BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G43250.1 Length=2381 Score E Sequences producing significant alignments: (Bits) Value Ahg483433 jgi|Araly1|483433|fgenesh2_kg.4__2493__AT2G43250.1 3618 0.0 > Ahg483433 jgi|Araly1|483433|fgenesh2_kg.4__2493__AT2G43250.1 Length=2365 Score = 3618 bits (1959), Expect = 0.0 Identities = 2249/2386 (94%), Gaps = 31/2386 (1%) Strand=Plus/Plus Query 6 TGTTTCATCGACCAAAAAGGACACAGAGAAGAATTGAAGAATCCATTACTGGGTTCGAAC 65 ||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| Sbjct 1 TGTTTCATCGACCAAAAAGGACAGAGAAAAGAATTGAAGAATCCATTACTGGGTTCGAAC 60 Query 66 CATCGAATTTGATACTAATCGGAACCCTAATCTCGAAATCAGTGTATGTCCTTCCTCCGT 125 |||| | | ||||||||||||||||||||||||||||| ||||||||| Sbjct 61 CATC------G------A--GGAACCCTAATCTCGAAATCAGTGTATGTGTTTCCTCCGT 106 Query 126 CTGCTGTGATTCTCAATTTCCCGGTTGGtttttttAAATTCTCTCTCCATCGGCCTTTGT 185 |||||||||||||||||||| |||||||| |||||| ||||| |||||||||| |||||| Sbjct 107 CTGCTGTGATTCTCAATTTCTCGGTTGGTCTTTTTAGATTCTTTCTCCATCGGTCTTTGT 166 Query 186 TGATTCATCTGTGTGCTCGTTTTGATCTTCAAAATTCGATTATAAGTAGATACGAAATTG 245 ||||||||||| ||||| ||||||||| || || ||||||| |||||||| | ||||||| Sbjct 167 TGATTCATCTGAGTGCTTGTTTTGATCGTC-AATTTCGATT-TAAGTAGAGAAGAAATTG 224 Query 246 CCTGCATGATTCAGTA-GACGAATTGCTTTATCTATGCCCAGCTCGATTGAATTC----- 299 | |||||||||||||| | | ||| |||||||||||||||||||| ||||||||| Sbjct 225 CTTGCATGATTCAGTAGGTC-AATAGCTTTATCTATGCCCAGCTCTATTGAATTCGATAG 283 Query 300 AA-TCT-AAGTGTTTTCTCGGATTCGTTTGGTTTGCCTTGGAGGGCTTGGTTTACTGAGG 357 || || ||| |||||||||||||||||||||||||| ||||||||| |||||||||||| Sbjct 284 AAGACTAAAG-GTTTTCTCGGATTCGTTTGGTTTGCCGTGGAGGGCTCGGTTTACTGAGG 342 Query 358 TTGAAAGTCTCTGTCTTTGGAGTCGAATTCGATAATGGTGGCAtttttttttGCGAATAG 417 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 343 TTGAAAGTCTCTGTCTTTGGAGTCGAATTCGATAATGGTGGCATTTTTTTTTGCGAATAG 402 Query 418 TCTTCAAAATATATGGCCCTTTTCGATTTTTCAAAACAGTGACTTGAAGGAATCAAAGGA 477 ||| |||||||||||||||||||| |||||| || |||||||||||||||||||||||| Sbjct 403 TCTGCAAAATATATGGCCCTTTTCAATTTTTGTAAGCAGTGACTTGAAGGAATCAAAGGA 462 Query 478 GCTTGTTCATAGACTTTCGTTACCAGAGAGTACAAAGAACTTTGTGTTTGCTATTAGAGT 537 ||||||||||||||||| || || |||||||||||||||||||| |||||||||||||| Sbjct 463 ACTTGTTCATAGACTTTCATTGCCTGAGAGTACAAAGAACTTTGTTTTTGCTATTAGAGT 522 Query 538 TCCTGAGCATGATTCAACTATTTACATACTTGCTGCTCAGAATTTATCAGAGAGATCTGC 597 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 523 TCCTGAGCATGATTCAACTATTTACATACTTGCTGCTCAGAATTTATCCGAGAGATCTGC 582 Query 598 TAGTGATGCTGAGTGTCTTATACGAGAAATTCGTCCTGGTGCGGTAGTTGCTCAAGTGGA 657 ||||||||| ||||| |||||||| ||||||||||||||||| || || ||||||||||| Sbjct 583 TAGTGATGCCGAGTGCCTTATACGGGAAATTCGTCCTGGTGCTGTTGTGGCTCAAGTGGA 642 Query 658 CAAATCAGCTTTTGGGGAAGCTCAAGTTGAAGAGAGTGTATTAGGAAATGGGAT-TAGTG 716 |||| ||||||||||||||||||||||||||||||||||||||||| || || | ||||| Sbjct 643 CAAAACAGCTTTTGGGGAAGCTCAAGTTGAAGAGAGTGTATTAGGAGAT-GGCTCTAGTG 701 Query 717 ATTCAATCCCTACATCAGCTTTTAAAGTTCTTATACAGTGTTTTGTAGACAAGGTTAACA 