617
Query 696 AATAGCTGAAGTCAGACAGAAGGCTGCTGCTAATAGAGATAAGTATCGCAGCTCAGCACC 755
||||||||| ||||||||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct 618 AATAGCTGAGGTCAGACAGAAGGCTTCTGCTAACAGAGATAAGTATCGCAGCTCAGCACC 677
Query 756 AGGTGGGATGTATAAGCCTTCAGGCGGATATGGGGATAAATATGATTACGGAAGCCGGGA 815
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 678 AGGTGGGATGTATAAGCCTTCAGGCGGATATGGGGATAAATATGATTACGGAAGCCGGGA 737
Query 816 TGAAGAGCGAAGTAGTTATGGAAGAGAAAGAGAATATGGTTACAGAGATGATGATAGAAA 875
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 738 TGAAGAGCGAAGTAGTTATGGAAGAGAAAGAGAATATGGTTACAGAGATGATGATAGAAA 797
Query 876 TAGTCGTGATGGAGATCGTCATTCCAGGGACTCTGAAGACCGGTATGGGAGAGATGGTAA 935
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 798 TAGTCGTGATGGAGATCGTCATTCCAGAGACTCTGAAGACCGGTATGGGAGAGATGGTAA 857
Query 936 TAGGGATGATGATTACAGGGGAAGGAGCAGAAGTGTTGATAACTA----T--GGGTCACG 989
||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 858 TAGGGATGATGATTACAGGGGAAGGAGCAGAAGTGTTGATAACTACCAATATGGGTCACG 917
Query 990 AGGTAGGAGTTCGGAAAGAGAGCGGGAGGATGATGGCCATTCTTCATCACGGGGCAGTGG 1049
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 918 AGGTAGGAGTTCGGAAAGGGAGCGGGAGGATGATGGCCATTCTTCATCACGGGGCAGTGG 977
Query 1050 TGCTCGAGCTGATGATAATTCTCAGGATGGGAGAGGGGGGCTCCAGAGGAAGTTTTCTGA 1109
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 978 TGCTCGAGCTGATGATAATTCTCAGGATGGGAGAGGGGGGCTCCAGAGGAAGTTTTCTGA 1037
Query 1110 ACAAAATATTGGCGCTCCACCCAGTTATGAAGAAGCTGTCAGTGATTCACGCAGCCCTGT 1169
||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 1038 ACAAAATATTGGCGCTCCACCCAGTTACGAAGAAGCTGTCAGTGAATCACGCAGCCCTGT 1097
Query 1170 ATATAGTGAAAGGGATGGTGGGGAGACCCCACAAGTTACCGCTCCAGGAGCTGCTTCTCC 1229
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1098 ATATAGTGAAAGGGATGGTGGGGAGACCCCACAAGTTACTGCTCCAGGAGCTGCTTCTCC 1157
Query 1230 TCCTCCCCCACAAGTTGCTGCTCCAGAGGCTGCTTCTCCTCCAACTGGAACCAACACAGC 1289
|||||||||||||||||||||||| | | |||| |||||||||||||||||||
Sbjct 1158 TCCTCCCCCACAAGTTGCTGCTCC------T--T-CTCCGCCAACTGGAACCAACACAGA 1208
Query 1290 CAATACAA-CTGCTACTTTTGTTAATGAATCACCTTCTCAGAAAGTTGAGACTTTCGATG 1348
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1209 CAATA-AAGCTGCTACTTTTGTTAATGAATCACCTTCTCAGAAAGTTGAGACTTTCGATG 1267
