BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G43230.2
Length=1736
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483429 jgi|Araly1|483429|fgenesh2_kg.4__2489__AT2G43230.1 2132 0.0
Ahg486400 jgi|Araly1|486400|fgenesh2_kg.5__2392__AT3G59350.1 1146 0.0
> Ahg483429 jgi|Araly1|483429|fgenesh2_kg.4__2489__AT2G43230.1
Length=1563
Score = 2132 bits (1154), Expect = 0.0
Identities = 1296/1365 (95%), Gaps = 8/1365 (1%)
Strand=Plus/Plus
Query 359 GGCGAATGATCGTACACAAAGCAACTTTGTTCGATTGGATAAACCGAGAGCTGTAGACGA 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 204 GGCGAATGATCGTACACAAAGCAACTTTGTTCGATTGGATAAACCGAGAGCTGTAGACGA 263
Query 419 TCTTGATATAGGCAAGAGAGGGAAGATGCGTAGGTGGTTGTGCTGTTCTTGTCGTGTACA 478
| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 264 TATTGACATAGGCAAGAGAGGGAAGATGCGTAGGTGGTTGTGCTGTTCTTGTCGTGTACA 323
Query 479 AGAATCTTACCCATCAGCTGAAAATAACCGATTGAAAACCCCTCCTACTCGCCATTACGA 538
||||||||||||| |||||||| ||||||| |||||||||||||||||||||||||||||
Sbjct 324 AGAATCTTACCCAACAGCTGAACATAACCGCTTGAAAACCCCTCCTACTCGCCATTACGA 383
Query 539 CTATGGACGTAACAACAAGAAAACACCAGCTCCTGTGAAGCCTCCTGTTTTGAAGGAGCC 598
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 384 CTATGGACGTAACAACAAGAAAACACCAGCTCCTGTGAAGCCTCCTGTCTTGAAGGAGCC 443
Query 599 TCCGCCTATTGATGTCCCCGCAATGTCATTGGTTGAGCTCAAAGAAAAGACTCAGAATTT 658
||| || || || ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 444 TCCTCCCATCGACGTCCCTGCAATGTCATTGGTTGAGCTCAAAGAAAAGACTCAGAATTT 503
Query 659 TGGATCAAAGGCATTGATTGGAGAAGGATCCTATGGAAGAGTGTACTACGCAAACTTTAA 718
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 504 TGGATCAAAGGCATTGATTGGAGAAGGATCCTATGGAAGAGTGTACTATGCAAACTTTAA 563
Query 719 TGATGGGAAGGCCGTGGCTGTGAAAAAGCTTGATAATGCATCTGAACCCGAAACAAATGT 778
|||||| ||||||||||||||||||||||| |||||| |||||||||| |||||||||||
Sbjct 564 TGATGGAAAGGCCGTGGCTGTGAAAAAGCTCGATAATTCATCTGAACCTGAAACAAATGT 623
Query 779 CGAGTTCTTGACTCAGGTCTCTAAAGTTTCGAGGCTGAAAAGTGACAATTTTGTTCAGCT 838
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 624 CGAGTTCTTGACTCAGGTCTCGAAAGTTTCGAGGCTGAAAAGTGACAATTTTGTTCAGCT 683
Query 839 TCTTGGTTATTGTGTAGAAGGGAACCTTCGTGTCCTTGCTTATGAGTTTGCCACAATGAG 898
||||||||||||||||||||| ||||||||||||||||| ||||||||||| || ||| |
Sbjct 684 TCTTGGTTATTGTGTAGAAGGAAACCTTCGTGTCCTTGCATATGAGTTTGCTACTATGGG 743
Query 899 ATCATTGCACGACATCTTACACGGGAGAAAGGGAGTGCAAGGAGCACAACCTGGTCCAAC 958
||| || || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 744 ATCTTTACATGACATCTTACACGGGAGAAAGGGAGTGCAAGGAGCACAACCTGGTCCAAC 803
Query 959 ACTTGAGTGGATGCAACGAGTCCGAGTTGCGGTTGATGCAGCTAAAGGATTAGAATACTT 1018
