BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G43230.2 Length=1736 Score E Sequences producing significant alignments: (Bits) Value Ahg483429 jgi|Araly1|483429|fgenesh2_kg.4__2489__AT2G43230.1 2132 0.0 Ahg486400 jgi|Araly1|486400|fgenesh2_kg.5__2392__AT3G59350.1 1146 0.0 > Ahg483429 jgi|Araly1|483429|fgenesh2_kg.4__2489__AT2G43230.1 Length=1563 Score = 2132 bits (1154), Expect = 0.0 Identities = 1296/1365 (95%), Gaps = 8/1365 (1%) Strand=Plus/Plus Query 359 GGCGAATGATCGTACACAAAGCAACTTTGTTCGATTGGATAAACCGAGAGCTGTAGACGA 418 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 204 GGCGAATGATCGTACACAAAGCAACTTTGTTCGATTGGATAAACCGAGAGCTGTAGACGA 263 Query 419 TCTTGATATAGGCAAGAGAGGGAAGATGCGTAGGTGGTTGTGCTGTTCTTGTCGTGTACA 478 | |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 264 TATTGACATAGGCAAGAGAGGGAAGATGCGTAGGTGGTTGTGCTGTTCTTGTCGTGTACA 323 Query 479 AGAATCTTACCCATCAGCTGAAAATAACCGATTGAAAACCCCTCCTACTCGCCATTACGA 538 ||||||||||||| |||||||| ||||||| ||||||||||||||||||||||||||||| Sbjct 324 AGAATCTTACCCAACAGCTGAACATAACCGCTTGAAAACCCCTCCTACTCGCCATTACGA 383 Query 539 CTATGGACGTAACAACAAGAAAACACCAGCTCCTGTGAAGCCTCCTGTTTTGAAGGAGCC 598 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 384 CTATGGACGTAACAACAAGAAAACACCAGCTCCTGTGAAGCCTCCTGTCTTGAAGGAGCC 443 Query 599 TCCGCCTATTGATGTCCCCGCAATGTCATTGGTTGAGCTCAAAGAAAAGACTCAGAATTT 658 ||| || || || ||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 444 TCCTCCCATCGACGTCCCTGCAATGTCATTGGTTGAGCTCAAAGAAAAGACTCAGAATTT 503 Query 659 TGGATCAAAGGCATTGATTGGAGAAGGATCCTATGGAAGAGTGTACTACGCAAACTTTAA 718 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 504 TGGATCAAAGGCATTGATTGGAGAAGGATCCTATGGAAGAGTGTACTATGCAAACTTTAA 563 Query 719 TGATGGGAAGGCCGTGGCTGTGAAAAAGCTTGATAATGCATCTGAACCCGAAACAAATGT 778 |||||| ||||||||||||||||||||||| |||||| |||||||||| ||||||||||| Sbjct 564 TGATGGAAAGGCCGTGGCTGTGAAAAAGCTCGATAATTCATCTGAACCTGAAACAAATGT 623 Query 779 CGAGTTCTTGACTCAGGTCTCTAAAGTTTCGAGGCTGAAAAGTGACAATTTTGTTCAGCT 838 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 624 CGAGTTCTTGACTCAGGTCTCGAAAGTTTCGAGGCTGAAAAGTGACAATTTTGTTCAGCT 683 Query 839 TCTTGGTTATTGTGTAGAAGGGAACCTTCGTGTCCTTGCTTATGAGTTTGCCACAATGAG 898 ||||||||||||||||||||| ||||||||||||||||| ||||||||||| || ||| | Sbjct 684 TCTTGGTTATTGTGTAGAAGGAAACCTTCGTGTCCTTGCATATGAGTTTGCTACTATGGG 743 Query 899 ATCATTGCACGACATCTTACACGGGAGAAAGGGAGTGCAAGGAGCACAACCTGGTCCAAC 958 ||| || || |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 744 ATCTTTACATGACATCTTACACGGGAGAAAGGGAGTGCAAGGAGCACAACCTGGTCCAAC 803 Query 959 ACTTGAGTGGATGCAACGAGTCCGAGTTGCGGTTGATGCAGCTAAAGGATTAGAATACTT 1018 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 