BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G43270.1
Length=1164
Score E
Sequences producing significant alignments: (Bits) Value
Ahg322004 jgi|Araly1|322004|fgenesh1_pm.C_scaffold_4002061 501 4e-141
Ahg483455 jgi|Araly1|483455|fgenesh2_kg.4__2515__AT2G43445.1 180 2e-44
Ahg934391 jgi|Araly1|934391|scaffold_402379.1 158 1e-37
Ahg901608 jgi|Araly1|901608|Al_scaffold_0004_2258 134 2e-30
> Ahg322004 jgi|Araly1|322004|fgenesh1_pm.C_scaffold_4002061
Length=1167
Score = 501 bits (271), Expect = 4e-141
Identities = 472/565 (84%), Gaps = 29/565 (5%)
Strand=Plus/Plus
Query 7 TACGTAGTTCCCGATCTACTTGAAGAAATTTTCCTTGGATTGCCTTTAAAATCAATCCTC 66
||| ||||| ||||| |||| |||||||| || |||||| |||| || |||||| || ||
Sbjct 7 TACCTAGTTACCGATTTACTGGAAGAAATCTTACTTGGACTGCCGTTGAAATCAGTCTTC 66
Query 67 AGATTCAAAACCGTCTCAAAACAATGGAGATCAATCCTGGAATCGAAGAGTTTCGCGGAG 126
||||||||||| |||||||| |||||||||||||||||||| |||| ||| |||| |||
Sbjct 67 AGATTCAAAACAGTCTCAAAGCAATGGAGATCAATCCTGGAGTCGAGGAGGTTCGTGGAT 126
Query 127 AGGCGTTT---GAACGTTGAGAAGAAGGAGAAAATTCTGGCTGTTGGAG-A--CCGGACT 180
| |||||| ||| ||| |||||||| |||||| || ||||| |||| | ||||||
Sbjct 127 ATGCGTTTGAAGAAAGTTCAGAAGAAGCTGAAAATCCTAGCTGTGGGAGAAGGCCGGACC 186
Query 181 GAGTTGGGATTCGAAGGTGAGGAAGAGATCCAGATGGTCTATTTACACTGCGATATTGAC 240
||| ||||||||||||||| ||||||||| ||||| |||||||||| |||| | ||||
Sbjct 187 AAGTCGGGATTCGAAGGTGACGAAGAGATCGAGATGATCTATTTACATTGCG--A-TGAC 243
Query 241 GCCACACGACCCTCTCTGACATGT-GAGGGTTTGGTGTGTATCCCAGCACCAGGTTGGAT 299
||||||| |||||| ||||||| | || |||||||| || |||||| ||||||||||||
Sbjct 244 GCCACACAACCCTCGCTGACAT-TCGACGGTTTGGTCTGCATCCCAAAACCAGGTTGGAT 302
Query 300 CAACGTTTTGAACCCATCGACCAGACAACTCCGGAGATTTCCTTGTAGCCCTA-ATCATC 358
|||||||||||||||||||||||||||||||||| |||| ||||||||||| | ||||||
Sbjct 303 CAACGTTTTGAACCCATCGACCAGACAACTCCGGCGATTCCCTTGTAGCCC-AGATCATC 361
Query 359 ACGTG-C-CCTCT--GATCGTATTCGTTTTCAGTTCAGAGAC-GAACTATACCTCACTTC 413
|||| | ||| | | || || |||| ||| | |||| | | | |||||||||||
Sbjct 362 CCGTGTCTCCTTTTTG-TCTTAATCGT---CAGCTAAGAGCCTGGCC-ATACCTCACTTT 416
Query 414 CTTTCCGGGGAATTGGG-AGATGGGATTTGGTAGAGACAAATTTAATGGTAGCTATAAAG 472
||| ||||| ||||||| | |||||||| |||||||| ||| |||||||| |||||||||
Sbjct 417 CTTCCCGGGAAATTGGGCA-ATGGGATTCGGTAGAGATAAAGTTAATGGTTGCTATAAAG 475
Query 473 TGGTGAGGATGTGTTTT-AGTCCTGTGGAAAAATGCGAGGTTCTTGATGTTGAAACTGGG 531
||||||||||||||||| | |||||||||| |||| |||||||||||| ||||||| ||
Sbjct 476 TGGTGAGGATGTGTTTTGA-TCCTGTGGAAGAATGTGAGGTTCTTGATCTTGAAACAGGT 534
Query 532 GAATGGAGTGAA-CTGAATCCACCT 555
|||||||| ||| |||| |||||||
Sbjct 535 GAATGGAG-GAAACTGATTCCACCT 558
Score = 484 bits (262), Expect = 5e-136