776 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 702 ATTCAATCCCTACATCAGCTTTTAAAGTTCTTATACAGTGTTTTGTAGACAAGGTTAACA 761 Query 777 AAGAAAAGTATGAAAGTATTGCAGGGATTGTGGTTTTAAGGGAGATTTTCGGGACAAGTT 836 |||||||||||||| |||||||||||||||||||||| ||||||||||| |||||||||| Sbjct 762 AAGAAAAGTATGAAGGTATTGCAGGGATTGTGGTTTTGAGGGAGATTTTTGGGACAAGTT 821 Query 837 TTAATGGTCATTTATTGGCTGCCAAAAGGGTGGCTGGGGAGGTTGGTTCGTCGTTTATGG 896 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 822 TTAATGGTCATTTATTGGCTGCCAAAAGGGTTGCTGGGGAGGTTGGTTCGTCGTTTATGG 881 Query 897 TTCTGGAATCTCCTTTTGTTGATATTGCTGCCGTGGAAGATGCAGGAGGCAAGATGCAAA 956 | || |||||||||||||| |||| |||||||||||||||| ||||||||||||||||| Sbjct 882 TACTAGAATCTCCTTTTGTCAATATCGCTGCCGTGGAAGATGGAGGAGGCAAGATGCAAA 941 Query 957 GTCTAGCTAATAGTCTCGTACCACAACTTAATGGCTCTGCTATATTTTCAAGCTCGCGAA 1016 ||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| Sbjct 942 GTCTAGCTAATAGTCTCGTACCACAACTTTCTGGCTCTACTATATTTTCAAGCTCGCGAA 1001 Query 1017 GGTTTCTGATAACTAATGATGTCCAGGCACGGATGCTGAAGTTGATATCTTTGCAGATGA 1076 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1002 GGTTTCTGATAACCAATGATGTCCAGGCACGGATGCTGAAGTTGATATCTTTGCAGATGA 1061 Query 1077 ATCAGGTCAATAAAAAACTTAGCCCATCAAGCAGTGTTGCAAGTGGAATTTCCAGTGAGA 1136 |||||||||||||| |||||||||||||||| |||||||||||||| |||||| ||||| Sbjct 1062 ATCAGGTCAATAAAGAACTTAGCCCATCAAGTTGTGTTGCAAGTGGAGTTTCCAATGAGA 1121 Query 1137 TACAGTCCTGTAGTCATGAAGTTCCTCCATTTGCTCAAACCATTTATCCCTTGCTTGTTG 1196 ||||||||||||||||||| ||||| |||||||||||| |||||||||| |||||||||| Sbjct 1122 TACAGTCCTGTAGTCATGAGGTTCCACCATTTGCTCAATCCATTTATCCATTGCTTGTTG 1181 Query 1197 ACCTTCATGATATATTCAGTGATCTCCCATCTATTGGGAAAGCTCTAGCCAATGCCAGAA 1256 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 1182 ACCTTCATGATATATTCATTGATCTCCCATCTATTGGGAAAGCTCTAGCCAATGCCAGAA 1241 Query 1257 GAATGTTGTCTGATGTTAATAGAGGGGAGTCTATGGATACAGAGGTTATTTCTGAAGTTT 1316 |||||||||||||||| |||| |||||||||||||||||||| ||||||||||||||||| Sbjct 1242 GAATGTTGTCTGATGTAAATAAAGGGGAGTCTATGGATACAGGGGTTATTTCTGAAGTTT 1301 Query 1317 ACCTTTTCCAGATTGCAGTTGAAGGTCTAAGAATTGCTTTGAACAATGCTGGTCGCCTAC 1376 ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 1302 ACCTTTTTCAGATTGCAGTTGAAGGTCTAAGAATTGCTTTGAACAATGCTGGTCGGCTAC 1361 Query 1377 CAATCAAGAACATGGGAAGTTCAAGCCGAACCGAAGTTCAGTTTTCACAGCTCTCTTCTG 1436 |||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| Sbjct 1362 CAATCAAGAACATGGGAAGTTCAAGCCGCACTGAAGTTCAGTTTTCACAGCTCTCTTCTG 1421 Query 1437 AAGACAAATCTTACGCACTTATGGCAGATCTTCTTCGTAACCAGGCTAAAAAGTTCAAGA 1496 ||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1422 AAGACAAATCTTATGCACTTATGGCAGATCTTCTTCGTAGCCAGGCTAAAAAGTTCAAGA 1481 Query 1497 ACATTGTAGCAATAGTAGATGCATGTAGCCTCGCAGGTCTTAGGAAGCACTGGAAAACTT 1556 |||| |||||| ||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 1482 ACATAGTAGCAGTAGTAGATGCATGTAGCCTCGCAGGTCTTAGGAAGCATTGGAAAACTT 1541 Query 1557 GTGTTCCTCAAGAAGTCAAAGATATGTCTGAGTATATGCTACAAGATTTTGATAACGACG 