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 804 ACTTGAGTGGATGCAACGAGTCCGAGTTGCGGTTGATGCAGCTAAAGGACTAGAATACTT 863
Query 1019 ACACGAGAAAGTTCAACCTGCGGTTATACACAGAGATATTCGATCTAGCAATGTGCTTAT 1078
|||||||||||| |||||| ||||||||||||||||||| ||||||||||||||||||||
Sbjct 864 ACACGAGAAAGTACAACCTCCGGTTATACACAGAGATATCCGATCTAGCAATGTGCTTAT 923
Query 1079 TTTCGAAGATTTCAAAGCCAAGATTGCTGACTTTAATCTTTCCAATCAAGCTCCTGATAT 1138
|||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 924 TTTCGAAGATTTCAAAGCCAAGATTGCTGATTTTAATCTTTCTAATCAAGCTCCTGATAT 983
Query 1139 GGCTGCTCGTCTTCATTCCACTAGAGTTTTGGGGACCTTCGGTTATCATGCACCAGAATA 1198
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 984 GGCTGCTCGTCTTCATTCCACTAGAGTTTTGGGGACATTCGGTTATCACGCACCAGAATA 1043
Query 1199 TGCGATGACAGGACAGTTGACACAGAAGAGTGATGTTTACAGTTTTGGAGTTGTGCTTTT 1258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1044 TGCGATGACAGGACAGTTGACACAGAAGAGTGATGTTTACAGTTTTGGAGTTGTGCTTTT 1103
Query 1259 GGAACTTCTTACCGGGAGAAAACCGGTTGATCATACTATGCCTCGTGGTCAACAGAGTCT 1318
||| ||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 1104 GGAGCTTCTTACCGGGAGAAAACCGGTAGATCATACGATGCCTCGTGGTCAACAGAGTCT 1163
Query 1319 TGTCACTTGGGCTACTCCAAGGCTGAGTGAAGACAAAGTGAAACAATGTGTTGATCCAAA 1378
|||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 1164 TGTCACTTGGGCTACTCCAAGGCTGAGTGAAGACAAAGTGAAGCAATGTGTAGATCCAAA 1223
Query 1379 ACTCAAAGGAGAGTATCCTCCTAAAGCAGTGGCAAAGCTTGCAGCGGTTGCAGCGTTGTG 1438
||||||||||||||||||||||||||| || |||||||| || |||||||||||||||||
Sbjct 1224 ACTCAAAGGAGAGTATCCTCCTAAAGCTGTTGCAAAGCTCGCGGCGGTTGCAGCGTTGTG 1283
Query 1439 TGTGCAATACGAAGCAGAGTTTAGGCCAAACATGAGCATTGTAGTAAAAGCTCTTCAACC 1498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1284 TGTGCAATACGAAGCAGAGTTTAGGCCAAACATGAGCATTGTAGTAAAAGCTCTTCAACC 1343
Query 1499 GCTCTTGAGGTCAGCAACAGCTGCTGCTCCTCCAACACCTCAACCTTGATTCTTCTTTGT 1558
|||||| |||||||||||||||| |||||||||||||| |||| ||||||||||||||||
Sbjct 1344 GCTCTTAAGGTCAGCAACAGCTGTTGCTCCTCCAACACATCAAGCTTGATTCTTCTTTGT 1403
Query 1559 GGTTCTTGCTTACTGATTATCAT--GGCTTCAAGGTTTTGTCTTCACTTTATTCTTTCTA 1616
||||||||| ||||||||||| | |||||||||||||| |||| |||||| ||| ||||
Sbjct 1404 GGTTCTTGCATACTGATTATCTTAAGGCTTCAAGGTTTTTTCTTTACTTTAATCTGTCTA 1463
Query 1617 TCTACCATGGAATGTAAATGG-TTATTAAGGGGAGGTGGTGAGGAGCAATTGGGATTTCA 1675
| ||||||||||||||||||| |||| |||| ||| ||||||| ||||||||||||||||
Sbjct 1464 TTTACCATGGAATGTAAATGGGTTATCAAGGAGAGATGGTGAGTAGCAATTGGGATTTCA 1523
Query 1676 CTCCATGGAAATGATCTGTGTTAACTGCTTTTTGATGGGTTGATT 1720
||| ||||||||||| |||| || | |||| |||||||| |||
Sbjct 1524 CTCTATGGAAATGATTTGTGCTA--T--TTTT-GATGGGTTAATT 1563
Score = 303 bits (164), Expect = 2e-81
Identities = 193/206 (94%), Gaps = 5/206 (2%)