804 ACTTGAGTGGATGCAACGAGTCCGAGTTGCGGTTGATGCAGCTAAAGGACTAGAATACTT 863 Query 1019 ACACGAGAAAGTTCAACCTGCGGTTATACACAGAGATATTCGATCTAGCAATGTGCTTAT 1078 |||||||||||| |||||| ||||||||||||||||||| |||||||||||||||||||| Sbjct 864 ACACGAGAAAGTACAACCTCCGGTTATACACAGAGATATCCGATCTAGCAATGTGCTTAT 923 Query 1079 TTTCGAAGATTTCAAAGCCAAGATTGCTGACTTTAATCTTTCCAATCAAGCTCCTGATAT 1138 |||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| Sbjct 924 TTTCGAAGATTTCAAAGCCAAGATTGCTGATTTTAATCTTTCTAATCAAGCTCCTGATAT 983 Query 1139 GGCTGCTCGTCTTCATTCCACTAGAGTTTTGGGGACCTTCGGTTATCATGCACCAGAATA 1198 |||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| Sbjct 984 GGCTGCTCGTCTTCATTCCACTAGAGTTTTGGGGACATTCGGTTATCACGCACCAGAATA 1043 Query 1199 TGCGATGACAGGACAGTTGACACAGAAGAGTGATGTTTACAGTTTTGGAGTTGTGCTTTT 1258 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1044 TGCGATGACAGGACAGTTGACACAGAAGAGTGATGTTTACAGTTTTGGAGTTGTGCTTTT 1103 Query 1259 GGAACTTCTTACCGGGAGAAAACCGGTTGATCATACTATGCCTCGTGGTCAACAGAGTCT 1318 ||| ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| Sbjct 1104 GGAGCTTCTTACCGGGAGAAAACCGGTAGATCATACGATGCCTCGTGGTCAACAGAGTCT 1163 Query 1319 TGTCACTTGGGCTACTCCAAGGCTGAGTGAAGACAAAGTGAAACAATGTGTTGATCCAAA 1378 |||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| Sbjct 1164 TGTCACTTGGGCTACTCCAAGGCTGAGTGAAGACAAAGTGAAGCAATGTGTAGATCCAAA 1223 Query 1379 ACTCAAAGGAGAGTATCCTCCTAAAGCAGTGGCAAAGCTTGCAGCGGTTGCAGCGTTGTG 1438 ||||||||||||||||||||||||||| || |||||||| || ||||||||||||||||| Sbjct 1224 ACTCAAAGGAGAGTATCCTCCTAAAGCTGTTGCAAAGCTCGCGGCGGTTGCAGCGTTGTG 1283 Query 1439 TGTGCAATACGAAGCAGAGTTTAGGCCAAACATGAGCATTGTAGTAAAAGCTCTTCAACC 1498 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1284 TGTGCAATACGAAGCAGAGTTTAGGCCAAACATGAGCATTGTAGTAAAAGCTCTTCAACC 1343 Query 1499 GCTCTTGAGGTCAGCAACAGCTGCTGCTCCTCCAACACCTCAACCTTGATTCTTCTTTGT 1558 |||||| |||||||||||||||| |||||||||||||| |||| |||||||||||||||| Sbjct 1344 GCTCTTAAGGTCAGCAACAGCTGTTGCTCCTCCAACACATCAAGCTTGATTCTTCTTTGT 1403 Query 1559 GGTTCTTGCTTACTGATTATCAT--GGCTTCAAGGTTTTGTCTTCACTTTATTCTTTCTA 1616 ||||||||| ||||||||||| | |||||||||||||| |||| |||||| ||| |||| Sbjct 1404 GGTTCTTGCATACTGATTATCTTAAGGCTTCAAGGTTTTTTCTTTACTTTAATCTGTCTA 1463 Query 1617 TCTACCATGGAATGTAAATGG-TTATTAAGGGGAGGTGGTGAGGAGCAATTGGGATTTCA 1675 | ||||||||||||||||||| |||| |||| ||| ||||||| |||||||||||||||| Sbjct 1464 TTTACCATGGAATGTAAATGGGTTATCAAGGAGAGATGGTGAGTAGCAATTGGGATTTCA 1523 Query 1676 CTCCATGGAAATGATCTGTGTTAACTGCTTTTTGATGGGTTGATT 1720 ||| ||||||||||| |||| || | |||| |||||||| ||| Sbjct 1524 CTCTATGGAAATGATTTGTGCTA--T--TTTT-GATGGGTTAATT 1563 Score = 303 bits (164), Expect = 2e-81 Identities = 