BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G43310.1

Length=788
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg483437 jgi|Araly1|483437|fgenesh2_kg.4__2497__AT2G43310.1         640    0.0  


> Ahg483437 jgi|Araly1|483437|fgenesh2_kg.4__2497__AT2G43310.1
Length=587

 Score =  640 bits (346),  Expect = 0.0
 Identities = 447/494 (90%), Gaps = 13/494 (3%)
 Strand=Plus/Plus

Query  193  AACGACCCGAACAATGAACGGAACCCACCGTCATCATCTTCTTCAACTAGTCTTATCATG  252
            |||||| ||| | ||||| || || ||||||||||||||||||||||| |||||||||||
Sbjct  99   AACGACACGAGCGATGAATGGGACTCACCGTCATCATCTTCTTCAACTGGTCTTATCATG  158

Query  253  CCGTAAGATCACAGCTCAAGTGACTCAACCAGGATCCTCAACGATCATAGCAATGGCTTC  312
            ||| |||||||||||||||||||||||||||||||| || |||||| |||| ||||||||
Sbjct  159  CCGCAAGATCACAGCTCAAGTGACTCAACCAGGATCTTCCACGATCGTAGCCATGGCTTC  218

Query  313  ATCCTCCGAGCAAGAATTCCTAG-CAAAAAGCCGCGCCAATCTCTACCGATTCCCTCACT  371
            ||||||||| ||||||||||||| | |||||||||||||||||||||||||||||||| |
Sbjct  219  ATCCTCCGAACAAGAATTCCTAGTC-AAAAGCCGCGCCAATCTCTACCGATTCCCTCATT  277

Query  372  CCAACCATTTCTGGGACTCAAAGACCGCTTCACGCGTCGGCGAGAAGCTTGGGT-TACGT  430
            ||||| |||||||||||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct  278  CCAACAATTTCTGGGACTCAAAGACCGCTTCACGCGTCGGCGAGAAGCTT-GGTCTACGT  336

Query  431  -TTAAGAGAGCTTGGTGTTGACGTAGTCTCCATTGATGCAGACGAAGAAATCTCTCGGCC  489
             || ||||| || ||||||||||| ||||||||||||||||||||||| |||||||| ||
Sbjct  337  CTT-AGAGATCTCGGTGTTGACGTTGTCTCCATTGATGCAGACGAAGAGATCTCTCGACC  395

Query  490  TATTCACCATCGCAAAAGAGTTCTTCCGTTGTTCGATTCCGTTCGTCGTACCGGTATCAG  549
             ||||| || |||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct  396  CATTCAACACCGCAAAAGGGTTCTTCCGTTGTTTGATTCCGTTCGTCGTACCGGTATCAG  455

Query  550  AGTCGACGGAACTGAGCAATTGAACGATATTAGTGTCCCAATTATTCCCA-AAA--A-TT  605
            ||||||||||||||| ||||||||| ||||  ||||| || ||||||||| |||  | ||
Sbjct  456  AGTCGACGGAACTGACCAATTGAACAATATCGGTGTCACAGTTATTCCCAGAAATTAGTT  515

Query  606  AGGGTTACGAATTAGGGttttttttGTTTTGTTCGTACAGTTTCTTGTATTAGTGAGAGA  665
            ||||||||||||| ||| ||||||| ||  |||||||||||||||||||| |||||||||
Sbjct  516  AGGGTTACGAATTTGGGATTTTTTT-TT--GTTCGTACAGTTTCTTGTATCAGTGAGAGA  572

Query  666  TTTACAGAAACTAA  679
            ||||||||||||||
Sbjct  573  TTTACAGAAACTAA  586



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 29087785671


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5