Strand=Plus/Plus
Query 57 gtagttatttgggattccaaatttttttcATTCCTAAATTTCTCCACGAGCTCATCACCT 116
|||||||||||||||||| |||||||||||||||||||| |||||||| ||||||||||
Sbjct 1 GTAGTTATTTGGGATTCC-CATTTTTTTCATTCCTAAATTACTCCACGACCTCATCACCT 59
Query 117 CCTTTCGTCTCTGCCTCTCATTTGTCTACAAACATTTTTTCCTTTTGATTCGTCTCTCTG 176
||||||||| ||||||||||||||||||| | ||||||||| ||||||||||||||||||
Sbjct 60 CCTTTCGTCCCTGCCTCTCATTTGTCTACCAGCATTTTTTCTTTTTGATTCGTCTCTCTG 119
Query 177 GTTTATTGCTCGTTGATCGTTTGTTTCTAAATTGCATTCTGATTTCTGAT----GGATCG 232
|||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 120 GTTTATTGCTCGTTGATCGTTTGTTTCTAAATTGCATTTTGATTTCTGATATATGGATCG 179
Query 233 TGATTTTCATCGTCGTGGTCAAGTGG 258
||||||||||||||||||||||||||
Sbjct 180 TGATTTTCATCGTCGTGGTCAAGTGG 205
> Ahg486400 jgi|Araly1|486400|fgenesh2_kg.5__2392__AT3G59350.1
Length=1762
Score = 1146 bits (620), Expect = 0.0
Identities = 1000/1182 (85%), Gaps = 31/1182 (3%)
Strand=Plus/Plus
Query 359 GGCGAATGATCGTACACAAAGC-AACTTTGTTCGATTGGATAAACCGAGAGCTGTAGACG 417
|||||| |||||| ||| ||| |||||||| || |||||||||||||||| |||||||
Sbjct 280 GGCGAACGATCGTTCAC-CAGCTCACTTTGTTAGACTGGATAAACCGAGAGCCGTAGACG 338
Query 418 ATCT-TGATATAGGCAAGAGAGGGAAGATGCGTAGGTGGTTGTGCTGTTCTTGTCGTGTA 476
|||| | ||||||||||||||| |||||||||||||||||||||||| |||| | ||
Sbjct 339 ATCTCT-ATATAGGCAAGAGAGAAAAGATGCGTAGGTGGTTGTGCTGTGCTTGCCACGTT 397
Query 477 CAAGAATCTTACCCA-TCAGCTGAAAAT-AACCGA-TTGAAAACCCCTCCTACTCGCCAT 533
||||| |||| ||| || |||||||| || | | ||| || | |||| | |||
Sbjct 398 GAAGAACCTTA-CCATTCTTCTGAAAATGAA-C-ACCTGAGAA--GC-CCTAAGCACCAC 451
Query 534 TACGACTATGGACGTAACAACAAGAAAA-CACCA-GCTCCTGTGAAGCCTCCTGTTTTGA 591
| || | ||| | | || || |||||| || || || ||||||||||| || |||||
Sbjct 452 AATGATTTTGGGCATCAC-ACTAGAAAACCA-CAGGCAGCTGTGAAGCCTGATGCTTTGA 509
Query 592 AGGAGCCTCCGCCTATTGATGTCCCCGCAATGTCATTGGTTGAGCTCAAAGAAAAGACTC 651
|||||||||| |||||||||| || ||| ||||||||| |||||| ||||||||||||
Sbjct 510 AGGAGCCTCCATCTATTGATGTGCCTGCATTGTCATTGGATGAGCTGAAAGAAAAGACTG 569
Query 652 AGAATTTTGGATCAAAGGCATTGATTGGAGAAGGATCCTATGGAAGAGTGTACTACGCAA 711
| |||||||||||||||||||||||||| |||||||| || ||||||| ||||| ||||
Sbjct 570 ATAATTTTGGATCAAAGGCATTGATTGGTGAAGGATCTTACGGAAGAGCCTACTATGCAA 629
Query 712 ACTTTAATGATGGGAAGGCCGTGGCTGTGAAAAAGCTTGATAATGCATCTGAACCCGAAA 771
||| || || ||||| || ||||| ||||| |||||||||||| || ||||||| |||
Sbjct 630 CCTTGAAAGAAGGGAAAGCTGTGGCGGTGAAGAAGCTTGATAATTCAGCTGAACCTGAAT 689
Query 772 CAAATGTCGAGTTCTTGACTCAGGTCTCTAAAGTTTCGAGGCTGAA-AAGTGACAATTTT 830
||||||| |||||||||||||||||||| | ||||| | |||||| | || ||||||
Sbjct 690 CAAATGTTGAGTTCTTGACTCAGGTCTCGAGGGTTTCCAAGCTGAAGCA-CGATAATTTT 748