193/206 (94%), Gaps = 5/206 (2%) Strand=Plus/Plus Query 57 gtagttatttgggattccaaatttttttcATTCCTAAATTTCTCCACGAGCTCATCACCT 116 |||||||||||||||||| |||||||||||||||||||| |||||||| |||||||||| Sbjct 1 GTAGTTATTTGGGATTCC-CATTTTTTTCATTCCTAAATTACTCCACGACCTCATCACCT 59 Query 117 CCTTTCGTCTCTGCCTCTCATTTGTCTACAAACATTTTTTCCTTTTGATTCGTCTCTCTG 176 ||||||||| ||||||||||||||||||| | ||||||||| |||||||||||||||||| Sbjct 60 CCTTTCGTCCCTGCCTCTCATTTGTCTACCAGCATTTTTTCTTTTTGATTCGTCTCTCTG 119 Query 177 GTTTATTGCTCGTTGATCGTTTGTTTCTAAATTGCATTCTGATTTCTGAT----GGATCG 232 |||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| Sbjct 120 GTTTATTGCTCGTTGATCGTTTGTTTCTAAATTGCATTTTGATTTCTGATATATGGATCG 179 Query 233 TGATTTTCATCGTCGTGGTCAAGTGG 258 |||||||||||||||||||||||||| Sbjct 180 TGATTTTCATCGTCGTGGTCAAGTGG 205 > Ahg486400 jgi|Araly1|486400|fgenesh2_kg.5__2392__AT3G59350.1 Length=1762 Score = 1146 bits (620), Expect = 0.0 Identities = 1000/1182 (85%), Gaps = 31/1182 (3%) Strand=Plus/Plus Query 359 GGCGAATGATCGTACACAAAGC-AACTTTGTTCGATTGGATAAACCGAGAGCTGTAGACG 417 |||||| |||||| ||| ||| |||||||| || |||||||||||||||| ||||||| Sbjct 280 GGCGAACGATCGTTCAC-CAGCTCACTTTGTTAGACTGGATAAACCGAGAGCCGTAGACG 338 Query 418 ATCT-TGATATAGGCAAGAGAGGGAAGATGCGTAGGTGGTTGTGCTGTTCTTGTCGTGTA 476 |||| | ||||||||||||||| |||||||||||||||||||||||| |||| | || Sbjct 339 ATCTCT-ATATAGGCAAGAGAGAAAAGATGCGTAGGTGGTTGTGCTGTGCTTGCCACGTT 397 Query 477 CAAGAATCTTACCCA-TCAGCTGAAAAT-AACCGA-TTGAAAACCCCTCCTACTCGCCAT 533 ||||| |||| ||| || |||||||| || | | ||| || | |||| | ||| Sbjct 398 GAAGAACCTTA-CCATTCTTCTGAAAATGAA-C-ACCTGAGAA--GC-CCTAAGCACCAC 451 Query 534 TACGACTATGGACGTAACAACAAGAAAA-CACCA-GCTCCTGTGAAGCCTCCTGTTTTGA 591 | || | ||| | | || || |||||| || || || ||||||||||| || ||||| Sbjct 452 AATGATTTTGGGCATCAC-ACTAGAAAACCA-CAGGCAGCTGTGAAGCCTGATGCTTTGA 509 Query 592 AGGAGCCTCCGCCTATTGATGTCCCCGCAATGTCATTGGTTGAGCTCAAAGAAAAGACTC 651 |||||||||| |||||||||| || ||| ||||||||| |||||| |||||||||||| Sbjct 510 AGGAGCCTCCATCTATTGATGTGCCTGCATTGTCATTGGATGAGCTGAAAGAAAAGACTG 569 Query 652 AGAATTTTGGATCAAAGGCATTGATTGGAGAAGGATCCTATGGAAGAGTGTACTACGCAA 711 | |||||||||||||||||||||||||| |||||||| || ||||||| ||||| |||| Sbjct 570 ATAATTTTGGATCAAAGGCATTGATTGGTGAAGGATCTTACGGAAGAGCCTACTATGCAA 629 Query 712 ACTTTAATGATGGGAAGGCCGTGGCTGTGAAAAAGCTTGATAATGCATCTGAACCCGAAA 771 ||| || || ||||| || ||||| ||||| |||||||||||| || ||||||| ||| Sbjct 630 CCTTGAAAGAAGGGAAAGCTGTGGCGGTGAAGAAGCTTGATAATTCAGCTGAACCTGAAT 689 Query 772 CAAATGTCGAGTTCTTGACTCAGGTCTCTAAAGTTTCGAGGCTGAA-AAGTGACAATTTT 830 ||||||| |||||||||||||||||||| | ||||| | |||||| | || |||||| Sbjct 690 CAAATGTTGAGTTCTTGACTCAGGTCTCGAGGGTTTCCAAGCTGAAGCA-CGATAATTTT 748 