BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G43180.1
Length=1717
Score E
Sequences producing significant alignments: (Bits) Value
Ahg935213 jgi|Araly1|935213|scaffold_403201.1 2148 0.0
Ahg944745 jgi|Araly1|944745|scaffold_700974.1 481 9e-135
Ahg483418 jgi|Araly1|483418|fgenesh2_kg.4__2478__AT2G43160.3 228 1e-58
Ahg906983 jgi|Araly1|906983|Al_scaffold_0002_64 224 2e-57
> Ahg935213 jgi|Araly1|935213|scaffold_403201.1
Length=1477
Score = 2148 bits (1163), Expect = 0.0
Identities = 1366/1466 (93%), Gaps = 5/1466 (0%)
Strand=Plus/Plus
Query 51 CTTCAATGGCGGCACTTAGCTTTTGCAGCTCTTCTCCTCCTCGAATTCTTCATAAACAAT 110
||||||||||||| || ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 16 CTTCAATGGCGGCGCTAAGCTTTTGCAGCTCTTCTCCTCCTCGAATTCTTCACAAACAAT 75
Query 111 CCAAATCGAG-TTTTTTCCCTTCTTCTGCCTCTTCTTCTTTCACACAAACCGTCGGAGAA 169
|||| ||||| |||||| | |||||| ||||||||||||| |||||||||||||||||
Sbjct 76 CCAACTCGAGCTTTTTT--C--CTTCTGACTCTTCTTCTTTCGCACAAACCGTCGGAGAA 131
Query 170 TTATTTGCGAACCCCTTCTCTGTCTCAAGACGATTTCGTGGCGCCGTTAACTCCACCGTA 229
| || |||||| ||| |||||||||| |||||||||| || |||||| |||||||||| |
Sbjct 132 TCATCTGCGAAACCCATCTCTGTCTCGAGACGATTTCATGTCGCCGTAAACTCCACCGCA 191
Query 230 GTTTCCGATGAATCGGGAAACGCGAAACTTCCATCTTCTCCGGCGAAGAAGCTAAGGAAT 289
||||||||||||||||||||||| ||||| | ||||||||||||||||||||||||| |
Sbjct 192 GTTTCCGATGAATCGGGAAACGCAAAACTACTATCTTCTCCGGCGAAGAAGCTAAGGGAG 251
Query 290 ATTATGCAATCCCCTGGTGTTCTTCAGGGTCCATGTTGCTTCGATGCTCTTAGTGCCAAA 349
||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 252 ATTATACAATCCCCTGGTTTTCTTCAGGGTCCATGTTGCTTCGATGCTCTTAGTGCCAAA 311
Query 350 CTCATCGAACGAGCTGGGTTTCCTTACTGTATCACCTCTGGGTTCTCGATTTCAGCGTCT 409
||||||||||||||||||||||| |||||| ||||| |||||||||| ||||||||| ||
Sbjct 312 CTCATCGAACGAGCTGGGTTTCCGTACTGTGTCACCACTGGGTTCTCAATTTCAGCGGCT 371
Query 410 CGGCTTGGTTTACCGGATAAGGGTCTAATTTCTTATGGAGAAATGGTTGATCAAGGTCAA 469
|||||||||||||| ||||| || || || ||||| ||||||||| ||||||||||||||
Sbjct 372 CGGCTTGGTTTACCTGATAAAGGACTTATATCTTACGGAGAAATGTTTGATCAAGGTCAA 431
Query 470 CAAATTACTCAATCTGTATCAATTCCGGTGATTGGAGACGGTGGCAATGGATACGGTAAT 529
|||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||
Sbjct 432 CAAATTACTCAATCTGTATCTGTTCCGGTGATTGGAGACGGTGGCAATGGATTCGGTAAT 491
Query 530 GCCATGAATGTTAAGAGAACCGTCAAAGGATATATTAAAGCTGGCTTTGCAGGAATTATC 589
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 492 GCCATGAATGTTAAGAGGACCGTCAAAGGATATATTAAAGCTGGCTTTGCAGGAATTATC 551
Query 590 ATCAATGATGAAGTTTGTTGTGAAAATACTAAGAGTGAGAGAAGAGTGGTTTCTAGAGAG 649
|| |||||| | ||||||||||| ||||||||||||||||||||||||||||||| |||
Sbjct 552 ATTAATGATCAGGTTTGTTGTGACGATACTAAGAGTGAGAGAAGAGTGGTTTCTAGGGAG 611
Query 650 GAAGCAGTGATGCGTGTTAAAGCTGCGGTTGATGCACGTAGAGAGTGTGATTCGGACATT 709