Query 1349 AATTTGATCCACGCAGTGCGTTTTCAGCTGGCCCTCCAGCATATGCATCTACAGATGGTG 1408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1268 AATTTGATCCACGCAGTGCGTTTTCAGCTGGCCCTCCAGCATATGCATCTACAGATGGTG 1327
Query 1409 TTACAGCTCCTCCAACTGTGACTTCTATGTCTGCCCCTACCACCTCAAACAGTGTTGAGA 1468
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1328 TTACAGCTCCTCCAACTGTGACTTCTATGTCTGCCCCTCCCACCTCAAACAGTGTTGAGA 1387
Query 1469 TGGACTTGCTTGGTTCCCTTGCAGACGTATTTTCATCAAACGCATTGGCCATTGTACCAG 1528
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1388 TGGACTTGCTTGGCTCCCTTGCAGACGTATTTTCATCAAACGCATTGGCCATTGTACCAG 1447
Query 1529 CTGATTCTATCTATGTTGAAACCAATGGACAAGCAAACGCTGGTCCAGCTCCATCGTTTT 1588
||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1448 CTGATTCTACCTATGTTGAAACCGATGGACAAGCAAACGCTGGTCCAGCTCCATCGTTTT 1507
Query 1589 CTACATCTCAGCCATCAACTCAGTCATTTGATGACCCATTTGGTGACTCTCCTTTCAAGG 1648
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 1508 CTACATCTCAGCCATCAACTCAGTCATTTGATGACCCGTTTGGTGACTCTCCTTTCAAAG 1567
Query 1649 CCTTCACTTCTACTGACACCGACTCAACCCCACAGCAGAATTTTGGAGCTTCTTTCCAGC 1708
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1568 CCTTCACTTCTACTGACACCGACTCAATCCCACAGCAGAATTTTGGAGCTTCTTTCCAGC 1627
Query 1709 CACCACCTCCAGCCTTCACTTCAGAGGTCTCACATCCTGATACTGCTCATAACTTTGGCT 1768
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1628 CACCACCTCCAGCCTTCACTTCAGAGGTCTCACATCCTGATACTGCTCATAACTTCGGCT 1687
Query 1769 TTGGGGACTCATTTTCCGCCGTTGCCAATCCTGATCCTGCTTCTCAGAATGTGCAACCTC 1828
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1688 TTGGAGACTCATTTTCCGCCGTTGCCAATCCTGATCCTGCTTCTCAGAATGTGCAACCTC 1747
Query 1829 CATCGAACTCACCAGGTTTTCCTCAAGAGCAATTTGCTACATCTCAGAGTGGTATTGATA 1888
||||||||||||||||||||||||||||||| |||||||||||||||| |||||| |||
Sbjct 1748 CATCGAACTCACCAGGTTTTCCTCAAGAGCAGTTTGCTACATCTCAGAATGGTATAGATG 1807
Query 1889 TCCTCGCTGGCATTCT-CCCACCATCTGGACCTCCAGTACAATCGGG 1934
| || ||||||||||| ||||| ||||| ||||||||||||||||||
Sbjct 1808 TTCTTGCTGGCATTCTTCCCAC-ATCTGAACCTCCAGTACAATCGGG 1853
Score = 2078 bits (1125), Expect = 0.0
Identities = 1272/1341 (95%), Gaps = 18/1341 (1%)
Strand=Plus/Plus
Query 1991 TTCATTCTCAGCCGCCGGTATCTACAGCTCCAAACCTGCCTGGACAAACTCCATTTGGAC 2050
||| ||||||||||||||||||||||||||||||| |||| |||||||||||||||||||
Sbjct 1911 TTC-TTCTCAGCCGCCGGTATCTACAGCTCCAAACATGCCCGGACAAACTCCATTTGGAC 1969
Query 2051 AAGCTGTTCAACCATATAACATGGTTCCTCATTCTCAAAATATGACTGGAGCCATGCCAT 2110
