BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G43190.1
Length=1198
Score E
Sequences producing significant alignments: (Bits) Value
Ahg935214 jgi|Araly1|935214|scaffold_403202.1 1539 0.0
> Ahg935214 jgi|Araly1|935214|scaffold_403202.1
Length=930
Score = 1539 bits (833), Expect = 0.0
Identities = 902/935 (96%), Gaps = 6/935 (1%)
Strand=Plus/Plus
Query 79 GTTAGTTGCTATCTAGCTGCAATGGGTACAGAGACGGTTGTGCATGATCAGGCAAGATGG 138
||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||
Sbjct 1 GTTAGTTGCTATCTAGCTGCAATGGGTACCCAGACGGTTGTGCATGATCAGGCTAGATGG 60
Query 139 GCAATGGCTGCAATGGAACGAAGGCTTGCTGTTGCAAAAGCTCAGCTTCTTCAACAACAA 198
||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||
Sbjct 61 GCAATGGCTGCAATGGAACGAAGGCTTGCTGTTGCGAAAGCTCAGCTTCTT---CAACAA 117
Query 199 CAACAGAAGAATGAGAAAGATAAGAAGGGGACTTCTGATGTAGATGTCTCTATGAAAGAA 258
|||||||||| ||||||||| |||||||| |||||||||||||||||||||| |||||||
Sbjct 118 CAACAGAAGAGTGAGAAAGACAAGAAGGGAACTTCTGATGTAGATGTCTCTACGAAAGAA 177
Query 259 TCTCATCAAGCTGATTCACTGCCTACTCCCTCAAAGACATCAATTAAAAAAGTAGATCCC 318
|| ||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 178 TCACATCAAGCTGATTCACTGCCTACTCCCTCAAAGACGTCGATTAAAAAAGTAGATCCC 237
Query 319 AAGGATGATGATTCTGTTGCATATACAAAG-TTGTCCCATCCCGTTGATGAGAATCTGCT 377
|||||||||||||||||||||||||| ||| |||||||||||||||||||||||| ||||
Sbjct 238 AAGGATGATGATTCTGTTGCATATAC-AAGATTGTCCCATCCCGTTGATGAGAATTTGCT 296
Query 378 GGCAACCAATGTTAAGTTTTCTAGTGCAAAGGGAACTATAGTAGACAAGGTTTTGCATAA 437
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 GGCAACCAATGTTAAGTTTTCTAGTGCAAAGGGAACTATAGTAGACAAGGTTTTGCATAA 356
Query 438 CCTTCTTCGAAGCGGTGACTCTGCTCAAAAGTACTTGCAAGGTACTAAAAGTGTGAAGCT 497
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 357 CCTTCTTCGAAGCGGTGACTCTGCTCAAAAGTACTTGCAAGGTACTAAAAGTGTGAAGCT 416
Query 498 GGATAACTATATCCTTCTTGATAATTTTGTACAGTCACGGTCTTCGGCCTCTGGTTCTAA 557
||| ||||||||||| |||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 417 GGACAACTATATCCTCCTTGATAACTTTGTACAGTCACGGTCTTCAGCCTCTGGTTCTAA 476
Query 558 AAAGGCATCACAGAAGGATTCAAAACGTTCTAAAAGCCGTATGTCTATGAAGCGACTCAA 617
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 477 AAAGGCATCACAGAAGGATTCAAAACGTTCTAGAAGCCGTATGTCTATGAAGCGACTCAA 536
Query 618 GAAATCTGGTGCTTTGCATATCCCTAAAGATCTCCAAAAGTTTGATTTGTTTAAGCCAAT 677
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 537 GAAATCTGGTGCTTTGCATATGCCTAAAGATCTCCAAAAGTTTGATTTGTTTAAGCCAAT 596
Query 678 GCATGGTATGTGGGAAAGTTACATGATGAAACTCATCAAGGTGACCGGGAAGATTCAATT 737
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 597 GCATTGTATGTGGGAAAGTTACATGATGAAACTCATCAAGGTGACCGGGAAGATTCAATT 656
Query 738 ATCTTTAACTCTTCTCTCAGCAGATCTTCATGGTGCTTTCATGTTTGTTGCTGAGTGCAA 797
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 657 ATCTTTAACTCTTCTCTCAGCAGATCTTCACGGTGCTTTCATGTTTGTTGCTGAGTGCAA 716
Query 798 GATAGCATCATTCACTGGTGTACAAGGCATAATGGTGCGCGAGACATCCGAAACATTTGG 857
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 717 GATAGCATCATTCACTGGTGTACAAGGCATAATGGTGCGCGAGACATCCGAAACATTTGG 776
Query 858 AATAATCACACGAGATGACAAATTTCGAGTTGTACCGAAGAAGCTCTCTGTCTTCATCAT 917
|||||||||| |||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 777 AATAATCACAAGAGAAGACAAATTTCGAGTTGTACCCAAGAAGCTCTCTGTCTTCATCAT 836
Query 918 CCAACTCGACTGCTGGAAGATTACTTTACATGGGGACAAGTTTATTTCAAGAGACAATAT 977
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 837 CCAACTCGACTGCTGGAAGATTACATTACATGGGGACAAGTTTATTTCAAGGGACAATAT 896
Query 978 TGTTCAACGTTAATGCTAAAAATGAAGCTCTAGTC 1012
||||||||||| ||||||||| ||||||||| |||
Sbjct 897 TGTTCAACGTTGATGCTAAAA-TGAAGCTCTTGTC 930
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44718181641
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5