Query 831 GTTCAGCTTCTT-GGTTATTGTGTAGAAGGGAACCTT-CGTGTCCTTGCTTATGAGTTTG 888
||| ||| |||| ||||||||||| |||||||| || || | ||||| ||||||||||
Sbjct 749 GTTGAGC-TCTTCGGTTATTGTGTTGAAGGGAA-TTTCCGCATTCTTGCGTATGAGTTTG 806
Query 889 CCACAATGAGATCATTGCACGACATCTTACACGGGA-GAAAGGGAGTGCAAGGAGCACAA 947
|||| ||| |||| || || |||||||||||||||| |||| ||||| ||||||||||||
Sbjct 807 CCACTATGGGATCTTTACATGACATCTTACACGGGAGGAAA-GGAGTCCAAGGAGCACAA 865
Query 948 CCTGGTCCAACACTTGAGTGGATGCAACGAGTCCGAGTTGCGGTTGATGCAGCTAAAGGA 1007
|| ||||| |||||||| ||||| ||||| ||| || | || ||||||||||||| ||||
Sbjct 866 CCAGGTCCGACACTTGATTGGATCCAACGGGTCAGAATAGCAGTTGATGCAGCTAGAGGA 925
Query 1008 TTAGAATACTTACACGAGAAAGTTCAACCTGCGGTTATACACAGAGATATTCGATCTAGC 1067
| || || ||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 926 CTCGAGTATTTACATGAGAAAGTTCAACCTGCGGTAATACACAGAGATATTCGATCTAGC 985
Query 1068 AATGTGCTTAT-TTTCGAAGA-TTTCAAAGCCAAGATTGCTGACTTTAATCTTTCCAATC 1125
||||||||| | ||| ||||| ||| ||||||||||| ||||| |||||||| || ||||
Sbjct 986 AATGTGCTTCTCTTT-GAAGACTTT-AAAGCCAAGATCGCTGATTTTAATCTATCGAATC 1043
Query 1126 AAGCTCCTGATATGGCTGCTCGTCTTCATTCCACTAGAGTTTTGGGGACCTTCGGTTATC 1185
|| |||||||||||||||||||||||||||| || ||||||||||| ||||||||||| |
Sbjct 1044 AATCTCCTGATATGGCTGCTCGTCTTCATTCTACCAGAGTTTTGGGAACCTTCGGTTACC 1103
Query 1186 ATGCACCAGAATATGCGATGACAGGACAGTTGACACAGAAGAGTGATGTTTACAGTTTTG 1245
|||||||||| ||||| ||||| || || |||||||||||||||||||||| |||||||
Sbjct 1104 ATGCACCAGAGTATGCTATGACTGGTCAACTGACACAGAAGAGTGATGTTTATAGTTTTG 1163
Query 1246 GAGTTGTGCTTTTGGAACTTCTT-ACCGGGAGAAAACCGGTTGATCATACTATGCCTCGT 1304
| || ||||| ||||| || ||| || || || ||||| ||||||||||| |||||||||
Sbjct 1164 GTGTCGTGCTATTGGAGCT-CTTGACTGGTAGGAAACCCGTTGATCATACGATGCCTCGT 1222
Query 1305 GGTCAACAGAGTCTTGTCACTTGGGCTACTCCAAGGCTGAGTGAAGACAAAGTGAAACAA 1364
|||||||| ||||||||||||||||||||||| ||||| ||||||||||||||||| |||
Sbjct 1223 GGTCAACAAAGTCTTGTCACTTGGGCTACTCCGAGGCTAAGTGAAGACAAAGTGAAGCAA 1282
Query 1365 TGTGTTGATCCAAAACTCAAAGGAGAGTATCCTCCTAAAGCAGTGGCAAAGCTTGCAGCG 1424
||||||||||||||||| |||||||| |||||||||||||| || |||||||| || ||
Sbjct 1283 TGTGTTGATCCAAAACTGAAAGGAGAATATCCTCCTAAAGCTGTTGCAAAGCTCGCGGCA 1342
Query 1425 GTTGCAGCGTTGTGTGTGCAATACGAAGCAGAGTTTAGGCCAAACATGAGCATTGTAGTA 1484
|| |||||||||||||||||||| ||| ||||||||||||| |||||||||||||| |||
Sbjct 1343 GTAGCAGCGTTGTGTGTGCAATATGAATCAGAGTTTAGGCCGAACATGAGCATTGTGGTA 1402
Query 1485 AAAGCTCTTCAACCGCTCTTGAGGTCAGCAACAGCTGCTGCT 1526
|||||||||||||| | ||||||||| ||||||| || |||
Sbjct 1403 AAAGCTCTTCAACCATTGTTGAGGTCATCAACAGCAGCAGCT 1444
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65134318950
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5