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1970 AAGCTGTTCAACCATATAACATGGTTCCTCATTCTCAAAATATGACTGGAGCCATGCCAT 2029
Query 2111 TTAATAGTGGAGGCTTCATGCACCAGCCGGGCTCACAAACTCCTTACTCTACCCCAAGTG 2170
|||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2030 TTAACAGTGGAGGCTTCATGCACCAGCCGGGCTCACAAACTCCTTACTCTAACCCAAGTG 2089
Query 2171 GACCAGCTGGTCAGTTCATGGCACACCAAGGTCATGGAATGCCGCCATCCCATGGTCCAC 2230
||||||||||||||||||| ||||||||||||||||||||||| || |||||||||||||
Sbjct 2090 GACCAGCTGGTCAGTTCATAGCACACCAAGGTCATGGAATGCCACCTTCCCATGGTCCAC 2149
Query 2231 AACGAACTCAATCCGGACCTGTTACTCTGCAAGGGAACAACAATGTCATGGGAGACATGT 2290
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 2150 AACGAACTCAATCCGGGCCTGTTACTCTGCAAGGGAACAACAATGTCATGGGAGACATGT 2209
Query 2291 TCTCGCAAGCTACGCCCAACTCCTTGACGTCATCATCATCTCATCCAGATCTCACACCTT 2350
| || |||||| |||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 2210 TTTCACAAGCTGCGCCGAACTCCTTGACGTCATCATCATCTCATCCAGATCTCACGCCTT 2269
Query 2351 TAACAGGAGCAATTGAGATTGTTCCTCCGCCTCAGAAAAAGTTTGAGCCAAAATCATCAG 2410
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2270 TAACAGGAGCAATTGAGATTGTTCCCCCGCCTCAGAAAAAGTTTGAGCCAAAATCATCAG 2329
Query 2411 TCTGGGCAGACACGTTGAGCAGGGGGCTTGTTAACTTTAACATATCTGGATCTAAAACAA 2470
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2330 TCTGGGCAGACACGTTGAGCAGGGGGCTTGTTAACTTTAACATATCTGGATCTAAAACAA 2389
Query 2471 ATCCATTGGCAGACATAGGAGTTGACTTCGAGGCGATCAACAGGAGAGAGAAACGGCTGG 2530
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2390 ATCCATTGGCAGACATAGGAGTTGACTTCGAGGCGATCAACAGGAGAGAGAAACGGCTGG 2449
Query 2531 AGAAACAAACAAACACACCAGCAACATCGACTATCAATATGGGTAAAGCCATGGGATCAG 2590
|||||| ||||||||||||||||||||| |||||||| ||||||||||| ||||||||||
Sbjct 2450 AGAAACCAACAAACACACCAGCAACATCAACTATCAACATGGGTAAAGCTATGGGATCAG 2509
Query 2591 GCACTGGCTTAGGGCGTTCTGGTGCAACTGCTATGAGACCTCCACCTAATCCAATGACAG 2650
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 2510 GCACTGGCTTAGGGCGTTCTGGTGCAACTGCTATGAGGCCTCCACCTAATCCAATGACAG 2569
Query 2651 GCTCTGGCATGCCCATGGGCGGAGGAATGGGTGTTGGTAGCTACGGAGGTATGAACCAGA 2710
|||| |||||||||||||||||||||||||||||||||||||| |||| ||||||||| |
Sbjct 2570 GCTCCGGCATGCCCATGGGCGGAGGAATGGGTGTTGGTAGCTATGGAGTTATGAACCAAA 2629
Query 2711 ACCAACCCATGGGTATGGGTATGGGGGCCGGAATGAACCAAAACCAACCGATGGGTATGG 2770
