BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G43290.1
Length=996
Score E
Sequences producing significant alignments: (Bits) Value
Ahg935227 jgi|Araly1|935227|scaffold_403215.1 1306 0.0
> Ahg935227 jgi|Araly1|935227|scaffold_403215.1
Length=798
Score = 1306 bits (707), Expect = 0.0
Identities = 760/786 (97%), Gaps = 2/786 (0%)
Strand=Plus/Plus
Query 86 AACAGTTATGGTGAGAATATTCCTTCTCTACAATATACTAAATTCGTTTCTTCTCTCTTT 145
||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 14 AACAGTTATGGTGAGAATATTCCTTCTCTACAACATACTAAACTCGTTTCTTCTCTCTTT 73
Query 146 AGTACCAAAGAAGCTACGAACTCTTTTCCCTCTTTCTTGGTTCGACAAAACTCTCCACAA 205
||||||||||||||||| |||||| |||||||| ||||||||||||||||||||||||||
Sbjct 74 AGTACCAAAGAAGCTACAAACTCTCTTCCCTCTCTCTTGGTTCGACAAAACTCTCCACAA 133
Query 206 GAACTCACCACCGTCTCCGTCAACGATGTTACCTTCTCCATCATCTTCTTCAGCGCCGAC 265
||||||||||||||||||||| ||||||||||||||||| ||||| ||||| ||||||||
Sbjct 134 GAACTCACCACCGTCTCCGTCTACGATGTTACCTTCTCCGTCATCGTCTTCTGCGCCGAC 193
Query 266 GAAAAGAATAGATCCGTCCGAGCTCAAACGCGTTTTCCAGATGTTCGACAAGAACGGTGA 325
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 194 CAAAAGAATAGATCCGTCCGAGCTCAAACGCGTTTTCCAGATGTTCGACAAGAACGGTGA 253
Query 326 CGGTCGAATCACAAAGGAAGAGCTCAACGACTCGCTTGAGAATCTTGGAATCTACATACC 385
||||||||||||||||||||||||||||||||| || |||||||| ||||||||||||||
Sbjct 254 CGGTCGAATCACAAAGGAAGAGCTCAACGACTCACTAGAGAATCTAGGAATCTACATACC 313
Query 386 AGACAAAGATCTGACTCAAATGATCCACAAGATCGATGCTAACGGTGATGGATGCGTCGA 445
||||||||||||||||||||||||||| |||||||| || ||||||||||||||||||||
Sbjct 314 AGACAAAGATCTGACTCAAATGATCCATAAGATCGACGCAAACGGTGATGGATGCGTCGA 373
Query 446 CATAGACGAGTTTGAGTCGCTGTACAGCTCGATTGTGGATGAGCATCACAACGATGGCGA 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 374 CATAGACGAGTTTGAGTCGCTGTACAGCTCGATTGTGGATGAGCATCACAACGATGGCGA 433
Query 506 AACAGAGGAAGAGGATATGAAAGATGCGTTTAACGTGTTTGACCAAGACGGAGATGGGTT 565
|||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 434 AACAGAGGAAGAAGATATGAAAGACGCGTTTAACGTGTTTGACCAAGATGGAGATGGGTT 493
Query 566 TATCACTGTGGAGGAGTTGAAATCTGTGATGGCTTCCTTGGGACTCAAGCAAGGGAAGAC 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 494 TATCACTGTGGAGGAGTTGAAATCTGTGATGGCTTCCTTGGGACTCAAGCAAGGGAAAAC 553
Query 626 CCTAGATGGTTGTAAGAAGATGATTATGCAAGTTGATGCAGATGGTGATGGTAGAGTCAA 685
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 554 CCTAGATGGTTGCAAGAAGATGATTATGCAAGTTGATGCAGATGGTGATGGTAGAGTCAA 613
Query 686 TTACAAAGAGTTTCTTCAGATGATGAAAGGTGGTGGCTTTAGCAGCAGTAATTGATCTTT 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 614 TTACAAAGAGTTTCTTCAGATGATGAAAGGTGGTGGCTTTAGCAGCAGTAATTGATCTTT 673
Query 746 AACTAGGGTTTGATTTGACAGAAGAGAAGTGTGTTTATTCGATTGATTGGTTTGTTTTTC 805
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 674 AACTAGGGTTTGATTTGACAGAAGAGAAGTGTGTTTATTCGATTGATTGGTTTGTTTTTC 733
Query 806 TTGTTTTT-CCTCTGTAAATAAATTTTCTGATGACAAATCAAAACATCGTGTAATCGAGG 864
|||||||| ||||||||||||| || ||||||||| |||||||||||||||||||||| |
Sbjct 734 TTGTTTTTTCCTCTGTAAATAA-TTATCTGATGACGAATCAAAACATCGTGTAATCGAAG 792
Query 865 AAGGTG 870
||||||
Sbjct 793 AAGGTG 798
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37017352407
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5