Identities = 427/502 (85%), Gaps = 30/502 (6%)
Strand=Plus/Plus
Query 598 CTAGCCTTGGATCTTCACACACTAGAGTTCCACA-ATGTTTCCG-TTCCATC-TACGT-G 653
||||||||| ||||||||||||||||||||| | |||||| || ||||| | ||||| |
Sbjct 652 CTAGCCTTGAATCTTCACACACTAGAGTTCC-GATATGTTT-CGATTCCA-CATACGTGG 708
Query 654 TTGCA-CCATGAGTGCCCAGATGGTGAACCTTGATGACCGTCTAGCCATAACTAAAACAA 712
|| || || ||| | ||||||| |||||||||| ||||||||||||||| | ||||| |
Sbjct 709 TT-CACCCTTGA-TACCCAGATAATGAACCTTGAGGACCGTCTAGCCATAGCCAAAACCA 766
Query 713 ACGGTGCGCCAGAATGGGAGCTAGAGATACTGAGCCTGATGGATGT-AGACA-AAGAAAT 770
| |||| ||| |||||||| ||||| ||||||||| |||||||| | ||| | ||||| |
Sbjct 767 ATGGTGGGCCTGAATGGGAACTAGAAATACTGAGCATGATGGAT-TCAGA-AGAAGAATT 824
Query 771 ATGGAGCAAGACTTACTCCATAACTTTAGCCAGTATCATTATTAACCACCCATGGGAGTC 830
||||| ||||||||||||||||||||||||||||||||||||| || |||||||||| |
Sbjct 825 ATGGACCAAGACTTACTCCATAACTTTAGCCAGTATCATTATTGGCCTCCCATGGGAG-C 883
Query 831 -TAGTTGGTTCACGGTGTTGACGGTTTCTAAGCTAGGGAATCTTGTCTTTTGTGACAATC 889
|||||||||||||||| |||| ||||| ||| |||||||||||||||| | |||||| |
Sbjct 884 ATAGTTGGTTCACGGTGGTGACTGTTTCAAAGTTAGGGAATCTTGTCTTGTATGACAAAC 943
Query 890 ACAAGCGGTTGTTTAAATATAATACCGAGACAAATGAGATTTGCTGTCTCTCCTCAGATA 949
||||| || |||| ||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 944 ACAAGAGGCTGTTCAAATATAATACAAAGACAAATGAGATTTGCTGTCTCTCCTCAAATA 1003
Query 950 TTTCTGTTATATCTCCTTATCTCGAGGATTTGGTACCACTTCGTTTGGACTCAGGACAT- 1008
||||||||||||||| || |||||| |||||| ||||||||| | |||||||||||||
Sbjct 1004 TTTCTGTTATATCTCTTTGCCTCGAGAATTTGGCACCACTTCGATCGGACTCAGGACATC 1063
Query 1009 ----G-ATC---ATC-GG-G-ATTACAAAATCAGGACATCTAGTTGCGGATTGT-TTTCG 1056
| ||| ||| || | |||| |||||||||| ||||||||||||||||| ||| |
Sbjct 1064 ATCCGGATCCGGATCCGGAGGATTATAAAATCAGGATATCTAGTTGCGGATTGTGTTT-G 1122
Query 1057 AAGCATCCGGAGGCAGGGTTAT 1078
|||||||||||||| ||| |||
Sbjct 1123 AAGCATCCGGAGGCCGGGATAT 1144
> Ahg483455 jgi|Araly1|483455|fgenesh2_kg.4__2515__AT2G43445.1
Length=1067
Score = 180 bits (97), Expect = 2e-44
Identities = 120/131 (92%), Gaps = 2/131 (2%)
Strand=Plus/Plus
Query 3 GATTTACGTAGTTCCCGATCTACTTGAAGAAATTTTCCTTGGATTGCCTTTAAAATCAAT 62
||| ||| |||||||||| ||||| ||||||||||||||||||||||| || ||||||||
Sbjct 56 GATCTACATAGTTCCCGAGCTACTGGAAGAAATTTTCCTTGGATTGCCGTTGAAATCAAT 115
Query 63 CCTCAGATTCAAAACCGTCTCAAAACAATGGAGATCAATCCTGGAATCGAAGA-GTTTCG 121
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct 116 CCTCAGATTCAAAACCGTCTCAAAACAATGGAGATCAATCCTGGAATCGAAGTTGTT-CG 174
Query 122 CGGAGAGGCGT 132
||| ||||||
Sbjct 175 TGGAAAGGCGT 185
> Ahg934391 jgi|Araly1|934391|scaffold_402379.1
Length=691
Score = 158 bits (85), Expect = 1e-37