|||||||||||||||||||||||||||| |||||||||||| ||||||| ||||||||||
Sbjct 2630 ACCAACCCATGGGTATGGGTATGGGGGCTGGAATGAACCAACACCAACCAATGGGTATGG 2689
Query 2771 GAATGGGACCCGGCATGAACATGAACATGAACATGGGAGGATATGGCCAAGGCTATCCGA 2830
||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 2690 GAATGGGACCCGGCATGAACATGAACATG-----GG-AGGATATGGCCAAGGCTATCCGA 2743
Query 2831 TGCAACCACAAAACCCAGGGATGGTACCTAGCCCAAACATGCCTGGCAATAACTACAATC 2890
||||||||||||||||||||||||| ||| ||||||||| | |||||| ||||||||||
Sbjct 2744 TGCAACCACAAAACCCAGGGATGGTCCCTGGCCCAAACA--C-TGGCAACAACTACAATC 2800
Query 2891 CGATGATGGGTCAAGGTGGTTACAACCCTCAACAATCCTATGGTGGTGGATACCGGTAAG 2950
| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 2801 CCATGATGGGTCAAGGTGGTTACAACCCTCAACAATCCTACGGTGGTGGATACCGGTAAG 2860
Query 2951 ATCAAGCCAAACATGATGCACTTGACTTCATTCGTGTAATCAAGAATACGCTCG-CCTGT 3009
|||||||||| ||| | |||||| |||||||| || ||||||||||| |||||| || |
Sbjct 2861 ATCAAGCCAAGCATTACGCACTT-ACTTCATTTGTATAATCAAGAATCCGCTCGTCC-GA 2918
Query 3010 GCTTTTTCTTTACTCTGGGATATGTAATATCAGTCGATAAAAGTACTCAGGTTACATTAT 3069
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2919 GCTTTTCCTTTACTCTGGGATATGTAATATCAGTCGATAAAAGTACTCAGGTTACATTAT 2978
Query 3070 TCATCCAGGCAACACGGCTCCACGAATTTTCTTCTCTGTTTGTTCTTGCCTTACTCGTCA 3129
|||||| ||| ||||||||||||| |||||||||||||||||||||||||||| || |||
Sbjct 2979 TCATCCTGGCTACACGGCTCCACGGATTTTCTTCTCTGTTTGTTCTTGCCTTAATCTTCA 3038
Query 3130 CTCATCATTCAtttttatttttttCTGGTTTGGACCAAATTGAGAGCTTGTTGTGAAATT 3189
|||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 3039 GTCATCATTCATTTTTATTTTTT-CTGGTATGGACCAAATTGAGAGCTTGTTGTGAAATT 3097
Query 3190 TGTACCAGTGTGAGAGTGGCAAACCTTGCTCGGGTCTGCCCtttttttGTTATATGCATA 3249
|||||| | ||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 3098 TGTACC-G-GTGAGAGTGGCAAACCTTGCTCGGGTCTGCCCTTTTT--GTTATATGCATA 3153
Query 3250 TAATTTGATATATACACATTCACTTCTATTTCTTTATTTTGAAGATGTGTAATACATTTC 3309
|||||||||||||||||||| |||||| |||||||||||||||||||||||| ||||||
Sbjct 3154 TAATTTGATATATACACATTTACTTCTGTTTCTTTATTTTGAAGATGTGTAAAACATTTT 3213
Query 3310 TCATTCACGGAACAAATAAAA 3330
|||| ||||||||||||||||
Sbjct 3214 TCATCCACGGAACAAATAAAA 3234
> Ahg486396 jgi|Araly1|486396|fgenesh2_kg.5__2388__AT3G59290.1
Length=3590
Score = 963 bits (521), Expect = 0.0
Identities = 854/1008 (85%), Gaps = 50/1008 (5%)
Strand=Plus/Plus
