BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G43210.1
Length=1854
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483427 jgi|Araly1|483427|fgenesh2_kg.4__2487__AT2G43210.2 2545 0.0
Ahg497521 jgi|Araly1|497521|fgenesh2_kg.711__1__AT2G43210.2 2516 0.0
> Ahg483427 jgi|Araly1|483427|fgenesh2_kg.4__2487__AT2G43210.2
Length=1763
Score = 2545 bits (1378), Expect = 0.0
Identities = 1648/1776 (93%), Gaps = 28/1776 (2%)
Strand=Plus/Plus
Query 1 GGTGGCGTTAAGTCGTTAA-CTGCGTCTGATCTACTCGTAGCTTCTTCGTTCTTCAGCAT 59
||||||||| ||||||||| | ||||||||||||| || ||||||||||||||| ||||
Sbjct 12 GGTGGCGTTTAGTCGTTAATCGGCGTCTGATCTACCCGAAGCTTCTTCGTTCTTGAGCAG 71
Query 60 TTGATCGGAGTAGTGACCTTTTTGATTGACAGATGGAAGCTCTGTCTTCTCTTACGTTCA 119
|||||| | | | | | | ||||||||||||||||||||||||||||
Sbjct 72 TTGATC-G-G-A-T---C--------T-----ATGGAAGCTCTGTCTTCTCTTACGTTCA 111
Query 120 AGGGTTCTCTTCCAGAAGCCATATTTGAAGCCAAAGGGAAGAAGAAGCTTTTTGTTGTCT 179
|||||||| |||| |||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 112 AGGGTTCTGTTCCGGAAGCCATATTTGAAGCCAAAGGGCAGAAGAAGCTTTTTGTTGTCT 171
Query 180 ACATTTCTGGAGAGGATGAAGAGTCGGATAAGTTGAACAGATTGACTTGGACTGATGCAT 239
|||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 172 ACATCTCTGGAGAGGATGAAGAGTCAGATAAGTTGAACAGATTGACTTGGACTGATGCAT 231
Query 240 CGGTGGCAGATTCGTTGTCGAAGTATTGTATTTTAGTGCATATCCAAGCTGGAAGTGTTG 299
|||||||||| ||| |||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 232 CGGTGGCAGAGTCGCTGTCGAAGTATTGTATTTTAGTGCATATTCAAGCTGGAAGTGTTG 291
Query 300 ACGCCACAAACTTCTCTGCAATATACCCATATTCATCTGTTCCTTGTATAGCTGCCATTG 359
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 292 ACGCCACAAACTTCTCCGCAATATACCCATATTCATCTGTTCCTTGTATAGCTGCCATTG 351
Query 360 GATTCAGTGGTACACAAGTTTGGAGAACCGAAGGATTTATCACTGCTGAAGACCTTGCAT 419
|||||||||||||||||||||||| || |||||||||||| ||||||||||| ||||||
Sbjct 352 GATTCAGTGGTACACAAGTTTGGAAAAATGAAGGATTTATCGCTGCTGAAGACATTGCAT 411
Query 420 CCAGTTTAGAGAAAGCGTGGTTAGGACTTCATATCCAGGAAACAACTGCAAGTATCTTTT 479
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 412 CCAGTTTAGAGAAGGCGTGGTTAGGACTTCATATCCAGGAAACAACTGCAAGTATCTTTT 471
Query 480 CAGCAGCACTTGCATCACAGAACTCAGAGACACCTGTTTCTAGTGCTTCGAGTGTTGTCT 539
|||||||||||||||||||||||||||||| ||||| |||||||||||| | ||||||||
Sbjct 472 CAGCAGCACTTGCATCACAGAACTCAGAGAAACCTGCTTCTAGTGCTTCAAATGTTGTCT 531
Query 540 TGCCTCCCGGAAGTGTTCCTTTAGATGCAGCGGTTGCATCTCCATCGACGGCTTCTAGTG 599
||||| | | ||||| ||||||||||||| |||||||||||||||||||||| |||||||
Sbjct 532 TGCCTTCTGAAAGTGGTCCTTTAGATGCACCGGTTGCATCTCCATCGACGGCCTCTAGTG 591
Query 600 TTCAACCCTCAGAGACAAAGTCAACGGTAACATCTGCATCAACAACAGAAAACAATGATG 659