Query 831 GTTCAGCTTCTT-GGTTATTGTGTAGAAGGGAACCTT-CGTGTCCTTGCTTATGAGTTTG 888 ||| ||| |||| ||||||||||| |||||||| || || | ||||| |||||||||| Sbjct 749 GTTGAGC-TCTTCGGTTATTGTGTTGAAGGGAA-TTTCCGCATTCTTGCGTATGAGTTTG 806 Query 889 CCACAATGAGATCATTGCACGACATCTTACACGGGA-GAAAGGGAGTGCAAGGAGCACAA 947 |||| ||| |||| || || |||||||||||||||| |||| ||||| |||||||||||| Sbjct 807 CCACTATGGGATCTTTACATGACATCTTACACGGGAGGAAA-GGAGTCCAAGGAGCACAA 865 Query 948 CCTGGTCCAACACTTGAGTGGATGCAACGAGTCCGAGTTGCGGTTGATGCAGCTAAAGGA 1007 || ||||| |||||||| ||||| ||||| ||| || | || ||||||||||||| |||| Sbjct 866 CCAGGTCCGACACTTGATTGGATCCAACGGGTCAGAATAGCAGTTGATGCAGCTAGAGGA 925 Query 1008 TTAGAATACTTACACGAGAAAGTTCAACCTGCGGTTATACACAGAGATATTCGATCTAGC 1067 | || || ||||| |||||||||||||||||||| |||||||||||||||||||||||| Sbjct 926 CTCGAGTATTTACATGAGAAAGTTCAACCTGCGGTAATACACAGAGATATTCGATCTAGC 985 Query 1068 AATGTGCTTAT-TTTCGAAGA-TTTCAAAGCCAAGATTGCTGACTTTAATCTTTCCAATC 1125 ||||||||| | ||| ||||| ||| ||||||||||| ||||| |||||||| || |||| Sbjct 986 AATGTGCTTCTCTTT-GAAGACTTT-AAAGCCAAGATCGCTGATTTTAATCTATCGAATC 1043 Query 1126 AAGCTCCTGATATGGCTGCTCGTCTTCATTCCACTAGAGTTTTGGGGACCTTCGGTTATC 1185 || |||||||||||||||||||||||||||| || ||||||||||| ||||||||||| | Sbjct 1044 AATCTCCTGATATGGCTGCTCGTCTTCATTCTACCAGAGTTTTGGGAACCTTCGGTTACC 1103 Query 1186 ATGCACCAGAATATGCGATGACAGGACAGTTGACACAGAAGAGTGATGTTTACAGTTTTG 1245 |||||||||| ||||| ||||| || || |||||||||||||||||||||| ||||||| Sbjct 1104 ATGCACCAGAGTATGCTATGACTGGTCAACTGACACAGAAGAGTGATGTTTATAGTTTTG 1163 Query 1246 GAGTTGTGCTTTTGGAACTTCTT-ACCGGGAGAAAACCGGTTGATCATACTATGCCTCGT 1304 | || ||||| ||||| || ||| || || || ||||| ||||||||||| ||||||||| Sbjct 1164 GTGTCGTGCTATTGGAGCT-CTTGACTGGTAGGAAACCCGTTGATCATACGATGCCTCGT 1222 Query 1305 GGTCAACAGAGTCTTGTCACTTGGGCTACTCCAAGGCTGAGTGAAGACAAAGTGAAACAA 1364 |||||||| ||||||||||||||||||||||| ||||| ||||||||||||||||| ||| Sbjct 1223 GGTCAACAAAGTCTTGTCACTTGGGCTACTCCGAGGCTAAGTGAAGACAAAGTGAAGCAA 1282 Query 1365 TGTGTTGATCCAAAACTCAAAGGAGAGTATCCTCCTAAAGCAGTGGCAAAGCTTGCAGCG 1424 ||||||||||||||||| |||||||| |||||||||||||| || |||||||| || || Sbjct 1283 TGTGTTGATCCAAAACTGAAAGGAGAATATCCTCCTAAAGCTGTTGCAAAGCTCGCGGCA 1342 Query 1425 GTTGCAGCGTTGTGTGTGCAATACGAAGCAGAGTTTAGGCCAAACATGAGCATTGTAGTA 1484 || |||||||||||||||||||| ||| ||||||||||||| |||||||||||||| ||| Sbjct 1343 GTAGCAGCGTTGTGTGTGCAATATGAATCAGAGTTTAGGCCGAACATGAGCATTGTGGTA 1402 Query 1485 AAAGCTCTTCAACCGCTCTTGAGGTCAGCAACAGCTGCTGCT 1526 |||||||||||||| | ||||||||| ||||||| || ||| Sbjct 1403 AAAGCTCTTCAACCATTGTTGAGGTCATCAACAGCAGCAGCT 1444 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 65134318950 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5