||||||||||||||| ||||||||||||||||||| ||||||||||||| ||| ||||||
Sbjct 612 GAAGCAGTGATGCGTATTAAAGCTGCGGTTGATGCGCGTAGAGAGTGTGGTTCCGACATT 671
Query 710 GTAATTGTAGCTCAAACTGATTCCCGTGAAGCGATATCTCTGGAGGAATCACTCATTAGG 769
|| ||||||||||||||||||||||| ||||||||||||||||||||||| ||| |||||
Sbjct 672 GTCATTGTAGCTCAAACTGATTCCCGAGAAGCGATATCTCTGGAGGAATCGCTCGTTAGG 731
Query 770 GCAAGAGCTTTTACAGATGCTGGAGCTGATGTTCTCTCCGTTGATTCTCTTGTTTCTAGA 829
|||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||
Sbjct 732 GCAAGAGCTTTTACAGATGCTGGAGCAGATGTTCTCTCCGTTGATTCTCTTATTTCTAGA 791
Query 830 GAAGAGATGAAAGCATTCTGCAATGTCTATCCACTAGTTCCTAAATTGGCTAATATGCTT 889
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 792 CAAGAGATGAAATCATTCTGCAATGTCTATCCACTAGTTCCTAAATTGGCTAATATGCTG 851
Query 890 GAAAGCGGAGGAAAAATTCCAATTCTAAACCCGCTGGAGCTAGAAGAGATTGGATATAAG 949
||||| ||||| ||| |||| || ||||||||||| ||||||||||||||||||||||||
Sbjct 852 GAAAGTGGAGGGAAATTTCCGATACTAAACCCGCTTGAGCTAGAAGAGATTGGATATAAG 911
Query 950 CTAGTGGCGTATCCAATTTCATTGATTGGAGTATCTATTCAAGCAATGCAGGACGCTCTA 1009
|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| ||
Sbjct 912 CTAGTGGCATATCCAATTTCATTGATTGGAGTATCTATTCAGGCAATGCAGGACGCTTTA 971
Query 1010 TTGGCAATCAAGGGTGGGCGAATTCCTCCACCAGGAAGCATGGCGTCTTTAGAAGAAATT 1069
|||||||| |||||||| |||||||||||||||||||||||||| ||| ||||||||||
Sbjct 972 TTGGCAATTAAGGGTGGTCGAATTCCTCCACCAGGAAGCATGGCATCTGTAGAAGAAATC 1031
Query 1070 GGAGAGATTCTTGGTTTTGACACTTACGAGGAAGAAGAGAAGCGGTACGCTACCTCGTCA 1129
||||||||||||||||||||| ||| |||| |||||||||||| | |||||||| |||
Sbjct 1032 AAAGAGATTCTTGGTTTTGACACATACCAGGAGGAAGAGAAGCGGAATGCTACCTCCTCA 1091
Query 1130 TCAGATAGAGAAGTGAGCAGCAGTAGCGTCTATCGTAATCAACGGGTGGCTAAAGATGAT 1189
|||||||||||| ||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 1092 TCAGATAGAGAAACGAGCAGCAGTAGCGTCTATGGTAATCAACGGGTGGCTCAAGATGAT 1151
Query 1190 CCAGAACAGAGAGAGGACCTGATTGTTGAAGTCATAACACCTGAGGTTTATAATGAACCA 1249
||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct 1152 CCAGAACAGAGAGAGGACCCGATAGTTGAAGTCATAACACCTGAGGTTTATAATGAACCA 1211
Query 1250 AGAAACCCCTTTTCGCGGATCTGGTCACGATCTTTGAGGATCAAAATCATCGGACGCGAT 1309
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1212 AGAAACCCCTTTTCGCGGATCTGGTCACGATCCTTGAGGATCAAAATCATCGGACGCGAC 1271
Query 1310 GGGTTTGAGAAACTCGATGTCAGAATTCCGGCCGGATTCTTGGAAGGTGTCACAAACATT 1369
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1272 GGGTTTGAGAAACTCGATGTCAGAATTCCGGCCGGATTCTTGGAAGGTGTCACAAACATT 1331
Query 1370 GTTCCAGCTTTAGGAGGCGTGAACTTGAAGCAATTGATGGACGATGCAGCAGATGAGGTC 1429
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1332 GTTCCAGCTTTAGGAGGCGTGAACTTGAAGCAATTGATGGACGATGCAGCCGATGAGGTT 1391
Query 1430 GGAGGGAAAATTTTGTTAGATTTTAAAGACACTGCAGGTGACAGAATCCAAGTCTTTCTA 1489