|||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct 592 TTCAACCCTCAGAGACAAAGTCAACGGTGACATCTGCATCAACAAAAGAAAACAATGATG 651
Query 660 GCACAGTTGCAGTTAAGGGCAAAGAATCTGCTGAACCCAGTAATTTGTGTGATACTACTA 719
||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 652 GCACAGTTGCAGTTAAGGGCAAAGAATCTGCCGAACCTAGTAATTTGTGTGATACTACTA 711
Query 720 AAAACCAGCCAGCACCCTCTGTTGATGGAACTAAGGCCAATGTTGAACATGAAGCGACAG 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 712 AAAACCAGCCAGCACCCTCTGTTGATGGAACTAAGGCCAATGTTGAACATGAAGCGACAG 771
Query 780 AGACCCCTTTGCGTGTTCAGGCAGAAAAGGAGCCAATTCGTCCTACAGCCCCAGGAACAA 839
| |||||| || ||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 772 GGGCCCCTTCGCATGTTCAGGCAGAAAAGGAGCCAATTCGTCCTGCAGCCCCAGGAACAA 831
Query 840 ATGATAATACATCCAGGGTTCGATCTTCTGTTGATAGAAAAAGGAAACAGGGAACTGTGA 899
|||||||| ||||||| |||||||||||||||||||| ||||||||| | ||||||||||
Sbjct 832 ATGATAATGCATCCAGCGTTCGATCTTCTGTTGATAGTAAAAGGAAAAAAGGAACTGTGA 891
Query 900 TAAATGAAGAGGATAGTGGTGTAGGTGTTAGTGGAAGGGACATTAATCTAACAAAATCTG 959
|||| |||| ||||||||| |||||||||||| ||||||||||||| ||||||||||||
Sbjct 892 TAAACAAAGATGATAGTGGTCTAGGTGTTAGTGAAAGGGACATTAATTTAACAAAATCTG 951
Query 960 TCGATACAAAAGAGACCATGAAGCCAAAGGATGAAGGAGGAGAGGAAGAGGATGGAGAAA 1019
| | |||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 952 TTGGTACAGAAGAGGTCATGAAGCCAAAGGATGAAGGAGGAGAGGAAGAGGTTGGAGAAA 1011
Query 1020 AATCCAAAAAAG-CATCTGACGTTCATTTAAACATTCGATTACCTGATGGTAGTAGCCTT 1078
||||| |||||| ||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 1012 AATCC-AAAAAGTCATCTGATGTTCATTTAAACATTCGATTGCCTGATGGTAGTAGCCTT 1070
Query 1079 CAGGAGAAGTTTTCTGTGACAAGTATATTGAGAATGGTCAAGGATTATGTGAACAGTAAT 1138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1071 CAGGAGAAGTTTTCTGTGACAAGTATATTGAGAATGGTCAAGGATTATGTGAACAGTAAT 1130
Query 1139 CAAACAATCGGACTGGGTGCTTATGATCTTGCGGTTCCTTACCCACGTAAGGTGTATACT 1198
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1131 CAAACAATCGGACTGGGTGCTTATGATCTTGCGGTTCCTTACCCACGTAAGGTGTATAGT 1190
Query 1199 GACCAAGATCTGGATAAGTCTCTATCCGAGTTGAGATTGTTCGATAGACAAGCACTTGTA 1258
||||||||| |||||||||||||||| |||||| | ||||| ||||||||||||||||||
Sbjct 1191 GACCAAGATATGGATAAGTCTCTATCGGAGTTGGGTTTGTTTGATAGACAAGCACTTGTA 1250
Query 1259 GTAGTTCCGCGAAAAAGAGCAACCGTCTATCAAAGAGGAACATCTTACTCGGAGTCTAAC 1318
|| |||| ||| ||||||||||||||||||||||||||| |||||||||| |||||||||
Sbjct 1251 GTGGTTCTGCGTAAAAGAGCAACCGTCTATCAAAGAGGACCATCTTACTCTGAGTCTAAC 1310
Query 1319 AACAACACAGACCCTAAT-AGTGGCGGTTACTTTGCTTATGTTAGAAGAGTACTGTCTTA 1377
|||||||||||||||||| | ||| |||||||||||||||||||||||||||||||||||
Sbjct 1311 AACAACACAGACCCTAATGA-TGGTGGTTACTTTGCTTATGTTAGAAGAGTACTGTCTTA 1369