Query 258 GAAGATGAAGAAAGTC-TTCGGACAAACTGTTAGAGACCTTAAGAGAGAGGTCAACAAGA 316
||| |||||||||| | || || ||||| || |||||||| ||||||| |||||||||||
Sbjct 181 GAATATGAAGAAAG-CATTTGGTCAAACCGTCAGAGACCTCAAGAGAGGGGTCAACAAGA 239
Query 317 AAGTGCTCAAAGTTCCTGGAGTAGAACAGAAGGTTCTAGATGCTACTAGTAATGAG-CCA 375
||||||| ||||| |||||| ||||||||||||||||||||||||| || |||||| ||
Sbjct 240 AAGTGCTTAAAGTACCTGGAATAGAACAGAAGGTTCTAGATGCTACCAGCAATGAGTCC- 298
Query 376 TGGGGTCCACATGGATCACTTCTTGCTGATC-TTGCGCAAGCTTCCAGAAATTATCATGA 434
|||||||| ||||||||||||||||| || | |||| || ||||| ||||| || |||||
Sbjct 299 TGGGGTCCGCATGGATCACTTCTTGCGGA-CATTGCTCATGCTTCGAGAAACTACCATGA 357
Query 435 ATATCAGCTGATCATGGTG-GTCA-TATGGAAACGCCTTAGCGACACCGGAAAAAACTGG 492
||| ||||||| ||||| | || | |||||||||| ||||| ||| | |||||||| |||
Sbjct 358 ATACCAGCTGACCATGG-GAGT-ATTATGGAAACGTCTTAGTGACTCTGGAAAAAATTGG 415
Query 493 CGGCATGTCTATAAGGCTTTGACAGTTTTGGAGTACATGGTAGGCCATGGATCAGAACGT 552
|| |||||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 416 CGCCATGTCTATAAGGCATTGACAGTCTTGGAGTACATGGTAGGCCATGGATCAGAACGT 475
Query 553 GTTATAGACGAGATTAGAGAACGTGCATATCAAATTTCGACATTGTCCGATTTTCAGTAT 612
|| ||||| ||||||||||||| ||||||||||||| ||||||| || | |||||||||
Sbjct 476 GTCATAGAAGAGATTAGAGAACATGCATATCAAATTACGACATTATCTGGCTTTCAGTAT 535
Query 613 ATTGATTCCGGTGGTAGAGATCAAGGAAGCAATGTTAGGAAGAAATCACAGAGCCTGGTG 672
||||||||| | |||| ||||||||| |||||||| |||||||| | |||||||| |||
Sbjct 536 ATTGATTCCAGCGGTAAAGATCAAGGTAGCAATGTCAGGAAGAAGGCGCAGAGCCTTGTG 595
Query 673 GCTTTGGTGAATGACAAGGAAAGAATAGCTGAAGTCAGACAGAAGGCTGCTGCTAATAGA 732
|||||||| |||||||| ||||||||||| || |||||| |||||||||||||||| |||
Sbjct 596 GCTTTGGTTAATGACAAAGAAAGAATAGCGGAGGTCAGAGAGAAGGCTGCTGCTAACAGA 655
Query 733 GATAAGTATCGCAGCTCAGCACCAGGTGGGATGTATAAGCCTTCAGGCGGATATGGGGAT 792
|| || |||| | | | | | | ||| ||| ||| ||||| |||||||||||
Sbjct 656 GACAAATATC--A--TAA-CTC-A------ATGCATAGGCCGTCAGGAGGATATGGGGAC 703
Query 793 AAATATGATTACGGAAG-CCG----GGAT---GA-A-GA-G--CGAAGTAGTTATGGAAG 839
||||||||||||| ||| ||| ||| || | || | |||||||||||||| ||
Sbjct 704 AAATATGATTACG-AAGGCCGCTATGGAGACAGAGATGAAGGGCGAAGTAGTTATGGGAG 762
Query 840 AGAAAGAGAATATGGTTACAGAGATGATGATAGAAATAGTCGTGATGGAGATCGTCATTC 899
||| ||||||||||||||||| ||||||||||||||||||||||| || |||||| ||||
Sbjct 763 AGAGAGAGAATATGGTTACAGGGATGATGATAGAAATAGTCGTGACGGCGATCGTTATTC 822