||||||||| ||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 1392 GGAGGGAAACTTTTGTTAGATTTTAAAGACACTGCTGGTGACAGAATCCAAGTTTTTCTA 1451
Query 1490 GAATGACACACACCTAGTGAAGAAAA 1515
|||||||||||| |||| |||||||
Sbjct 1452 GAATGACACACATGTAGTTAAGAAAA 1477
> Ahg944745 jgi|Araly1|944745|scaffold_700974.1
Length=1051
Score = 481 bits (260), Expect = 9e-135
Identities = 314/340 (92%), Gaps = 3/340 (1%)
Strand=Plus/Plus
Query 458 GATCAAGGTCAACAAATTACTCAATCTGTATCAATTCCGGTGATTGGAGACGGTGGCAAT 517
||| || |||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 121 GATTAA-GTCAACAAATAACTCAATCTGTATCAATTCCGGTGATCGGAGACGGTGGCAAT 179
Query 518 GGATACGGTAATGCCATGAATGTTAAGAGAACCGTCAAAGGATATATTAAAGCTGGCTTT 577
|| || |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 GGGTATGGTAATGCTATGAATGTTAAGAGAACCGTCAAAGGATATATTAAAGCTGGCTTC 239
Query 578 GCAGGAATTATCATCAATGATGAAGTTTGTTGTGAAAATACTAAGAGTGAGAGAAGAGTG 637
||||||||||||||||||||| | |||||||||||| |||| |||||||||| |||||||
Sbjct 240 GCAGGAATTATCATCAATGATCAGGTTTGTTGTGAAGATACGAAGAGTGAGATAAGAGTG 299
Query 638 GTTTCTAGAGAGGAAGC-AGTGATGCGTGTTAAAGCTGCGGTTGATGCACGTAGAGAGTG 696
| |||||| |||||| | |||||||| | ||||||||||||||||||| |||||||||||
Sbjct 300 GCTTCTAGGGAGGAA-CTAGTGATGCATATTAAAGCTGCGGTTGATGCGCGTAGAGAGTG 358
Query 697 TGATTCGGACATTGTAATTGTAGCTCAAACTGATTCCCGTGAAGCGATATCTCTGGAGGA 756
|| ||| |||||| | ||||||| ||||||||||||||| ||||||||||||||||||||
Sbjct 359 TGGTTCCGACATTTTCATTGTAGATCAAACTGATTCCCGAGAAGCGATATCTCTGGAGGA 418
Query 757 ATCACTCATTAGGGCAAGAGCTTTTACAGATGCTGGAGCT 796
||||||||||||||||||||||||||||||||||||||||
Sbjct 419 ATCACTCATTAGGGCAAGAGCTTTTACAGATGCTGGAGCT 458
Score = 322 bits (174), Expect = 6e-87
Identities = 214/234 (91%), Gaps = 0/234 (0%)
Strand=Plus/Plus
Query 878 GCTAATATGCTTGAAAGCGGAGGAAAAATTCCAATTCTAAACCCGCTGGAGCTAGAAGAG 937
||||||||||| ||||| ||||| ||| |||| || ||||||||||| ||||||||||||
Sbjct 456 GCTAATATGCTAGAAAGTGGAGGGAAAGTTCCGATACTAAACCCGCTTGAGCTAGAAGAG 515
Query 938 ATTGGATATAAGCTAGTGGCGTATCCAATTTCATTGATTGGAGTATCTATTCAAGCAATG 997
|||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 516 ATTGCATATAAGCTAGTGGCGTATCCAATTTCATTGATTGGAGTATCTATTCAGGCAATG 575
Query 998 CAGGACGCTCTATTGGCAATCAAGGGTGGGCGAATTCCTCCACCAGGAAGCATGGCGTCT 1057
|||||||||||||||||||| |||||||| ||||||||| ||||||||||||||||||||
Sbjct 576 CAGGACGCTCTATTGGCAATTAAGGGTGGTCGAATTCCTTCACCAGGAAGCATGGCGTCT 635
Query 1058 TTAGAAGAAATTGGAGAGATTCTTGGTTTTGACACTTACGAGGAAGAAGAGAAG 1111
|| |||||||| | |||||||||||||||||| || ||| ||| |||||||||
Sbjct 636 TTTGAAGAAATCGAAGAGATTCTTGGTTTTGAGACATACCTGGAGGAAGAGAAG 689
Score = 296 bits (160), Expect = 3e-79
Identities = 202/220 (92%), Gaps = 12/220 (5%)
Strand=Plus/Plus
Query 1149 GCAGTAGCGTCTATCGTAATCAACGGGTGGCTA-AAGATGATCCAGAACAGAGAGAGGAC 1207