Query 1378 TGCAAACCCGTTTTCATATTTTGGCGGTGGTACTGCCAACGCATCAAGCTCTGTTCCAGA 1437
||||||||||||||||||||||||||| |||||||||||| |||||||||||| ||||||
Sbjct 1370 TGCAAACCCGTTTTCATATTTTGGCGGCGGTACTGCCAACACATCAAGCTCTGGTCCAGA 1429
Query 1438 ACGTCAAACAAGACCAAATACGGAGGTGAGAAACAATCTGGGGCAAGTAGGGA-CGTCCT 1496
| ||||| ||||| | ||||| ||||||||||||||||||||| ||| | ||||
Sbjct 1430 GCCTCAAAGTGGACCACAGGCGGAGCTGAGAAACAATCTGGGGCAAGG-GGGCTCCTCCT 1488
Query 1497 TTCAAGATCCATCAGAAGGTAGGAGCAACGTTAGGAATAGGAGACCAACCACTTCTCGGA 1556
|||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1489 TTCAAGATTCATCAGAAGGTAGGAGCAATGTTAGGAATAGGAGACCAACCACTTCTCGGA 1548
Query 1557 TTGGAAGTAACATCCATACGTTGAATCACAATGAAGATGAGGCTCCGTTTGGTGATGGAA 1616
|||||||||||||||||||| ||||||| | ||||||||| |||||||||||||||||||
Sbjct 1549 TTGGAAGTAACATCCATACGCTGAATCATACTGAAGATGACGCTCCGTTTGGTGATGGAA 1608
Query 1617 ACGCTTTTTGGAACGGAAACTCCACACAGTACGGTGGTGGAAGCGGTGGAGACAGTAATG 1676
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1609 ACGCCTTTTGGAACGGAAACTCCACACAGTACGGTGGTGGAAGCGGTGGAGACAGTAATG 1668
Query 1677 ATAGACGATGAAATAAGAGAAGTTGAAATCTGTGTGGATAGATACAGAAACAGCTCGGGT 1736
|||| ||||||||| |||||| |||||||||||||||||||||||||||||||||| |
Sbjct 1669 ATAGGCGATGAAATGAGAGAACTTGAAATCTGTGTGGATAGATACAGAAACAGCTCTGA- 1727
Query 1737 GTTTACTTTTTATACTTGACTCTTTATGAACCATTT 1772
|||||||| |||||||| ||||||||||||||||||
Sbjct 1728 GTTTACTTGTTATACTTTACTCTTTATGAACCATTT 1763
> Ahg497521 jgi|Araly1|497521|fgenesh2_kg.711__1__AT2G43210.2
Length=1724
Score = 2516 bits (1362), Expect = 0.0
Identities = 1616/1736 (93%), Gaps = 27/1736 (2%)
Strand=Plus/Plus
Query 1 GGTGGCGTTAAGTCGTTAA-CTGCGTCTGATCTACTCGTAGCTTCTTCGTTCTTCAGCAT 59
||||||||| ||||||||| | ||||||||||||| || ||||||||||||||| ||||
Sbjct 12 GGTGGCGTTTAGTCGTTAATCGGCGTCTGATCTACCCGAAGCTTCTTCGTTCTTGAGCAG 71
Query 60 TTGATCGGAGTAGTGACCTTTTTGATTGACAGATGGAAGCTCTGTCTTCTCTTACGTTCA 119
|||||| | | | | | | ||||||||||||||||||||||||||||
Sbjct 72 TTGATC-G-G-A-T---C--------T-----ATGGAAGCTCTGTCTTCTCTTACGTTCA 111
Query 120 AGGGTTCTCTTCCAGAAGCCATATTTGAAGCCAAAGGGAAGAAGAAGCTTTTTGTTGTCT 179
|||||||| |||| |||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 112 AGGGTTCTGTTCCGGAAGCCATATTTGAAGCCAAAGGGCAGAAGAAGCTTTTTGTTGTCT 171
Query 180 ACATTTCTGGAGAGGATGAAGAGTCGGATAAGTTGAACAGATTGACTTGGACTGATGCAT 239
|||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 172 ACATCTCTGGAGAGGATGAAGAGTCAGATAAGTTGAACAGATTGACTTGGACTGATGCAT 231
Query 240 CGGTGGCAGATTCGTTGTCGAAGTATTGTATTTTAGTGCATATCCAAGCTGGAAGTGTTG 299
|||||||||| ||| |||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 232 CGGTGGCAGAGTCGCTGTCGAAGTATTGTATTTTAGTGCATATTCAAGCTGGAAGTGTTG 291
