BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G43340.1
Length=891
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483441 jgi|Araly1|483441|fgenesh2_kg.4__2501__AT2G43340.1 1199 0.0
> Ahg483441 jgi|Araly1|483441|fgenesh2_kg.4__2501__AT2G43340.1
Length=847
Score = 1199 bits (649), Expect = 0.0
Identities = 806/875 (92%), Gaps = 37/875 (4%)
Strand=Plus/Plus
Query 26 TAATTACCACTTTCTTCTCCATATACaaaaaaaaCAGAGAACTCACAATGTGCGATTCAG 85
|||||||||||||||||||| |||| |||||||||| ||||||||||||||||||||
Sbjct 1 TAATTACCACTTTCTTCTCC--ATAC---AAAAACAGAGTACTCACAATGTGCGATTCAG 55
Query 86 ATTTTCTCTCTCGTTGCTCTTCCTACGAAGCAGACGTTGATTCCGACAGCGAGATCTCGA 145
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 56 ATTTTCTCTCTCGTTGCTCTTCCTACGAAGCAGACGTTGATTCCGACAGCGAGATCTCTA 115
Query 146 CCTCCAGTTTCAGTTCTTGTTCGTACAGTGAATCTGAGGAAGAAGAGATCAACAATGGTT 205
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 116 CCTCCAGTTTCAGTTCTTGTTCGTACAGTGAATCTGAGGAAGAAGAGATCGACAATGGTT 175
Query 206 TTGGTGTTGTTCAGTCGAAGAAGCAAACGAAGAAACTGGAGAAGAAGAAGAGTAATGTGT 265
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 176 TTGGTGTTGTTGAGTCGAAGAAGCAAACGAAGAAACTGGAGAAGAAGAAGAGTAATGTGT 235
Query 266 TGTTAGAAGGTTACGTTGTAGATTCAG-CTGTGAATGATGATTTGAAGAGAACCAAGAGT 324
||||||||||||| || || ||||||| | ||||||||||||||||||||||||||||||
Sbjct 236 TGTTAGAAGGTTATGTAGTTGATTCAGGC-GTGAATGATGATTTGAAGAGAACCAAGAGT 294
Query 325 TTAACGGACGATGATCTCGAGGAGCTTAAGGGATGTGTAGATCTAGGGTTTGGGTTT-AA 383
||||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||| ||
Sbjct 295 TTAACGGACGATGATCTCGAGGAGCTTAAAGGATGTGTAGATCTAGGATTTGG-TTTCAA 353
Query 384 TTACGAGGAGATTCCTGAACTTTGTAATACTTTACCAGCTCTTGAGCTCTGTTACTCGAT 443
|||||||||||||||||| |||||||||||||| |||||||||||||| |||||||| ||
Sbjct 354 TTACGAGGAGATTCCTGAGCTTTGTAATACTTTGCCAGCTCTTGAGCTTTGTTACTCTAT 413
Query 444 GAGTCAGAAGTTTATTGATCA--A-GATCATCATCAC-CAT-T-CTTCTTCTTCGCCAGA 497
||||||||||||||||||||| | ||||||||||| | | | |||||||||| || ||
Sbjct 414 GAGTCAGAAGTTTATTGATCATCAAGATCATCATCATTCTTCTTCTTCTTCTTCCCCGGA 473
Query 498 GAAGAAATCATCGGTTCTTGATTCTCCTGTTAGTCCTATTGCTAGCTGGAAGATCTCTAG 557
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 474 GAAGAAATCGTCGGTTCTTGATTCTCCTGTTAGTCCTATTGCTAGCTGGAAGATCTCTAG 533
Query 558 TCCTGGTGATAATCCTGATGATGTTAAAGCAAGGTTGAAATTTTGGGCACAAGCTGTGGC 617
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 534 TCCTGGTGATAATCCTGATGAGGTTAAAGCAAGGTTGAAATTTTGGGCACAAGCTGTGGC 593
Query 618 ATGTACTGTGAGGTTATGTACTTGAAGATGAGATTTGGATTTGATCAACCAAAAGCTGAG 677
|||||||||||| ||||| ||||||| | ||||||||||||||||||| | |||| ||||
Sbjct 594 ATGTACTGTGAGATTATGCACTTGAACAAGAGATTTGGATTTGATCAATCGAAAGTTGAG 653
Query 678 GAATCAATGGAGGAGGAAGAAGATGGTGAAACCAGACAATTTGCAGGAGTGAAATCTCTT 737
||| |||||||||| | |||| | | | |||||||||||||||||||||
Sbjct 654 GAACCAATGGAGGA--AC-AAGA--------C-A-A---TTTGCAGGAGTGAAATCTCTT 697
Query 738 ATGAGACTGACCTGCTTGAAAACAACCATTGTTGTAGAGCTCTTTGCTCACACTGTATGT 797
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 698 ATGAGACTGACCTGCTTGAAAACACCCATTGTTGTAGAGCTCTTTGCTCACACTGTAT-- 755
Query 798 ATAAAAAGATTAATGATCTAAG-AAGATTTTGCTAGGACATTGTTGTAATGGATGATTAA 856
| |||| ||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 756 A-AAAA-GATTAATGATC-AACTAAGATTTTGCTAGGACATTGTTGTAATGGATGATTAA 812
Query 857 TAAGAGAGAAATAAATAAAACTTTGTTCTTTATTG 891
|||||| ||||| ||||||||||||||||||||||
Sbjct 813 TAAGAGGGAAATGAATAAAACTTTGTTCTTTATTG 847
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33014446122
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5