Identities = 377/511 (74%), Gaps = 48/511 (9%)
Strand=Plus/Plus
Query 591 CGGAATCCTAGCCTTGGATCTTCACACACTAGAGTTCCACAATGTTTCCGTTCCATCTAC 650
|||||| ||||| ||||||||||||| | ||||||||| |||| || ||||| ||
Sbjct 74 CGGAATTCTAGCATTGGATCTTCACAAAGAAGAGTTCCATTATGTCTCTGTTCCGGATAA 133
Query 651 GT-GTTGC-ACCATGAGTGCCCAGATGGTGAACCTTGATGACCGTCTAGCCATAACTAA- 707
|| | | | | || ||| ||| ||| | |||||||||||||||||| ||||| | ||
Sbjct 134 GTGGGT-CAAGCA-AAGTACCCTGATAGCCAACCTTGATGACCGTCTAACCATAGCCAAT 191
Query 708 A-ACAAACG---G-TGCGCCAGAATGGGAG-CTAGAGATACTG-AGCCTGATGGATGTAG 760
| | ||| | | | || | |||| ||||||||| || || | ||| ||| |
Sbjct 192 ACGCCTACGTCTGTTTATTCTGACT-GGAGACTAGAGATA-TGTAG-C--ATGAATGCAC 246
Query 761 ACAAAGAAATATGGAGCAAGACTTACTCCATAACTTTAGCCAGTAT-C-A--TTATTAAC 816
| |||||||||||||||||||||||||||||| | ||| || | | | || ||||
Sbjct 247 ATGAAGAAATATGGAGCAAGACTTACTCCATAAGTCTAGATGGTCTTCTAGCTT-TTAAG 305
Query 817 C-ACC-CATG---GGAG-T-C-TAGTTGGTTCACGGTGTTGACGGTTTCTAAGCTAGGGA 868
| ||| | | || | | | | || |||||||| | || | ||||| ||| ||||
Sbjct 306 CTACCACGTTCAAGGTGGTGCAT-GT-GGTTCACGCCGCTGGCTGTTTCCAAGG-AGGGG 362
Query 869 -ATCTTGTCTTTTGTGACAATCAC-AAGCGGTTGTTTAAATATAATACC--GAGACAAAT 924
||||| |||||| | ||||| || || ||||||| |||||| | || |||||| |
Sbjct 363 GATCTTATCTTTTATAACAATTACCAAT-GGTTGTTCAAATAT--TGCCCAGAGACACGT 419
Query 925 GAGATTTGCTGTCTCTCCTCAGATATTTCTGTTATATCTCCTTATCTCGAGGATTTGGTA 984
||| || ||||||||||| ||||| | ||||||||||||||| |||||| |||||||
Sbjct 420 GAGCTTCATTGTCTCTCCTCTGATATATGTGTTATATCTCCTTACCTCGAGAATTTGGTC 479
Query 985 CCACTTCGTTTGGACTCAGGACATGATC-A--TCGGGATTACAA-AA--TCAGGACATCT 1038
|||||||| | || || |||||| ||| | || |||| | || || |||||||||||
Sbjct 480 CCACTTCGGTCAGAGTCTGGACATCATCCAGATCCGGATGATAATAAAGTCAGGACATCT 539
Query 1039 AGTTGCGGATTGTTTT-CGAAGCATCCGGAG 1068
|| |||||||| |||| | ||||||||||||
Sbjct 540 AGCTGCGGATT-TTTTACCAAGCATCCGGAG 569
> Ahg901608 jgi|Araly1|901608|Al_scaffold_0004_2258
Length=630
Score = 134 bits (72), Expect = 2e-30
Identities = 117/138 (85%), Gaps = 6/138 (4%)
Strand=Plus/Plus
Query 3 GATTTACGTAGTTCCCG-ATCTACTT-GAAGAAATTTTCCTTGGATTGCCTTTAAAATCA 60
||| ||| ||||||||| || || || ||||||||||||||| ||||||| || ||| ||
Sbjct 30 GATCTACATAGTTCCCGAAT-TA-TTGGAAGAAATTTTCCTTCGATTGCCATTGAAACCA 87
Query 61 ATCCTCAGATTCAAAACCGTCTCAAAACAATGGAGATCAATCCTGGAATCGAAGA-GTTT 119
|| |||| ||||||||||||||||||||||||||||| | ||||||||||||| | |||
Sbjct 88 ATTCTCAAATTCAAAACCGTCTCAAAACAATGGAGATTAGTCCTGGAATCGAAAATGTT- 146
Query 120 CGCGGAGAGGCGTTTGAA 137
|| ||| | |||| ||||
Sbjct 147 CGTGGAAAAGCGTATGAA 164
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43422002463
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5