Query 300 ACGCCACAAACTTCTCTGCAATATACCCATATTCATCTGTTCCTTGTATAGCTGCCATTG 359
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 292 ACGCCACAAACTTCTCCGCAATATACCCATATTCATCTGTTCCTTGTATAGCTGCCATTG 351
Query 360 GATTCAGTGGTACACAAGTTTGGAGAACCGAAGGATTTATCACTGCTGAAGACCTTGCAT 419
|||||||||||||||||||||||| || |||||||||||| ||||||||||| ||||||
Sbjct 352 GATTCAGTGGTACACAAGTTTGGAAAAATGAAGGATTTATCGCTGCTGAAGACATTGCAT 411
Query 420 CCAGTTTAGAGAAAGCGTGGTTAGGACTTCATATCCAGGAAACAACTGCAAGTATCTTTT 479
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 412 CCAGTTTAGAGAAGGCGTGGTTAGGACTTCATATCCAGGAAACAACTGCAAGTATCTTTT 471
Query 480 CAGCAGCACTTGCATCACAGAACTCAGAGACACCTGTTTCTAGTGCTTCGAGTGTTGTCT 539
|||||||||||||||||||||||||||||| ||||| |||||||||||| | ||||||||
Sbjct 472 CAGCAGCACTTGCATCACAGAACTCAGAGAAACCTGCTTCTAGTGCTTCAAATGTTGTCT 531
Query 540 TGCCTCCCGGAAGTGTTCCTTTAGATGCAGCGGTTGCATCTCCATCGACGGCTTCTAGTG 599
||||| | | ||||| ||||||||||||| |||||||||||||||||||||| |||||||
Sbjct 532 TGCCTTCTGAAAGTGGTCCTTTAGATGCACCGGTTGCATCTCCATCGACGGCCTCTAGTG 591
Query 600 TTCAACCCTCAGAGACAAAGTCAACGGTAACATCTGCATCAACAACAGAAAACAATGATG 659
|||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct 592 TTCAACCCTCAGAGACAAAGTCAACGGTGACATCTGCATCAACAAAAGAAAACAATGATG 651
Query 660 GCACAGTTGCAGTTAAGGGCAAAGAATCTGCTGAACCCAGTAATTTGTGTGATACTACTA 719
||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 652 GCACAGTTGCAGTTAAGGGCAAAGAATCTGCCGAACCTAGTAATTTGTGTGATACTACTA 711
Query 720 AAAACCAGCCAGCACCCTCTGTTGATGGAACTAAGGCCAATGTTGAACATGAAGCGACAG 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 712 AAAACCAGCCAGCACCCTCTGTTGATGGAACTAAGGCCAATGTTGAACATGAAGCGACAG 771
Query 780 AGACCCCTTTGCGTGTTCAGGCAGAAAAGGAGCCAATTCGTCCTACAGCCCCAGGAACAA 839
| |||||| || ||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 772 GGGCCCCTTCGCATGTTCAGGCAGAAAAGGAGCCAATTCGTCCTGCAGCCCCAGGAACAA 831
Query 840 ATGATAATACATCCAGGGTTCGATCTTCTGTTGATAGAAAAAGGAAACAGGGAACTGTGA 899
|||||||| ||||||| |||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 832 ATGATAATGCATCCAGCGTTCGATCTTCTGTTGATAGTAAAAGGAAACAAGGAACTGTGA 891
Query 900 TAAATGAAGAGGATAGTGGTGTAGGTGTTAGTGGAAGGGACATTAATCTAACAAAATCTG 959
|||| |||| ||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 892 TAAACAAAGATGATAGTGGTCTAGGTGTTAGTGGAAGGGACATTAATTTAACAAAATCTG 951
Query 960 TCGATACAAAAGAGACCATGAAGCCAAAGGATGAAGGAGGAGAGGAAGAGGATGGAGAAA 1019
| | |||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 952 TTGGTACAGAAGAGGTCATGAAGCCAAAGGATGAAGGAGGAGAGGAAGAGGTTGGAGAAA 1011
Query 1020 AATCCAAAAAAG-CATCTGACGTTCATTTAAACATTCGATTACCTGATGGTAGTAGCCTT 1078
