BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G43250.1
Length=2381
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483433 jgi|Araly1|483433|fgenesh2_kg.4__2493__AT2G43250.1 3618 0.0
> Ahg483433 jgi|Araly1|483433|fgenesh2_kg.4__2493__AT2G43250.1
Length=2365
Score = 3618 bits (1959), Expect = 0.0
Identities = 2249/2386 (94%), Gaps = 31/2386 (1%)
Strand=Plus/Plus
Query 6 TGTTTCATCGACCAAAAAGGACACAGAGAAGAATTGAAGAATCCATTACTGGGTTCGAAC 65
||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct 1 TGTTTCATCGACCAAAAAGGACAGAGAAAAGAATTGAAGAATCCATTACTGGGTTCGAAC 60
Query 66 CATCGAATTTGATACTAATCGGAACCCTAATCTCGAAATCAGTGTATGTCCTTCCTCCGT 125
|||| | | ||||||||||||||||||||||||||||| |||||||||
Sbjct 61 CATC------G------A--GGAACCCTAATCTCGAAATCAGTGTATGTGTTTCCTCCGT 106
Query 126 CTGCTGTGATTCTCAATTTCCCGGTTGGtttttttAAATTCTCTCTCCATCGGCCTTTGT 185
|||||||||||||||||||| |||||||| |||||| ||||| |||||||||| ||||||
Sbjct 107 CTGCTGTGATTCTCAATTTCTCGGTTGGTCTTTTTAGATTCTTTCTCCATCGGTCTTTGT 166
Query 186 TGATTCATCTGTGTGCTCGTTTTGATCTTCAAAATTCGATTATAAGTAGATACGAAATTG 245
||||||||||| ||||| ||||||||| || || ||||||| |||||||| | |||||||
Sbjct 167 TGATTCATCTGAGTGCTTGTTTTGATCGTC-AATTTCGATT-TAAGTAGAGAAGAAATTG 224
Query 246 CCTGCATGATTCAGTA-GACGAATTGCTTTATCTATGCCCAGCTCGATTGAATTC----- 299
| |||||||||||||| | | ||| |||||||||||||||||||| |||||||||
Sbjct 225 CTTGCATGATTCAGTAGGTC-AATAGCTTTATCTATGCCCAGCTCTATTGAATTCGATAG 283
Query 300 AA-TCT-AAGTGTTTTCTCGGATTCGTTTGGTTTGCCTTGGAGGGCTTGGTTTACTGAGG 357
|| || ||| |||||||||||||||||||||||||| ||||||||| ||||||||||||
Sbjct 284 AAGACTAAAG-GTTTTCTCGGATTCGTTTGGTTTGCCGTGGAGGGCTCGGTTTACTGAGG 342
Query 358 TTGAAAGTCTCTGTCTTTGGAGTCGAATTCGATAATGGTGGCAtttttttttGCGAATAG 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 343 TTGAAAGTCTCTGTCTTTGGAGTCGAATTCGATAATGGTGGCATTTTTTTTTGCGAATAG 402
Query 418 TCTTCAAAATATATGGCCCTTTTCGATTTTTCAAAACAGTGACTTGAAGGAATCAAAGGA 477
||| |||||||||||||||||||| |||||| || ||||||||||||||||||||||||
Sbjct 403 TCTGCAAAATATATGGCCCTTTTCAATTTTTGTAAGCAGTGACTTGAAGGAATCAAAGGA 462
Query 478 GCTTGTTCATAGACTTTCGTTACCAGAGAGTACAAAGAACTTTGTGTTTGCTATTAGAGT 537
||||||||||||||||| || || |||||||||||||||||||| ||||||||||||||
Sbjct 463 ACTTGTTCATAGACTTTCATTGCCTGAGAGTACAAAGAACTTTGTTTTTGCTATTAGAGT 522
Query 538 TCCTGAGCATGATTCAACTATTTACATACTTGCTGCTCAGAATTTATCAGAGAGATCTGC 597
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 523 TCCTGAGCATGATTCAACTATTTACATACTTGCTGCTCAGAATTTATCCGAGAGATCTGC 582
Query 598 TAGTGATGCTGAGTGTCTTATACGAGAAATTCGTCCTGGTGCGGTAGTTGCTCAAGTGGA 657
||||||||| ||||| |||||||| ||||||||||||||||| || || |||||||||||
Sbjct 583 TAGTGATGCCGAGTGCCTTATACGGGAAATTCGTCCTGGTGCTGTTGTGGCTCAAGTGGA 642
Query 658 CAAATCAGCTTTTGGGGAAGCTCAAGTTGAAGAGAGTGTATTAGGAAATGGGAT-TAGTG 716
|||| ||||||||||||||||||||||||||||||||||||||||| || || | |||||
Sbjct 643 CAAAACAGCTTTTGGGGAAGCTCAAGTTGAAGAGAGTGTATTAGGAGAT-GGCTCTAGTG 701
Query 717 ATTCAATCCCTACATCAGCTTTTAAAGTTCTTATACAGTGTTTTGTAGACAAGGTTAACA 776