1616 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 1542 GTGTTCCTCAAGAAGTCAAAGATATGTCTGAGAATATGCTACAAGATTTTGATAACGACG 1601 Query 1617 AGAAGACTAATGATTCAAAGTTGAAACGACTGTTATCTGATAAACCGGTGGTAGCAGTTG 1676 |||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| Sbjct 1602 AGAAGACTAATGATTCAAAGTTAAAACGACTGTTATCTGATAAACCGGTTGTAGCAGTTG 1661 Query 1677 GTGCTGGTGCAACTGCTATCTGGGGGGCTTCTTCACTATCCAAGGCCATTTCTGCTTCTC 1736 |||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 1662 GTGCCGGTGCGACTGCTATCTGGGGTGCTTCTTCACTATCCAAGGCCATTTCTGCTTCTC 1721 Query 1737 CTTTCTTCAAGATTGTAACTTTCAAAGTCCCGGGATCATTGAACCTCTTTT-TGACACAT 1795 |||||||||||||||||||||| |||||||||| |||||||||||| |||| |||||||| Sbjct 1722 CTTTCTTCAAGATTGTAACTTTTAAAGTCCCGGCATCATTGAACCT-TTTTCTGACACAT 1780 Query 1796 ACCCATAAGGCAGTGACATTTGCATTTACCAAAGTGGCGGTTCCGTCTAAAGCAATGGCC 1855 |||||||||||| |||||||||||||||| |||||||||||||| || |||||||||||| Sbjct 1781 ACCCATAAGGCACTGACATTTGCATTTACTAAAGTGGCGGTTCCATCAAAAGCAATGGCC 1840 Query 1856 CCCGGTTTTGCTAGTTCTGGAGCCAAATCAACATCTTTGGTAAAAGCATCTTTATCCGCC 1915 || || ||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1841 CCAGGATTTGCTAGTTCTGGAGCCAAATCAACATCTTTGATAAAAGCATCTTTATCCGCC 1900 Query 1916 GAGAAAATCAGAGCAGTAACACATAGCATTATAGCTTCTGTAGAAAAGACAAGTTTATCT 1975 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1901 GAGAAAATCAGAGCAGTAACACATAGCATTATAGCTTCTGTAGAAAAGACAAGTTTATCT 1960 Query 1976 GCCATGAGAACTGCATTCTATGAGATCATGAGGAAAAGACGAGCAAAACCTATCGGTACC 2035 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1961 GCCATGAGAACTGCATTCTATGAGATCATGCGGAAAAGACGAGCAAAACCTATCGGTACC 2020 Query 2036 TTACCATTGGTGACATTTGGAGCCAGCCTTGCAACTTGTGCGGGATTGTTCGCCTATGGA 2095 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2021 TTACCATTGGCGACATTTGGAGCCAGCCTTGCAACTTGTGCGGGATTGTTCGCCTATGGA 2080 Query 2096 GATGGGATCGAATGTGCAGCTATGTCTCTTCCTTCAGCTCCTTCGATTGCAAACTTGGGT 2155 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 2081 GATGGGATCGAATGTGCAGCTATGTCTCTTCCTTCAGCTCCTTCGATAGCAAACTTGGGT 2140 Query 2156 AGAGGGATTCAAAACTTACATGAGGCGTCTCTGGAAGTGAGAATGAGAGAAGGCAACAGG 2215 |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2141 CGAGGAATTCAAAACTTACATGAGGCGTCTCTGGAAGTGAGAATGAGAGAAGGCAACAGG 2200 Query 2216 ATACAGAACGCCATCGAGTCCCTTAGACAAAGACTGAAGAAAGTAAAGTTTTAACGAAGA 2275 ||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 2201 ATACAGAACGCAATCGAGTCCCTTAGACAAAGACTGAAGAAAGTCAAGTTTTAACGAAGA 2260 Query 2276 ATAGGGTATATTTTTATACTTTCACTTAAATCTTTGTTTTAGCTTACTGTATATATACAT 2335 | || |||| |||| ||| ||| |||||||||||| |||||||||||||||||||||||| Sbjct 2261 AGAGAGTATCTTTT-ATAATTTGACTTAAATCTTTCTTTTAGCTTACTGTATATATACAT 2319 Query 2336 ACTCTCTACATGTTTCGTGTTCAGCTAATGGTTTGGTTTGCACATG 2381 |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2320 ACTCTCTACATGTTTCGTGTTCAGCTAATGGTTTGGTTTGCACATG 2365 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 89702526975 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5