||||| |||||| ||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 1012 AATCC-AAAAAGTCATCTGATGTTCATTTAAACATTCGATTGCCTGATGGTAGTAGCCTT 1070
Query 1079 CAGGAGAAGTTTTCTGTGACAAGTATATTGAGAATGGTCAAGGATTATGTGAACAGTAAT 1138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1071 CAGGAGAAGTTTTCTGTGACAAGTATATTGAGAATGGTCAAGGATTATGTGAACAGTAAT 1130
Query 1139 CAAACAATCGGACTGGGTGCTTATGATCTTGCGGTTCCTTACCCACGTAAGGTGTATACT 1198
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1131 CAAACAATCGGACTGGGTGCTTATGATCTTGCGGTTCCTTACCCACGTAAGGTGTATAGT 1190
Query 1199 GACCAAGATCTGGATAAGTCTCTATCCGAGTTGAGATTGTTCGATAGACAAGCACTTGTA 1258
||||||||| |||||||||||||||| |||||| | ||||| ||||||||||||||||||
Sbjct 1191 GACCAAGATATGGATAAGTCTCTATCGGAGTTGGGTTTGTTTGATAGACAAGCACTTGTA 1250
Query 1259 GTAGTTCCGCGAAAAAGAGCAACCGTCTATCAAAGAGGAACATCTTACTCGGAGTCTAAC 1318
|| |||| ||| ||||||||||||||||||||||||||| |||||||||| |||||||||
Sbjct 1251 GTGGTTCTGCGTAAAAGAGCAACCGTCTATCAAAGAGGACCATCTTACTCTGAGTCTAAC 1310
Query 1319 AACAACACAGACCCTAAT-AGTGGCGGTTACTTTGCTTATGTTAGAAGAGTACTGTCTTA 1377
|||||||||||||||||| | ||| |||||||||||||||||||||||||||||||||||
Sbjct 1311 AACAACACAGACCCTAATGA-TGGTGGTTACTTTGCTTATGTTAGAAGAGTACTGTCTTA 1369
Query 1378 TGCAAACCCGTTTTCATATTTTGGCGGTGGTACTGCCAACGCATCAAGCTCTGTTCCAGA 1437
||||||||||||||||||||||||||| |||||||||||| |||||||||||| ||||||
Sbjct 1370 TGCAAACCCGTTTTCATATTTTGGCGGCGGTACTGCCAACACATCAAGCTCTGGTCCAGA 1429
Query 1438 ACGTCAAACAAGACCAAATACGGAGGTGAGAAACAATCTGGGGCAAGTAGGGA-CGTCCT 1496
| ||||| ||||| | ||||| ||||||||||||||||||||| ||| | ||||
Sbjct 1430 GCCTCAAAGTGGACCACAGGCGGAGCTGAGAAACAATCTGGGGCAAGG-GGGCTCCTCCT 1488
Query 1497 TTCAAGATCCATCAGAAGGTAGGAGCAACGTTAGGAATAGGAGACCAACCACTTCTCGGA 1556
|||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1489 TTCAAGATTCATCAGAAGGTAGGAGCAATGTTAGGAATAGGAGACCAACCACTTCTCGGA 1548
Query 1557 TTGGAAGTAACATCCATACGTTGAATCACAATGAAGATGAGGCTCCGTTTGGTGATGGAA 1616
|||||||||||||||||||| ||||||| | ||||||||| |||||||||||||||||||
Sbjct 1549 TTGGAAGTAACATCCATACGCTGAATCATACTGAAGATGACGCTCCGTTTGGTGATGGAA 1608
Query 1617 ACGCTTTTTGGAACGGAAACTCCACACAGTACGGTGGTGGAAGCGGTGGAGACAGTAATG 1676
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1609 ACGCCTTTTGGAACGGAAACTCCACACAGTACGGTGGTGGAAGCGGTGGAGACAGTAATG 1668
Query 1677 ATAGACGATGAAATAAGAGAAGTTGAAATCTGTGTGGATAGATACAGAAACAGCTC 1732
|||||||||||||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct 1669 ATAGACGATGAAATGAGAGAACTTGAAATCTGTGTGGATAGATACAGAAACAGCTC 1724
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69628967860
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5