BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G43280.1
Length=823
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483435 jgi|Araly1|483435|fgenesh2_kg.4__2495__AT2G43280.1 1286 0.0
> Ahg483435 jgi|Araly1|483435|fgenesh2_kg.4__2495__AT2G43280.1
Length=814
Score = 1286 bits (696), Expect = 0.0
Identities = 779/818 (95%), Gaps = 9/818 (1%)
Strand=Plus/Plus
Query 1 GCTCGTGCAGCTGAAGATCCCTGCTCTGATTCGTCAAATCCATGGAAGATGAGGATGATC 60
||||||||||| |||||| |||||||||| ||||||||||||||||||||||||||||||
Sbjct 1 GCTCGTGCAGCCGAAGAT-CCTGCTCTGA-TCGTCAAATCCATGGAAGATGAGGATGATC 58
Query 61 CAACCACAAAGAACAGCAACAACACAGATGATTTTGCTATAGAGCCTCGTGAAGGGATT- 119
| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 59 TAGCCACTAAGAACAGCAACAACACAGATGATTTTGCTATAGAGCCTCGTGAAGGGATTG 118
Query 120 ATATTTGAATCCGAGGATGCAGCTAAGATGTTCTATGATGATTACTCTAGACGATTAGGG 179
| |||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 119 A-ATTTGAATCCGAGGATGCGGCTAAGATGTTCTATGATGATTACTCTAGACGTTTAGGG 177
Query 180 TTTGTAATGCGTGTAATGTCTTGCCGAAGATCCGAGAAAGACGGAAGAATTCTTGCCCGG 239
|||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 178 TTTGTAATGCGTGTAATGTCTTGCCGGAGATCCGAGAAAGACGGAAGAATCCTTGCCCGG 237
Query 240 AGATTCGGTTGTAACAAAGAAGGTCATTGTGTTAGTATTCGTGGTAAGTTTGGATCAGTT 299
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 238 AGATTCGGTTGTAACAAAGAAGGTCATTGTGTTAGTATCCGTGGTAAGTTTGGATCAGTT 297
Query 300 AGGAAACCTAGACCGAGTACAAGAGAAGGTTGCAAAGCTATGATTCATGTTAAGTATGAC 359
|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 298 AGGAAACCAAGACCGAGTACAAGAGAAGGTTGCAAAGCCATGATTCATGTTAAGTATGAC 357
Query 360 CGGTCTGGCAAATGGGTCATTACCAAATTCGTCAAAGAACATAACCATCCACTCGTTGTT 419
|| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 358 CGCTCTGGCAAATGGGTCATTACCAAATTCGTCAAAGAACATAACCATCCACTAGTTGTT 417
Query 420 TCACCTCGCGAGGCTCGCCATACCCTGGACGAGAAGGATAAGAGAATTCAAGAACTGACG 479
||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 418 TCACCTCGCGAGGCTCGCCATACTCTGGACGAAAAGGATAAGAGAATTCAAGAACTGACG 477
Query 480 ATAGAGCTGCGAAACAAGAAGCGGTTATGTGCAGCGTACAAGGAACAGTTAGATGCTTTT 539
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct 478 ATAGAGCTGCGAAACAAGAAGCGGTTATGTGCAGCGTACAAGGAACAGCTAGATGCATTT 537
Query 540 GCAAAGATTGTTGAAGAGCATAGTAATCAGATAGCAAAGAAAGTTGAGAATGTAGTGAAC 599
|||||||||||||||||||||||||| |||||||| |||||||||||||| |||||||||
Sbjct 538 GCAAAGATTGTTGAAGAGCATAGTAAACAGATAGCGAAGAAAGTTGAGAACGTAGTGAAC 597
Query 600 AATTTGAAGGAGTTCGAACATCTAGAGCATGCGCTATTGCGAAGTAAACAAGATGCCATC 659
|||||||| || ||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 598 AATTTGAAAGAATTCGAACCTCTAGAGCATGCGCTATTGCGAAGTAAACAAGATGCCATC 657
Query 660 TAAGCCAACTAT-TGATGTGTGCGGCTGTATATTCTTTGAATTGGTGAAGCTTTCCCGAT 718
|||||||| ||| | ||| |||||| |||||||||||| ||| ||| |||||||||||||
Sbjct 658 TAAGCCAATTATGT-ATGAGTGCGGATGTATATTCTTTCAATCGGTAAAGCTTTCCCGAT 716
Query 719 CGTAAATGGTTTAAGTGTAATCTAGATGTGGTTTGAATCTTATTT-T--ATGGAATGTAA 775
||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 717 CGTAAATGGTTTAAGTGTAATCTAGATGTGGTTTGAATCTTATTTGTTTATGGAATGTAA 776
Query 776 TGTGAGGAACTTTGTAACCATAGAGTAGAAGAGGACAT 813
|||||| |||||||||||||||||||||||||||||||
Sbjct 777 TGTGAGAAACTTTGTAACCATAGAGTAGAAGAGGACAT 814
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30422087766
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5