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 702 ATTCAATCCCTACATCAGCTTTTAAAGTTCTTATACAGTGTTTTGTAGACAAGGTTAACA 761
Query 777 AAGAAAAGTATGAAAGTATTGCAGGGATTGTGGTTTTAAGGGAGATTTTCGGGACAAGTT 836
|||||||||||||| |||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 762 AAGAAAAGTATGAAGGTATTGCAGGGATTGTGGTTTTGAGGGAGATTTTTGGGACAAGTT 821
Query 837 TTAATGGTCATTTATTGGCTGCCAAAAGGGTGGCTGGGGAGGTTGGTTCGTCGTTTATGG 896
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 822 TTAATGGTCATTTATTGGCTGCCAAAAGGGTTGCTGGGGAGGTTGGTTCGTCGTTTATGG 881
Query 897 TTCTGGAATCTCCTTTTGTTGATATTGCTGCCGTGGAAGATGCAGGAGGCAAGATGCAAA 956
| || |||||||||||||| |||| |||||||||||||||| |||||||||||||||||
Sbjct 882 TACTAGAATCTCCTTTTGTCAATATCGCTGCCGTGGAAGATGGAGGAGGCAAGATGCAAA 941
Query 957 GTCTAGCTAATAGTCTCGTACCACAACTTAATGGCTCTGCTATATTTTCAAGCTCGCGAA 1016
||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||
Sbjct 942 GTCTAGCTAATAGTCTCGTACCACAACTTTCTGGCTCTACTATATTTTCAAGCTCGCGAA 1001
Query 1017 GGTTTCTGATAACTAATGATGTCCAGGCACGGATGCTGAAGTTGATATCTTTGCAGATGA 1076
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1002 GGTTTCTGATAACCAATGATGTCCAGGCACGGATGCTGAAGTTGATATCTTTGCAGATGA 1061
Query 1077 ATCAGGTCAATAAAAAACTTAGCCCATCAAGCAGTGTTGCAAGTGGAATTTCCAGTGAGA 1136
|||||||||||||| |||||||||||||||| |||||||||||||| |||||| |||||
Sbjct 1062 ATCAGGTCAATAAAGAACTTAGCCCATCAAGTTGTGTTGCAAGTGGAGTTTCCAATGAGA 1121
Query 1137 TACAGTCCTGTAGTCATGAAGTTCCTCCATTTGCTCAAACCATTTATCCCTTGCTTGTTG 1196
||||||||||||||||||| ||||| |||||||||||| |||||||||| ||||||||||
Sbjct 1122 TACAGTCCTGTAGTCATGAGGTTCCACCATTTGCTCAATCCATTTATCCATTGCTTGTTG 1181
Query 1197 ACCTTCATGATATATTCAGTGATCTCCCATCTATTGGGAAAGCTCTAGCCAATGCCAGAA 1256
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1182 ACCTTCATGATATATTCATTGATCTCCCATCTATTGGGAAAGCTCTAGCCAATGCCAGAA 1241
Query 1257 GAATGTTGTCTGATGTTAATAGAGGGGAGTCTATGGATACAGAGGTTATTTCTGAAGTTT 1316
|||||||||||||||| |||| |||||||||||||||||||| |||||||||||||||||
Sbjct 1242 GAATGTTGTCTGATGTAAATAAAGGGGAGTCTATGGATACAGGGGTTATTTCTGAAGTTT 1301
Query 1317 ACCTTTTCCAGATTGCAGTTGAAGGTCTAAGAATTGCTTTGAACAATGCTGGTCGCCTAC 1376
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1302 ACCTTTTTCAGATTGCAGTTGAAGGTCTAAGAATTGCTTTGAACAATGCTGGTCGGCTAC 1361
Query 1377 CAATCAAGAACATGGGAAGTTCAAGCCGAACCGAAGTTCAGTTTTCACAGCTCTCTTCTG 1436
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 1362 CAATCAAGAACATGGGAAGTTCAAGCCGCACTGAAGTTCAGTTTTCACAGCTCTCTTCTG 1421
Query 1437 AAGACAAATCTTACGCACTTATGGCAGATCTTCTTCGTAACCAGGCTAAAAAGTTCAAGA 1496
||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1422 AAGACAAATCTTATGCACTTATGGCAGATCTTCTTCGTAGCCAGGCTAAAAAGTTCAAGA 1481
Query 1497 ACATTGTAGCAATAGTAGATGCATGTAGCCTCGCAGGTCTTAGGAAGCACTGGAAAACTT 1556
|||| |||||| ||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1482 ACATAGTAGCAGTAGTAGATGCATGTAGCCTCGCAGGTCTTAGGAAGCATTGGAAAACTT 1541
Query 1557 GTGTTCCTCAAGAAGTCAAAGATATGTCTGAGTATATGCTACAAGATTTTGATAACGACG 1616