Query 900 CAGGGACTCTGAAGACCGGTATGGGAGAGATGGTAATAGGGATGATGATTACAGGGGAAG 959
|| |||||||||||||| ||||| ||||||||||| ||||||||||| | | | |||||
Sbjct 823 TAGAGACTCTGAAGACCGATATGGAAGAGATGGTAACAGGGATGATGAATCCCGTGGAAG 882
Query 960 GAGCAGAAGTGTTGATAACTA---TGGGTCACGAGGTAGGAGTTCGGAAAGAGAGCGG-- 1014
|||||||||||||||||| || ||| ||| |||||||||| ||||| || || |||
Sbjct 883 GAGCAGAAGTGTTGATAATTACAATGGATCAAGAGGTAGGAGCTCGGACAGGGAACGGCC 942
Query 1015 ----GAGGATGATGGCCATTCTTCATCACGGGGCAGTGGTGCTCGAGCTGATGATAATTC 1070
|||||||||||||| || ||||| |||| ||||||||| |||||||||||| | ||
Sbjct 943 TATTGAGGATGATGGCCAATCCTCATCGCGGGACAGTGGTGCGCGAGCTGATGATCACTC 1002
Query 1071 TCAGGATGGGAGAGGGGGGCTCCAGAGGAAGTTTTCTGAACAAAATATTGG--C-GCTCC 1127
||| ||||||||||||||||| |||||||||| ||||||||||||||||| | |||||
Sbjct 1003 TCAAGATGGGAGAGGGGGGCTAGAGAGGAAGTTCTCTGAACAAAATATTGGTGCTGCTCC 1062
Query 1128 ACCCAGTTATGAAGAAGCTGTCAGTGATTCACGCAGCCCTGTATATAGTGAAAGGGATGG 1187
||| ||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||
Sbjct 1063 ACCTAGTTATGAAGAAGCTGTCAGTGAATCACGGAGCCCTGTATACAGTGAAAGGGATGG 1122
Query 1188 TGGGGAGACCCCACAAGTTAC-CGCTCCAGGAGCTGCTTCTCCTCCTC 1234
||| ||||||||||||||| | | || ||||||||||| || ||||||
Sbjct 1123 TGGAGAGACCCCACAAGTTGCTC-CTTCAGGAGCTGCTGCTTCTCCTC 1169
Score = 438 bits (237), Expect = 1e-121
Identities = 448/547 (82%), Gaps = 25/547 (5%)
Strand=Plus/Plus
Query 2192 CACACCAAGGTCATGGAATGCCGCCATCCCATGGT-CCACAACGAACTCAATCCGGACCT 2250
|||| |||| |||||| || | || |||||| | ||||| ||||||||||| ||||||
Sbjct 2439 CACAGCAAGTTCATGG--TGTC-CCTTCCCAT-ATACCACAGCGAACTCAATCTGGACCT 2494
Query 2251 GTTAC-TCTGCAAGGG-A-A-CAACAATGTCATGGGAGACATGTTCTCGCAAGCTACGCC 2306
||| | | ||| ||| | | |||||||| | ||||| ||||| || | | || | |
Sbjct 2495 GTTGCGGC-GCACGGGAATAGTAACAATGTTGTTGGAGATATGTTTTCACCATCT-GGAC 2552
Query 2307 CAA-CTCCTT-GACGTCATCATCATCTCATCCAGATCTCACACCTTTAACAGGAGCAATT 2364
|| ||||| || | ||||| ||||||| ||| |||||||||||||||||||||||||
Sbjct 2553 TAAGTTCCTTGGA-GACATCAGCATCTCAACCATCTCTCACACCTTTAACAGGAGCAATT 2611
Query 2365 GAGATTGTTCCTCCGCCTCAGAAAAAGTTTGAGCCAAAATCATCAGTCTGGGCAGACACG 2424
||||||||||||| ||||||||||||||||||||||||| || ||||||| |||||
Sbjct 2612 GAGATTGTTCCTCAAAATCAGAAAAAGTTTGAGCCAAAATCAACAATCTGGGCTGACACA 2671
Query 2425 TTGAGCAGGGGGCTTGTTAACTTTAACATATCTGGATCTAAAACAAATCCATTGGCAGAC 2484
|| ||||| ||||| |||||||| ||||| |||||| | ||||||||||||||||| |||
