BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G43320.1
Length=1591
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483439 jgi|Araly1|483439|fgenesh2_kg.4__2499__AT2G43320.1 1546 0.0
> Ahg483439 jgi|Araly1|483439|fgenesh2_kg.4__2499__AT2G43320.1
Length=1512
Score = 1546 bits (837), Expect = 0.0
Identities = 951/1004 (95%), Gaps = 15/1004 (1%)
Strand=Plus/Plus
Query 504 GGAAAAGTAAGTGTTGCTGATATCATTGGGCTCTCTGGGTCAGAAACTGCTCCTTTAAAA 563
|||||||||||||||||||||||||| ||||||||||| |||||||| ||| | |||||
Sbjct 513 GGAAAAGTAAGTGTTGCTGATATCATGGGGCTCTCTGGTTCAGAAACCGCT-C--TAAAA 569
Query 564 AATGAAGGTTCTTTGAAAAGTTGGGAAAGCTCTGTTGTTCTTGTTAATGTCCTTAAAAAC 623
|||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 570 AATGAAGGTTCTCTGAAAAGTTGGGAAAGCTCTATTGTTCTTGTTAATGTCCTTAAAAAC 629
Query 624 GAGATCCGTGATGGACAGCTTAGCTTCAGGGGCAAAAGGGTCCTCGAGCTAGGTTGCAAC 683
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 630 GAGATCCGTGATGGACAGCTTAGCTTCAGGGGCAAAAGGGTCCTCGAGCTAGGTTGCAA- 688
Query 684 TT-TGGAGTTCCTGGGATATTTGCCTGTTTGAAAGGTGCTTCCTCAGTCCACTTTCAAGA 742
|| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 689 TTACGGAGTTCCTGGGATATTTGCCTGCTTGAAAGGTGCTTCCTCAGTCCACTTTCAAGA 748
Query 743 CCTCAGCGCAGAAACGATAAGATGCACAACCATCCCAAACGTTCTTGCAAACCTGGAGCA 802
|||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 749 GCTCAGCGCAGAAACAATAAGATGCACAACCATCCCAAACGTTCTTGCAAACCTCGAGCA 808
Query 803 AGCACGAGACAGGCAAAGCCGTCAGCCAGAAAGCCCACTCACACCATCAAGACAAGCTAT 862
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 809 AGCACGAGACAGGCAAAGCCGTCAGCCAGAAAGCCCACTCACACCATCAAGACAAGCTAT 868
Query 863 CTCTGCATCTGTCCGTTTCTATGCAGGAGAATGGGAAGAGCTCTCTACCGTTCTATCCAT 922
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 869 CTCTGCATCTGTCCGTTTCTATGCAGGAGAATGGGAAGAGCTCTCAACCGTTCTATCCAT 928
Query 923 CATTAGAACAGATGTCCTTGAACCATCTATCCCCGCAATGAACTTGAGCTTTTCAGAGGA 982
||||||||||||||| |||||||| |||||||| |||||||||||||||||||||||||
Sbjct 929 CATTAGAACAGATGTTTTTGAACCAGCTATCCCCACAATGAACTTGAGCTTTTCAGAGGA 988
Query 983 AGATTTCATGGATGGATGTAGCAGCCAAGACGGAAGCATTACAGGACAGCCAGATTTCTC 1042
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 989 AGATTTCATGGATGGATGTAGCAGCCAAGACGGAAGCATTACAGGACAGCAAGATTTCTC 1048
Query 1043 CTCGAGGCGATCAAGGAAGCTCTCAGGAAGCAGAGCGTGGGAAAGAGCCAACGAGACTGG 1102
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1049 CTCAAGGCGATCAAGGAAGCTCTCAGGAAGCAGAGCGTGGGAAAGAGCCAACGAGACCGA 1108
Query 1103 TCAAGAAGGAGAATATGGATATGATGTTATACTAATGACCGAAATCCCTTACTCTATTAC 1162
||||| |||||||| ||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1109 TCAAGGAGGAGAATGTGGATATGATGTTATACTAATGACCGAAATCCCTTACTCGGTTAC 1168
Query 1163 TTCTCTGAAGAAACTATATTCTCTCATAAAGAAGTGCCTGAGACCGCCATACGGTGTAAT 1222
||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1169 TTCTCTGAAAAAACTATATTCTCTCATAAAGAAGTGCCTGAGACCGCCATATGGTGTAAT 1228
Query 1223 GTATTTGGCGGCGAAGAAGCAATACGTAGGATTCAACAGTGGAGCGAAACATTTGAGGAA 1282