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1542 GTGTTCCTCAAGAAGTCAAAGATATGTCTGAGAATATGCTACAAGATTTTGATAACGACG 1601
Query 1617 AGAAGACTAATGATTCAAAGTTGAAACGACTGTTATCTGATAAACCGGTGGTAGCAGTTG 1676
|||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 1602 AGAAGACTAATGATTCAAAGTTAAAACGACTGTTATCTGATAAACCGGTTGTAGCAGTTG 1661
Query 1677 GTGCTGGTGCAACTGCTATCTGGGGGGCTTCTTCACTATCCAAGGCCATTTCTGCTTCTC 1736
|||| ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1662 GTGCCGGTGCGACTGCTATCTGGGGTGCTTCTTCACTATCCAAGGCCATTTCTGCTTCTC 1721
Query 1737 CTTTCTTCAAGATTGTAACTTTCAAAGTCCCGGGATCATTGAACCTCTTTT-TGACACAT 1795
|||||||||||||||||||||| |||||||||| |||||||||||| |||| ||||||||
Sbjct 1722 CTTTCTTCAAGATTGTAACTTTTAAAGTCCCGGCATCATTGAACCT-TTTTCTGACACAT 1780
Query 1796 ACCCATAAGGCAGTGACATTTGCATTTACCAAAGTGGCGGTTCCGTCTAAAGCAATGGCC 1855
|||||||||||| |||||||||||||||| |||||||||||||| || ||||||||||||
Sbjct 1781 ACCCATAAGGCACTGACATTTGCATTTACTAAAGTGGCGGTTCCATCAAAAGCAATGGCC 1840
Query 1856 CCCGGTTTTGCTAGTTCTGGAGCCAAATCAACATCTTTGGTAAAAGCATCTTTATCCGCC 1915
|| || ||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1841 CCAGGATTTGCTAGTTCTGGAGCCAAATCAACATCTTTGATAAAAGCATCTTTATCCGCC 1900
Query 1916 GAGAAAATCAGAGCAGTAACACATAGCATTATAGCTTCTGTAGAAAAGACAAGTTTATCT 1975
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1901 GAGAAAATCAGAGCAGTAACACATAGCATTATAGCTTCTGTAGAAAAGACAAGTTTATCT 1960
Query 1976 GCCATGAGAACTGCATTCTATGAGATCATGAGGAAAAGACGAGCAAAACCTATCGGTACC 2035
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1961 GCCATGAGAACTGCATTCTATGAGATCATGCGGAAAAGACGAGCAAAACCTATCGGTACC 2020
Query 2036 TTACCATTGGTGACATTTGGAGCCAGCCTTGCAACTTGTGCGGGATTGTTCGCCTATGGA 2095
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2021 TTACCATTGGCGACATTTGGAGCCAGCCTTGCAACTTGTGCGGGATTGTTCGCCTATGGA 2080
Query 2096 GATGGGATCGAATGTGCAGCTATGTCTCTTCCTTCAGCTCCTTCGATTGCAAACTTGGGT 2155
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 2081 GATGGGATCGAATGTGCAGCTATGTCTCTTCCTTCAGCTCCTTCGATAGCAAACTTGGGT 2140
Query 2156 AGAGGGATTCAAAACTTACATGAGGCGTCTCTGGAAGTGAGAATGAGAGAAGGCAACAGG 2215
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2141 CGAGGAATTCAAAACTTACATGAGGCGTCTCTGGAAGTGAGAATGAGAGAAGGCAACAGG 2200
Query 2216 ATACAGAACGCCATCGAGTCCCTTAGACAAAGACTGAAGAAAGTAAAGTTTTAACGAAGA 2275
||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 2201 ATACAGAACGCAATCGAGTCCCTTAGACAAAGACTGAAGAAAGTCAAGTTTTAACGAAGA 2260
Query 2276 ATAGGGTATATTTTTATACTTTCACTTAAATCTTTGTTTTAGCTTACTGTATATATACAT 2335
| || |||| |||| ||| ||| |||||||||||| ||||||||||||||||||||||||
Sbjct 2261 AGAGAGTATCTTTT-ATAATTTGACTTAAATCTTTCTTTTAGCTTACTGTATATATACAT 2319
Query 2336 ACTCTCTACATGTTTCGTGTTCAGCTAATGGTTTGGTTTGCACATG 2381
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2320 ACTCTCTACATGTTTCGTGTTCAGCTAATGGTTTGGTTTGCACATG 2365
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 89702526975
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5