Sbjct 2672 TTAAGCAGAGGGCTGGTTAACTTCAACATTTCTGGACCGAAAACAAATCCATTGGCGGAC 2731
Query 2485 ATAGGAGTTGACTTCGAGGCGATCAACAGGAGAGAGAAACGGCTGGAGAAACAAACAAAC 2544
|||||||||||||||||||| |||||||||| |||||||||||| || |||| ||| | |
Sbjct 2732 ATAGGAGTTGACTTCGAGGCAATCAACAGGAAAGAGAAACGGCTAGAAAAACCAACTACC 2791
Query 2545 ACAC--CA-GCAACATCGACTATCAATATGGGTAAAGCCATGGGATCAGGCACTGGCTTA 2601
||| || | |||||| |||||||| |||||||||||||||||||| || |||||||||
Sbjct 2792 GCACAACAAGTAACATCAACTATCAACATGGGTAAAGCCATGGGATCTGGTACTGGCTTA 2851
Query 2602 GGGCGTTCTGGTGCAACTGCTATGAGACCTCCACCTAATCCAATGACAGGCTCTGGCATG 2661
|| || |||||||| |||||||||||||||| | ||| ||||| |||||| |||||
Sbjct 2852 GGCCGCGCTGGTGCAGGTGCTATGAGACCTCCAACAAATTCAATGGTAGGCTCAAGCATG 2911
Query 2662 CCCATGGGCGGAGGAATGGGTGTTGGTAGCTACGGAGGTATGAACCAGA-ACCAACCCAT 2720
|||| |||| | ||||| | | ||| |||| |||||||||||||| | ||||||||||
Sbjct 2912 CCCACGGGC--ATGAATG--T-T-GGTGGCTATGGAGGTATGAACCA-ACACCAACCCAT 2964
Query 2721 GGGTATG 2727
||| |||
Sbjct 2965 GGGCATG 2971
Score = 379 bits (205), Expect = 6e-104
Identities = 721/954 (76%), Gaps = 99/954 (10%)
Strand=Plus/Plus
Query 1235 CCCCACAAGTTGCTGCTCCA-GAG--GCTGCTTCTCCTCCAACTGGAACCAACA-C--AG 1288
|||||||||||||| || || ||| ||||||||||||| ||| || || || | |
Sbjct 1131 CCCCACAAGTTGCTCCTTCAGGAGCTGCTGCTTCTCCTCTTGCTGAAAACAGCAGCGTGG 1190
Query 1289 CCAATACAA-CTGCT-ACTTTTGTTAATGAATCACCTTCTCAGAAAGTTGAGACTTTCGA 1346
||| | || ||||| | ||||||||||||||||||| ||||| |||||||| |||| ||
Sbjct 1191 ACAACA-AAGCTGCTGA-TTTTGTTAATGAATCACCTCCTCAGCAAGTTGAGGCTTTTGA 1248
Query 1347 TGAATTTGATCCACGCA-GTGC-GTTT--TCAGC-TG-GC-CCTCCAGCAT-ATGCATCT 1398
||||||||||||||| | || | |||| |||| || || ||| |||| | ||| | |
Sbjct 1249 TGAATTTGATCCACG-AGGTTCAGTTTCAGCAGCATGTGCACCTACAGC-TGGTGC-T-T 1304
Query 1399 ACAGATGGTGTTA-C-AGCTCCTCCAACTGTGACTTCTATGTCTG--CC-CCTACCACCT 1453
| | | || | | | | || ||||| ||| ||||| | ||| || ||| | ||
Sbjct 1305 -CGGCTCCTG-CACCTATC-CCACCAACAGTGGTTTCTACGCCTGTTCCGCCT-GC-CC- 1358
Query 1454 CAAACAGTGTTGAGATGGACTTGCTTGGTTCCCTTGCAGACGTATTTTCATCAAA-CGCA 1512
||| | || || ||||| |||||||| || ||| |||| ||||||||| |||| | |
Sbjct 1359 CAATTAATGCCGAAATGGATTTGCTTGGCTCTCTTTCAGATGTATTTTCACCAAATC-CC 1417
Query 1513 TTGGCCATTGTACCAGCTGATTCTATC-TATGTTGAAACCAATGGACAAGCAAACGCTGG 1571
||||| |||||| || ||||||||| | | ||||||||||||||||||||||||||||||
