BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G43235.1
Length=1539
Score E
Sequences producing significant alignments: (Bits) Value
Ahg322000 jgi|Araly1|322000|fgenesh1_pm.C_scaffold_4002057 1203 0.0
> Ahg322000 jgi|Araly1|322000|fgenesh1_pm.C_scaffold_4002057
Length=2415
Score = 1203 bits (651), Expect = 0.0
Identities = 727/764 (95%), Gaps = 4/764 (1%)
Strand=Plus/Plus
Query 1 GAAACATTACACAATGAACATGACTTCGTGttcttcttcatcttcttcttctttcCCACG 60
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1350 GAAACATGACACAATGAACATGACTTCGTGTTCTTCTTCATCTTCTTCTTCTTTCCCACG 1409
Query 61 ACTCTTCGCCGCCAAATCCCAAATCTATAAAGCTCCAGTTTTATCCTTCTCCACTCCTAA 120
||||||||||||||||||||||||||||||||| || || | |||||||||||||| ||
Sbjct 1410 ACTCTTCGCCGCCAAATCCCAAATCTATAAAGCACCTCTTGTGTCCTTCTCCACTCCAAA 1469
Query 121 ACGCCGTCGTCCTCGTCCTCGCCGGAACCGGAAATCTAATGGCTCATCCTACGACCACAC 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1470 ACGCCGTCGTCCTCGTCCTCGCCGGAACCGGAAATCTAATGGCTCATCCTACGACCACAG 1529
Query 181 CGACGGCAATCTTCTTTCTATCTCCACTTCCTCTCCCTCCGGAGCCGACGACCAAAGTCT 240
|||||||||||||||||| |||||||||||||||||| ||||||| ||||||||||||||
Sbjct 1530 CGACGGCAATCTTCTTTCAATCTCCACTTCCTCTCCCGCCGGAGCTGACGACCAAAGTCT 1589
Query 241 CAGCTTAACCCTAGACGTTCACCGTATTTCAACTCTAGCTAATTA-CCGCTTCCAATTGT 299
|||||||||||||||||||||||| ||||||||||||||||| || ||| ||||||||||
Sbjct 1590 CAGCTTAACCCTAGACGTTCACCGGATTTCAACTCTAGCTAA-TACCCGTTTCCAATTGT 1648
Query 300 TTCTCGATTCCAGCAAAGACGCGTTCTCCGACTTGCAAACACTAATCTCACTCGACGATA 359
||||||||||| ||||||||||||||||||||||||||||||||||| | ||||| ||||
Sbjct 1649 TTCTCGATTCCGGCAAAGACGCGTTCTCCGACTTGCAAACACTAATCGCGCTCGATGATA 1708
Query 360 ACCGGAGAGTCGTTGTCTCGTGCAAAAAATCAACTATGCAATTCGTCGGCGGTGTGGTTA 419
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1709 ACCGCAGAGTCGTTGTCTCATGCAAAAAATCAACTATGCAATTCGTCGGCGGTGTGGTTA 1768
Query 420 TACTAGGATTCGTATTTGGTTTTGCAATTAGGGTTCTTGTGAAATTAGGATCAGCTTTAA 479
|||| || |||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1769 TACTTGGGTTCGTATTTGGTATTGCAATTAGGGTTCTTGTGAAATTAGGATCAGCTTTAA 1828
Query 480 AGGGTAATTTCCAAAGTAATCCCAAATTTGTAGTTAGGAGAGATAGGAGTCTTGGTGGGA 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1829 AGGGTAATTTCCAAAGTAATCCCAAATTTGTAGTTAGGAGAGATAGGAGTCTTGGTGGGA 1888
Query 540 AGGAAGTGGTCGTCTCTGTTGATAACATTCGTTCATCTTCAAGAGATTCCAAGAGCT-TC 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1889 AGGAAGTGGTCGTCTCTGTTGATAACATTCGTTCATCTTCAAGAGATTCCAAGAGCTCT- 1947
Query 599 ATAGCTTCTGATCAAGCTTCTCGAAGTAACTCTACGCCTAGAAATCTCCACCTTAAAGCT 658
||||| |||||||||| ||||||||||||||||| || |||||||| ||||| ||||||
Sbjct 1948 ATAGCCTCTGATCAAGTTTCTCGAAGTAACTCTATACCCAGAAATCTTCACCTGAAAGCT 2007
Query 659 CAGAATAATTTGCCGAAATGGTGGCCGACTTCATTGACTAGCCAGAGCTTTGATGTGGTC 718
|||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||
Sbjct 2008 CAGAATAATTTGCCGAAATGGTGGCCGACTTCATTGCCTAGCCAGAACTTTGATGTGGTG 2067
Query 719 GACAAAGAAGACTATCAGAGGGAAGCCAACAGAATCGTTCGAGC 762
|||||||||||||||||||| |||||||||||||||||||||||
Sbjct 2068 GACAAAGAAGACTATCAGAGAGAAGCCAACAGAATCGTTCGAGC 2111
Score = 287 bits (155), Expect = 2e-76
Identities = 161/164 (98%), Gaps = 0/164 (0%)
Strand=Plus/Plus
Query 927 GAGCTCCGTGGGAGTCTTCTTCTGTTGAGATTTGTAGTGAAGATGCCCGAGAGTTCATTG 986
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 2108 GAGCTCCGTGGGAGTCTTCTTCTGTTGAGATTTGTAGTGAAGATGCCAGAGAGTTCATTG 2167
Query 987 CTGGGCTCGCTGAGAACATTGGACTTGCAAAGATAGATGCTGCTAGAATGGTTTCTGCAG 1046
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 2168 CTGGGCTCGCTGAGAACATTGGACTTGCAAAGATAGATGCTGCAAGAATGGTTTCTGCAG 2227
Query 1047 CAGTTGCAGCACGCACACGTTCATGGTTTCTACAAGCTTGGGCT 1090
||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2228 CAGTTGCTGCACGCACACGTTCATGGTTTCTACAAGCTTGGGCT 2271
Score = 267 bits (144), Expect = 2e-70
Identities = 146/147 (99%), Gaps = 0/147 (0%)
Strand=Plus/Plus
Query 1181 GCTGAGATGGAAATGGTTGCAAGAGGGTTGGAGAAACTCATGAAGCTTGAAGAGCGACAG 1240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2269 GCTGAGATGGAAATGGTTGCAAGAGGGTTGGAGAAACTCATGAAGCTTGAAGAGCGACAG 2328
Query 1241 TCTCTACTGAAAACGTTTGTTGGAATGTGTTGCAGTGAAGATAGTCAAAGAAGCGCAGCT 1300
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 2329 TCTCTACTGAAAACGTTTGTTGGAATGTGTTCCAGTGAAGATAGTCAAAGAAGCGCAGCT 2388
Query 1301 GAGGCTCTGGGTTTGGTGCACTGGTAA 1327
|||||||||||||||||||||||||||
Sbjct 2389 GAGGCTCTGGGTTTGGTGCACTGGTAA 2415
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57630540685
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5