BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G43200.1
Length=1836
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483426 jgi|Araly1|483426|fgenesh2_kg.4__2486__AT2G43200.1 2750 0.0
Ahg952426 jgi|Araly1|952426|scaffold_71100001.1 281 1e-74
> Ahg483426 jgi|Araly1|483426|fgenesh2_kg.4__2486__AT2G43200.1
Length=1833
Score = 2750 bits (1489), Expect = 0.0
Identities = 1731/1846 (94%), Gaps = 23/1846 (1%)
Strand=Plus/Plus
Query 1 ATGAATCCATCACAACAACACTTA-CCAAAGCTATGTCCTAAGCGCCTATTCCTCTTCTT 59
|||||||||||||||||||||||| | ||||||||||||||||| |||||| |||||||
Sbjct 1 ATGAATCCATCACAACAACACTTATTC-AAGCTATGTCCTAAGCGTCTATTCTTCTTCTT 59
Query 60 CACTCCATTCTTATTGTTC-TCTCTCTATTACATCCTCACCACTATCAAAACCATCACCA 118
|||||||||| |||| ||| || ||||||||||||||||||||||||||||||||||||
Sbjct 60 CACTCCATTCCTATTCTTCTTC-CTCTATTACATCCTCACCACTATCAAAACCATCACCT 118
Query 119 TCTCTTCCCAAGATCGTCACCATCCTCCACAGCTTCATGTACCTTCCATTTCCCATTACT 178
|||||||||||| || |||||||||||||||| |||| ||||| |||||||||||||||
Sbjct 119 TCTCTTCCCAAGTTCCTCACCATCCTCCACAGATTCAGGTACCCTCCATTTCCCATTACG 178
Query 179 ACTCCCTTCCAGAAACTTCAGAAAACCGATCGTCACCACCTCCACTACTACTACCA-CCA 237
||||||||||||||||||| |||||| |||| ||||||| ||| | | || || ||
Sbjct 179 CCTCCCTTCCAGAAACTTCAAAAAACCAATCGCCACCACCACCA-T-C--CT--CATCC- 231
Query 238 CCACCATCATCCTCATCATCGTTATCTTCTTACTTTCCACTCTGTCCCAAGAACTTCACC 297
|| ||||||| |||||||| | | | |||||||||||||||||||||||||||||||||
Sbjct 232 TCATCATCATCATCATCATCATCACCATCTTACTTTCCACTCTGTCCCAAGAACTTCACC 291
Query 298 AACTACTTGCCTTGCCACGATCCATCAACAGCACGACAGTACAGCATTGAGAGACACTAT 357
||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 292 AACTACTTGCCATGCCACGATCCATCAACAGCACGACAGTACAGCATTCAGAGACACTAT 351
Query 358 CGGAGAGAGAGGCACTGTCCTGACATAGCCCAAGAGAAGTTCAGGTGTTTGGTCCCAAAG 417
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 352 CGGAGAGAGAGACACTGTCCTGACATAGCCCAAGAGAAGTTCAGGTGTTTGGTCCCAAAG 411
Query 418 CCCACTGGCTACAAAACGCCTTTTCCATGGCCTGAGAGTAGAAAATATGCTTGGTTTAGG 477
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 412 CCCACTGGCTTCAAAACGCCTTTTCCATGGCCTGAGAGTAGAAAATATGCTTGGTTCAAG 471
Query 478 AACGTACCATTCAAGAGGCTAGCTGAGTTGAAAAAGACTCAGAATTGGGTTAGACTTGAA 537
|||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct 472 AACGTACCATTCAAGAGGCTAGCTGAGTTGAAAAAGACTCAGAATTGGATTAGGCTTGAA 531
Query 538 GGAGACCGTTTTGTTTTCCCAGGAGGCGGGACTT-CTTTCCCCGGTGGTGTGAAGGACTA 596
|||||||||||||||||||| ||||||||||||| |||| ||||||||||||||||||||
Sbjct 532 GGAGACCGTTTTGTTTTCCCTGGAGGCGGGACTTCCTTT-CCCGGTGGTGTGAAGGACTA 590
Query 597 TGTTGATGTGATTCTGAGTGTTTTGCCTTTGGCTTCTGGGAGTATCAGGACTGTTCTCGA 656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 591 TGTTGATGTGATTCTGAGTGTTTTGCCTTTGGCTTCTGGGAGTATCAGGACTGTTCTCGA 650