Sbjct 1418 TTGGCTATTGTAACATCTGATTCTA-CTTCTGTTGAAACCAATGGACAAGCAAACGCTGG 1476
Query 1572 TCCAGCTCCATCGTTTTCTACATCTCAGCCATCAACTCAGTCATTTGATGACCCATTTGG 1631
||||||||||||||||||||| |||||| |||| |||||| | |||||||| ||||||||
Sbjct 1477 TCCAGCTCCATCGTTTTCTACTTCTCAGTCATCTACTCAGCCTTTTGATGATCCATTTGG 1536
Query 1632 TGACTCTCCTTTCAAGGCCTTCACTTCTACTGACACCGACTCAACCCCA-CAGCAGAATT 1690
||||||||||||||| ||| |||||||| ||||||| ||| ||| || | || |||| ||
Sbjct 1537 TGACTCTCCTTTCAAAGCCATCACTTCTGCTGACACTGACCCAAGCC-ATCATCAGAGTT 1595
Query 1691 TTGGAGCTTC-TTTCCAGCCACCACCTCCAGCCTTCACTTCAGAGGTCTCACATCCTGAT 1749
|||||| ||| ||| |||||| |||| ||| |||||| | | ||||||
Sbjct 1596 TTGGAG-TTCCTTTTCAGCCAACACCACCA------ACTTCA-A------A--TCCTGAC 1639
Query 1750 ACTGCTCATAACTTTGGCTTTGGGGACTCATTTTCCGCCGTTGCCAATCCTGATCCTG-C 1808
| || ||||| ||||| |||||||| ||||||| || ||| ||| | |||| |||| |
Sbjct 1640 AATGAACATAATTTTGGTTTTGGGGAAGCATTTTCAGCTGTTCCCAGTTCTGAACCTGGC 1699
Query 1809 TTCTCAGAATGTGCAACCTCCATCGAACTCACCAGGT-TTTCCTCAAGAGCAATTTGCTA 1867
| |||| | | | |||| |||||||| | | | |||||||||||||| || | ||
Sbjct 1700 T-CTCA-A--G--C----TCCACCGAACTCATCTG-TCTTTCCTCAAGAGCAGTTCGATA 1748
Query 1868 CATCTCAGAGTGGTATTGATATCCTCGCTGGCATTCTCCCACCATCTGGACCTCCAGT-- 1925
|||| ||||| | || ||||| || || ||||||||||||||||||||||| |||||
Sbjct 1749 CATCGCAGAGCGAAATCGATATTCTTGCCGGCATTCTCCCACCATCTGGACCGCCAGTTT 1808
Query 1926 ----------ACAATCGGGTCCCTCAATACCAACATCTCAATTTCCTCCCAGTGGAAACA 1975
|||| | | | || | || |||||||| ||||||||||||| ||| |||
Sbjct 1809 CTCTGTCTCCACAACCAGATTCCACTATGCCAACATCCCAATTTCCTCCCAATGGTAACT 1868
Query 1976 AC-ATGTACGAGGGATTTCATTC-TCAGCC-GCCGGTATCTACAGCTCCAAACCTGCCTG 2032
| ||| | || || ||| | |||| | || | |||||| || |||| |||| |
Sbjct 1869 CCTATGAA--AGCTAT--CAT-CATCAGGCAGC-GC---CTACAGATCTAAACATGCCAG 1919
Query 2033 GACAAACTCCATTTGGACAAGCTGTT-CAACCATATAACATGGTT-CCTCATTCTCAAAA 2090
||||||| || ||||| |||||| | |||| ||||||||||||| || ||||| |||||
Sbjct 1920 GACAAACACCGTTTGGTCAAGCT-TCACAACAATATAACATGGTTTCC-CATTCGCAAAA 1977
Query 2091 T-ATGACTGGAGCCATGCCATTTAATAGTGGAGGCTTCATGCACCAGCCGGGCT 2143
| || | || || |||| ||| || | ||| ||||||| ||| ||||| ||||
Sbjct 1978 TCATCA-TGAAGGTATGCAATTCAACAATGGGGGCTTCACGCAACAGCCTGGCT 2030
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 126503372652
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5