BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G43350.1
Length=905
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483442 jgi|Araly1|483442|fgenesh2_kg.4__2502__AT2G43350.1 1356 0.0
> Ahg483442 jgi|Araly1|483442|fgenesh2_kg.4__2502__AT2G43350.1
Length=887
Score = 1356 bits (734), Expect = 0.0
Identities = 848/901 (94%), Gaps = 16/901 (2%)
Strand=Plus/Plus
Query 5 TTCTGAGATCGTCTTGTTCACCAAAGAGAAGAAGACTAACTGTGttttttttttCTTTCC 64
|||||||||||||||||||| | || || ||||| | | |||||||||| |||||
Sbjct 1 TTCTGAGATCGTCTTGTTCATC-AA-AG-AGAAG----A---T-TTTTTTTTTT-TTTCC 48
Query 65 TCGATGCCTAGATCAAGCAGATGGGTCAATCAGCGAGCTACCTCTAAGATTAAAAAATTT 124
|||||||||||||||||||||||||||||||| | |||||||||||||| |||||||||
Sbjct 49 TCGATGCCTAGATCAAGCAGATGGGTCAATCATCCAGCTACCTCTAAGACTAAAAAATTA 108
Query 125 ATACTCTTTTTGGGTGTAGCCTTTGTCTTCTACCTCTACAGATACCCTTCTTCGCCATCG 184
|| ||||| ||| ||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 109 ATTCTCTTCTTGCTTGTAGCCTTCGTCTTCTACCTCTACAGATACCCTTCTTCTCCATCC 168
Query 185 ACGGTGGAACAATCATCCACTTCCATCTACAACATTTCCGTTAAGGATATTGAAGGGAAA 244
|| |||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||
Sbjct 169 ACAGTGGAACAATCATCCAGTTCCATCTACAACATTTCCGTTAAGGACATTGAAGGGAAA 228
Query 245 GATGTGAGTTTGAGCAAGTTTACCGGGAAAGTGCTTCTTATAGTCAATGTAGCCTCTAAG 304
||||| |||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 229 GATGTAAGTTTGAGCAAGTTCACCGGAAAAGTGCTTCTTATAGTCAATGTAGCCTCTAAG 288
Query 305 TGTGGTCTAACACATGGAAACTACAAAGAAATGAACATTCTGTATGCCAAGTACAAAACT 364
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 289 TGTGGTCTAACACATGGAAACTACAAAGAAATGAACATTTTGTATGCCAAGTACAAAACT 348
Query 365 CAGGGGTTTGAGATCTTAGCATTTCCTTGCAACCAATTTGGTAGTCAAGAGCCAGGCAGC 424
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 349 CAGGGGTTTGAGATCTTAGCATTTCCTTGCAACCAATTTGGTAGTCAAGAGCCAGGTAGC 408
Query 425 AACATGGAGATCAAGGAAACCGTTTGCAATATCTTCAAAGCAGAATTCCCAATCTTTGAC 484
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 409 AACAAGGAGATCAAGGAAACCGTTTGCAATATCTTCAAAGCAGAATTCCCAATCTTTGAC 468
Query 485 AAGATTGAAGTAAATGGAAAGAACACTTGTCCCCTTTACAATTTCTTAAAAGAACAAAAA 544
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 469 AAGATTGAAGTAAATGGAAAGAACACTTGTCCCCTTTACAACTTCTTAAAAGAACAAAAA 528
Query 545 GGAGGATTGTTTGGGGATGCTATTAAGTGGAATTTCGCAAAGTTTCTGGTAGACAGACAA 604
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 529 GGAGGATTGTTTGGGGATGCTATTAAGTGGAATTTCGCTAAGTTTCTGGTAGACAGACAA 588
Query 605 GGAAATGTCGTTGACCGATATGCTCCAACTACATCACCTCTTGAAATTGAGAAGGATATC 664
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 589 GGAAATGTCGTGGACCGATATGCTCCAACTACATCACCTCTTGAAATTGAGAAGGACATC 648
Query 665 GTCAAGCTATTGGCATCTGCTTGAACATATATGTCAAAGGACAGGAGAGCAAAAAGCATC 724
|| |||||||||||||||||||||||||| | || |||||||||||||||||| |||||
Sbjct 649 GTGAAGCTATTGGCATCTGCTTGAACATAAAAGTTAAAGGACAGGAGAGCAAAC-GCATC 707
Query 725 GCATCAAACATGTCTGAGACTGAGAATGAAAACCACTTTCTATACTTATTCTTTACCTTT 784
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 708 GCATCAAACATGTCTGAGACTGAGAATGAAAACCACTTTCTATACTTATTCTTTACATGT 767
Query 785 CATGTTTATCCAAAACCATCCATGGAAAAGAAGATGCTTGTCTGAATCTGTGAACCTCAT 844
||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 768 -ATGTTTATCTAAAACCATCCTTGGAAAAGAAGATGCTTGTCTGAATCTGTGAACCTCAT 826
Query 845 TTTCTGTAACAAAACCCCAA-AAAT-GCTTATGAAACATCAATAAAGAACAAAGTTTTAT 902
|||||||||||| ||||| | |||| |||||||||| |||||||||||||||||||||||
Sbjct 827 TTTCTGTAACAAGACCCCCACAAATTGCTTATGAAATATCAATAAAGAACAAAGTTTTAT 886
Query 903 T 903
|
Sbjct 887 T 887
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33548166960
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5