Query 657 TATTGGATGTGGAGTAGCGAGTTTTGGAGCCTTTTTGCTGAACTATAAGATTTTGACAAT 716
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 651 TATTGGATGTGGAGTAGCGAGTTTTGGAGCCTTTTTGCTGAACTATAACATTTTGACAAT 710
Query 717 GTCCATTGCACCGAGGGATATACATGAGGCTCAAGTTCAGTTCGCATTAGAACGTGGACT 776
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 711 GTCCATTGCACCGAGGGATATACACGAGGCTCAAGTTCAGTTCGCATTAGAACGTGGACT 770
Query 777 CCCTGCTATGCTCGGTGTTTTAAGCACTTATAAGCTGCCTTACCCGTCGAGGTCTTTTGA 836
||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| ||
Sbjct 771 CCCTGCTATGCTCGGTGTTCTAAGCACTTATAAGTTGCCTTACCCGTCGAGGTCTTTCGA 830
Query 837 CATGGTCCATTGTTCTAGATGCCTTGTCAATTGGACTTCCTATGATGGGCTTTACTTGAT 896
||||||||| |||||||||||||| |||||||||||| ||||||||||||||||||||||
Sbjct 831 CATGGTCCACTGTTCTAGATGCCTGGTCAATTGGACTGCCTATGATGGGCTTTACTTGAT 890
Query 897 GGAGGTGGATCGTGTTTTACGTCCTGAGGGATACTGGGTGTTGTCTGGACCCCCTGTAGC 956
|||||||||||||||| |||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 891 GGAGGTGGATCGTGTTCTACGTCCTGATGGATACTGGGTGTTGTCTGGACCACCTGTAGC 950
Query 957 ATCAAGGGTTAAATTTAAGAACCAGAAGAGAGATTCCAAGGAGTTGCAGAACCAGATGGA 1016
|||||| ||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 951 ATCAAGTGTTAAATCCAAGAACCAGAAGAGAGATTCCAAGGAATTGCAGAACCAGATGGA 1010
Query 1017 GAAACTAAATGATGTTTTTAGAAGACTTTGTTGGGAGAAGATTGCTGAAAGTTACCCGGT 1076
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1011 GCAACTAAATGATGTTTTTAGAAGACTTTGTTGGGAGAAGATTGCTGAAAGTTACCCAGT 1070
Query 1077 TGTCATCTGGAGAAAGCCTTCTAATCATTTGCAGTGTAGGA-AAAGACTAAAAGCTCTTA 1135
||||||||||||||||||||||||||||||||||||||| | |||||||| |||||||||
Sbjct 1071 TGTCATCTGGAGAAAGCCTTCTAATCATTTGCAGTGTAG-ACAAAGACTACAAGCTCTTA 1129
Query 1136 AGTTTCCTGGATTATGCTCTTCTAGTGACCCTGACGCTGCGTGGTATAAAGAGATGGAGC 1195
||||||||||||| |||||||||||||||| ||| |||||||||| |||||||||||||
Sbjct 1130 AGTTTCCTGGATTCTGCTCTTCTAGTGACCTTGAATCTGCGTGGTACAAAGAGATGGAGC 1189
Query 1196 CGTGCATCACTCCTCTTCCAGATGTTAACGACACAAACAAGACCGTTCTCAAAAACTGGC 1255
|||| |||||||||||||||||||||||||||||| |||||| |||||||| ||||||||
Sbjct 1190 CGTGTATCACTCCTCTTCCAGATGTTAACGACACACACAAGATCGTTCTCAGAAACTGGC 1249
Query 1256 CTGAGAGACTAAACCATGTGCCTCGA--A-TGAAAACCGGGTCGATACAGGGAACAACTA 1312
||||||||||||| ||||||||||| | | |||||||||| |||| ||||||||||||
Sbjct 1250 CTGAGAGACTAAATAATGTGCCTCGACGAATCAAAACCGGGTTGATAAAGGGAACAACTA 1309
Query 1313 TTGCCGGCTTCAAAGCTGACACGAACCTGTGGCAAAGAAGAGTTTTGTACTATGACACCA 1372
||||| |||||||| || ||| ||| |||||||||||||||| ||||||||||||||||
Sbjct 1310 TTGCCAGCTTCAAATCTAACAATAACATGTGGCAAAGAAGAGTATTGTACTATGACACCA 1369