|||||||||||| | |||||||||||||||| | ||||||||||||||||||||||||||
Sbjct 691 GCAGTAGCGTCTGTGGTAATCAACGGGTGGC-ACAAGATGATCCAGAACAGAGAGAGGAC 749
Query 1208 CTGATTGTTGAAGTCATAACACCTGAGGTTTATAATGAACCAAGAAACCCCTTTTCGCGG 1267
| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 750 CCGATTGTTGAAGTCATAACACCTGAGGTTTATGATGAACCAAGAAACCCCTTTTCGCGG 809
Query 1268 ATCTGGTCACGATCTTTGAGGATCAAAATCATCGGACGCGATGGGTTTGAGAAACTCGAT 1327
|||||||||||||||||||||||||||||||| || | | || |||||||| |||
Sbjct 810 ATCTGGTCACGATCTTTGAGGATCAAAATCAT-GG--G---T---TT-GAGAAACTTGAT 859
Query 1328 GTCAGAATTCCGGCCGGATTCTTGGAAGGTGTCACAAACA 1367
||||||||||||||||||||||||||||||||||| ||||
Sbjct 860 GTCAGAATTCCGGCCGGATTCTTGGAAGGTGTCACCAACA 899
> Ahg483418 jgi|Araly1|483418|fgenesh2_kg.4__2478__AT2G43160.3
Length=3234
Score = 228 bits (123), Expect = 1e-58
Identities = 143/152 (94%), Gaps = 4/152 (3%)
Strand=Plus/Minus
Query 1566 TTTTATTTGTTCCGTGAATGAGAAATGTATTACACATCTTCAAAATAAAGAAATAGAAGT 1625
|||||||||||||||| |||| |||||| |||||||||||||||||||||||| ||||||
Sbjct 3234 TTTTATTTGTTCCGTGGATGAAAAATGTTTTACACATCTTCAAAATAAAGAAACAGAAGT 3175
Query 1626 GAATGTGTATATATCAAATTATATGCATATAACaaaaaaaGGGCAGACCCGAGCAAGGTT 1685
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 3174 AAATGTGTATATATCAAATTATATGCATATAACAAAAA--GGGCAGACCCGAGCAAGGTT 3117
Query 1686 TGCCACTCTCACACTGGTACAAATTTCACAAC 1717
|||||||||||| | |||||||||||||||||
Sbjct 3116 TGCCACTCTCAC-C-GGTACAAATTTCACAAC 3087
> Ahg906983 jgi|Araly1|906983|Al_scaffold_0002_64
Length=546
Score = 224 bits (121), Expect = 2e-57
Identities = 140/149 (94%), Gaps = 1/149 (1%)
Strand=Plus/Plus
Query 1138 AGAAGTGAGCAGCAGTAGCGTCTATCGTAATCAACGGGTGGCTAAAGATGATCCAGAACA 1197
||||| ||||||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 399 AGAAGCGAGCAGCAGTAGCGTCTATGGTAATCAACGGGTGGCTCAAGATGATCCAGAACA 458
Query 1198 GAGAGAGGACCTGATTGTTGAAGTCATAACACCTGAGGTTTATAATGAACCAAGAAACCC 1257
|||||| |||| |||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 459 GAGAGATGACCCGATTGTTGAAGTCATAACACCTGAGGTTTACAATGAACCAAGAAACCC 518
Query 1258 CTTTTCGCGGATCTGGTCACGATCTTTGA 1286
|||| | ||||||||||||||||| ||||
Sbjct 519 CTTT-CACGGATCTGGTCACGATCATTGA 546
Score = 147 bits (79), Expect = 4e-34
Identities = 97/106 (92%), Gaps = 0/106 (0%)
Strand=Plus/Minus
Query 877 GGCTAATATGCTTGAAAGCGGAGGAAAAATTCCAATTCTAAACCCGCTGGAGCTAGAAGA 936
|||||||||||| |||| ||||| ||| |||| || ||||||||||| |||||||||||
Sbjct 267 GGCTAATATGCTAGAAAATGGAGGGAAAGTTCCTATCCTAAACCCGCTTGAGCTAGAAGA 208
Query 937 GATTGGATATAAGCTAGTGGCGTATCCAATTTCATTGATTGGAGTA 982
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct 207 TATTGGATATAAGCTAGTGGCGTATCCAATTTCATTGATTGGAGTA 162
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64410604295
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5