||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 1229 GTATTTGGCGGCGAAGAAGCAGTACGTAGGATTCAACAGTGGAGCAAAACATTTGAGGAA 1288
Query 1283 CTTGGTGGATGAAGAAACTATCTTAGGAGCTCATTTGGTGAAGGAAACTACAGACAGAGA 1342
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 1289 CTTGGTGGATGAAGAAACTATCTTAGGAGCTCATTTGGTTAAGGAGACTACAGACAGAGA 1348
Query 1343 TATTTGGAAGTTCTTCCTCAAGTAGGTGTGTAGAAGAA-GAACTCA-TTCATAACCAAAT 1400
||||||||||||||||||||||||| |||||||||||| ||||||| |||||||||||||
Sbjct 1349 TATTTGGAAGTTCTTCCTCAAGTAGCTGTGTAGAAGAAAGAACTCAATTCATAACCAAAT 1408
Query 1401 ACATTCTGCAGCCAACAACAT-A-A-GCTaaaaaaaGATGTCAAATACAAAACTTTTT-T 1456
| |||||||||||||||||| | | | | |||||||||||||||||||||||| ||| |
Sbjct 1409 ATATTCTGCAGCCAACAACAACAGAAGTTGAAAAAAGATGTCAAATACAAAACTCTTTCT 1468
Query 1457 GCGTAA-TGTAGTAT--T-GCAATGCAATGATGAAATTGAAGTT 1496
| ||| |||||||| | | |||||||||||||||||||||||
Sbjct 1469 CCTTAAATGTAGTATAGTAGTAATGCAATGATGAAATTGAAGTT 1512
Score = 580 bits (314), Expect = 8e-165
Identities = 441/496 (89%), Gaps = 34/496 (7%)
Strand=Plus/Plus
Query 26 ttgctctttcctttttagaatttttctttcttttt------aaaaa-ca-tttcttttat 77
||||||||||||||||||||||||||||||||||| ||||| | |||||| |||
Sbjct 1 TTGCTCTTTCCTTTTTAGAATTTTTCTTTCTTTTTAAAAAAAAAAATTATTTTCTTATAT 60
Query 78 ttcttcttactttaaaaCGTGTGAGAGATCGCTTTGCTCCGAAATTTCAACCCCTGGTTG 137
|||||| |||||| ||||||||||||||||||||||||| ||||||||||||||| ||||
Sbjct 61 TTCTTC-TACTTT-AAACGTGTGAGAGATCGCTTTGCTCTGAAATTTCAACCCCTTGTTG 118
Query 138 CTTTGTTTGATCCCTAGATTTTCGCCGTG-TT-A-TAGAAGAATCTCAT-TTTTTGCCGT 193
|| | |||||||||||||||||||||||| || | ||||||||||||| ||||||||||
Sbjct 119 CTGTATTTGATCCCTAGATTTTCGCCGTGTTTGAGAAGAAGAATCTCATCTTTTTGCCGT 178
Query 194 CTGAATCGAAATTTCGTGTCGAGAACTCCTCCACTCCTCCACTTCTCGTTTTCTCTTTTT 253
|||||||| |||||||||||||||| || || ||| ||||||| |||||||||||
Sbjct 179 CTGAATCG-AATTTCGTGTCGAGAA---CT---CT--TCCGCTTCTCGCTTTCTCTTTTT 229
Query 254 A-ATTTATTTTACTCTATTGTGACCATTTTGAGCGTTAT----TGAGAACTCAAAGCTCA 308
| || | |||| || ||| | | | || ||||||||| ||||||||| |||| |
Sbjct 230 ATATCT-TTTTGCT-AATT-TTA-GA-TTGGAGCGTTATCGAGAGAGAACTCAGAGCTAA 284
Query 309 AGAATGCGTGCACCATCTTTGCTTGCACAATGCTTGCCGGGTTTGCTGCCTCAAGACCGA 368
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 285 AGAATGCGTGCACCATCTTTGCTTGCACAATGCTTGCCGGGTTTGCTACCTCAAGACCGA 344
Query 369 GGCGGTGTGTCTGCATTATCAGAGAAGGATTTGCAGCTTCCAACACCAGCTGTTGAGATC 428
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 345 GGCGGTGTGTCTGCATTATCAGAGAAGGATTTGCAGCTTCCAACACCAGCTGTTGAGATC 404
Query 429 ATACCTTCTAAGACAGTAGCTCATCACAGGTATTCAGGGGAGAATCTAGATGC-GCTCGG 487
|||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 405 ATACCTTCTAAGACAGCAGCTCATCACAGGTATTCAGGGGAGAATCTAGATGATGCTCGG 464
Query 488 TTTACAAGTTTTCAAG 503
||||||||||||||||
Sbjct 465 TTTACAAGTTTTCAAG 480
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59611233425
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5