Query 1373 AGTTTAAGTTTCTCAGCAATGGAAAATACAGAAACGTCATTGATATGAACGCAGGATTAG 1432
|||| |||||||||||||||||||||||||||||| |||||||||||||||| |||||||
Sbjct 1370 AGTTAAAGTTTCTCAGCAATGGAAAATACAGAAACATCATTGATATGAACGCTGGATTAG 1429
Query 1433 GTGGTTTTGCTGCAGCTTTGATCAAATATC-CAATGTGGGTTATGAATGTGGTTCCATTT 1491
||||||||||||||||||||| |||||| | ||||||||||||||||||||||||| |||
Sbjct 1430 GTGGTTTTGCTGCAGCTTTGAACAAATA-CACAATGTGGGTTATGAATGTGGTTCCGTTT 1488
Query 1492 GATCTTAAACCGAACACACTCGGTGTTGTGTATGATCGCGGTCTCATTGGAACTTACATG 1551
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1489 GATCTTAAACCGAACACACTCGGTGTTGTGTATGATCGCGGTCTCATTGGAACTTACATG 1548
Query 1552 AACTGGTGTGAAGCTTTATCTACATACCCTCGAACCTATGACCTGATTCATGCCAATGGT 1611
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1549 AACTGGTGTGAAGCTTTCTCTACATACCCTCGAACCTATGATCTGATTCATGCCAATGGT 1608
Query 1612 GTATTCAGTTTGTACTTGGACAAATGTGACATTGTTGATATACTCTTGGAGATGCAGAGG 1671
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1609 GTGTTCAGTTTGTACTTGGACAAATGTGACATTGTTGATATACTCTTGGAGATGCAGAGG 1668
Query 1672 ATTCTTAGACCAGAAGGAGCAGTTATAATACGAGACCGTTTTGATGTTCTTGTCAAAGTG 1731
||||||||||||||||| ||||||||||||||||||||||| ||||||||| ||||||||
Sbjct 1669 ATTCTTAGACCAGAAGGCGCAGTTATAATACGAGACCGTTTAGATGTTCTTATCAAAGTG 1728
Query 1732 AAAGCCATAACCAATCAAATGAGATGGAATGGGACAATGTATCCAGAAGATAATAGTG-T 1790
||||| ||||||| |||||||||||||||||||||| | |||||||| ||||| |||| |
Sbjct 1729 AAAGCTATAACCAGTCAAATGAGATGGAATGGGACAGTTTATCCAGACGATAACAGTGGT 1788
Query 1791 TTTCGATCATGGAACAATACTAATCGTAGATAACTCAATTAAATAA 1836
||| |||||||||||||||||||| |||||||| ||| ||||||||
Sbjct 1789 TTT-GATCATGGAACAATACTAATTGTAGATAATTCAGTTAAATAA 1833
> Ahg952426 jgi|Araly1|952426|scaffold_71100001.1
Length=215
Score = 281 bits (152), Expect = 1e-74
Identities = 181/195 (93%), Gaps = 2/195 (1%)
Strand=Plus/Plus
Query 1643 TTGTTGATATACTCTTGGAGATGCAGAGGATTCTTAGACCAGAAGGAGCAGTTATAATAC 1702
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1 TTGTTGATATACTCTTGGAGATGCAGAGGATTCTTAGACCAGAAGGCGCAGTTATAATAC 60
Query 1703 GAGACCGTTTTGATGTTCTTGTCAAAGTGAAAGCCATAACCAATCAAATGAGATGGAATG 1762
|||||||||| ||||||||| ||||||||||||| ||||||| |||||||||||||||||
Sbjct 61 GAGACCGTTTAGATGTTCTTATCAAAGTGAAAGCTATAACCAGTCAAATGAGATGGAATG 120
Query 1763 GGACAATGTATCCAGAAGATAATAGTG-TTTTCGATCATGGAACAATACTAATCGTAGAT 1821
||||| | |||||||| ||||| |||| |||| |||||||||||||||||||| ||||||
Sbjct 121 GGACAGTTTATCCAGACGATAACAGTGGTTTT-GATCATGGAACAATACTAATTGTAGAT 179
Query 1822 AACTCAATTAAATAA 1836
|| ||| ||||||||
Sbjct 180 AATTCAGTTAAATAA 194
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68943343450
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5