BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G43360.1
Length=1413
Score E
Sequences producing significant alignments: (Bits) Value
Ahg935233 jgi|Araly1|935233|scaffold_403221.1 1847 0.0
Ahg342373 jgi|Araly1|342373|fgenesh1_pg.C_scaffold_3002136 558 3e-158
Ahg902342 jgi|Araly1|902342|Al_scaffold_0004_2992 470 2e-131
> Ahg935233 jgi|Araly1|935233|scaffold_403221.1
Length=1178
Score = 1847 bits (1000), Expect = 0.0
Identities = 1120/1178 (95%), Gaps = 8/1178 (1%)
Strand=Plus/Plus
Query 93 TCTGA-TTAGCAGATCAAATGATGCTTGTTCGATCTGTATTTCGATCTCAGTTGCGACCC 151
||||| || ||||||||||||||||||||||| || || |||||||||||| || |||||
Sbjct 5 TCTGATTTTGCAGATCAAATGATGCTTGTTCGGTCGGTGTTTCGATCTCAGATGAGACCC 64
Query 152 TCTGTCTCGGGTGGTCTGCAATCTGCTTCTTGCTATTCTTCATTATCTGCTGCTTCAGCT 211
|||||||| ||||||||||||| |||||||||||||||||| ||||||||||||||||
Sbjct 65 TCTGTCTCTGGTGGTCTGCAATTTGCTTCTTGCTATTCTTC---ATCTGCTGCTTCAGCT 121
Query 212 GAAGCTGAGAGGACTATCAGAGAAGGTCCCAGAAACGATTGGAGTAGAGATGAAATCAAG 271
|||||||| |||||||||||||||||||||||||| |||||||||| |||||||||||||
Sbjct 122 GAAGCTGAAAGGACTATCAGAGAAGGTCCCAGAAATGATTGGAGTAAAGATGAAATCAAG 181
Query 272 TCTGTTTATGATTCTCCTCTTCTTGACCTCCTCTTCCATGGAGCTCAGGTTCATAGACAT 331
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 182 TCTGTTTATGATTCTCCTGTTCTTGACCTCCTCTTCCATGGAGCTCAGGTTCATAGACAT 241
Query 332 GTTCATAACTTCAGGGAGGTACAACAATGTACCCTCCTCTCCATAAAGACTGGTGGCTGT 391
|||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 242 GTTCATAACTTCAGGGAGGTACAACAATGTACTCTCCTCTCTATAAAGACTGGTGGCTGC 301
Query 392 AGTGAAGACTGTTCATATTGTCCTCAGTCTTCGAGATATAGCACTGGAGTTAAGGCACAA 451
|||||||||||||||||||||||||| || |||||||||||||||||||||||||| |||
Sbjct 302 AGTGAAGACTGTTCATATTGTCCTCAATCCTCGAGATATAGCACTGGAGTTAAGGCCCAA 361
Query 452 AGACTCATGTCTAAGGACGCTGTCATTGATGCTGCTAAGAAGGCAAAAGAAGCTGGGAGC 511
||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 362 AGACTCATGTCCAAGGACGCTGTCATTGATGCTGCAAAGAAGGCAAAAGAAGCTGGGAGC 421
Query 512 ACACGTTTTTGCATGGGTGCTGCTTGGCGAGATACAATTGGACGGAAAACCAACTTCAGC 571
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
Sbjct 422 ACACGTTTTTGCATGGGTGCTGCATGGCGAGATACAATTGGACGGAAAACCAACTTCAAC 481
Query 572 CAGATTCTTGAATACATCAAAGAAATAAGAGGCATGGGGATGGAAGTTTGCTGCACCTTA 631
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 482 CAGATTCTTGAATACATCAAAGAAATAAGAGGCATGGGGATGGAAGTTTGCTGCACCTTG 541
Query 632 GGCATGATTGAGAAACAACAAGCACTAGAGCTAAAGAAGGCTGGCCTCACTGCTTATAAC 691
|||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||
Sbjct 542 GGCATGATTGAGAAACAACAAGCACTAGAGCTAAAGAAAGCTGGACTCACTGCCTATAAC 601
Query 692 CACAATCTTGATACTTCAAGAGAGTACTACCCAAACGTCATCACTACTAGAAGTTATGAC 751
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 602 CACAATCTTGATACTTCAAGAGAGTACTACCCAAACGTCATCACTACTAGAAGTTATGAC 661
Query 752 GATCGCCTTGAAACTCTT-AGCCATGTTCGTGATGCTGGAATCAACGTTTGTTCAGGAGG 810
|| ||||||||||||||| ||| |||||||||| ||||||||||||||||||||||||||
Sbjct 662 GACCGCCTTGAAACTCTTGAGC-ATGTTCGTGAAGCTGGAATCAACGTTTGTTCAGGAGG 720
Query 811 AATCATAGGGCTTGGTGAGGCAGAGGAAGACAGAATAGGTTTATTACACACGCTGGCAAC 870
||||||||||||||| |||||||||||||||||| ||||| |||||||||| || |||||
Sbjct 721 AATCATAGGGCTTGGAGAGGCAGAGGAAGACAGAGTAGGTCTATTACACACACTAGCAAC 780
Query 871 ACTTCCT-TCTCACCCTGAGAGTGTTCCCATTAATGCTCTACTTGCAGTGAAAGGCACTC 929
|| |||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 ACCTCCTATG-CACCCTGAGAGTGTTCCCATTAATGCTCTACTTGCAGTGAAAGGCACTC 839
Query 930 CTCTTGAAGACCAGAAGCCAGTTGAGATATGGGAGATGATCAGGATGATTGGAACCGCAC 989
|||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 840 CTCTCGAAGACCAGAAGCCGGTTGAGATATGGGAGATGATCAGGATGATCGGAACCGCAC 899
Query 990 GTATTGTAATGCCAAAAGCGATGGTGAGACTGTCTGCTGGTAGAGTCCGGTTCTCAATGT 1049
||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||
Sbjct 900 GTATTGTAATGCCAAAAGCAATGGTGAGATTGTCTGCTGGTAGAGTCCGGTTCTCAATGG 959
Query 1050 CCGAACAAGCTCTCTGTTTCCTTGCTGGTGCAAACTCTATCTTCACCGGAGAGAAGCTTT 1109
|||| ||||| || |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 960 CCGAGCAAGCCCTTTGTTTCCTTGCTGGTGCAAACTCTATCTTCACAGGAGAGAAGCTTT 1019
Query 1110 TAACCACACCAAACAATGATTTTGACGCTGACCAGCTCATGTTCAAGACATTAGGCCTCA 1169
||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 1020 TAACCACACCAAACAATGATTTTGATGCCGACCAGCTCATGTTCAAGACATTAGGCCTCG 1079
Query 1170 TTCCTAAACCGCCAAGTTTCTCTGAAGATGATTCTGAATCAGAAAACTGCGAGAAAGTTG 1229
|||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||
Sbjct 1080 TTCCTAAACCGCCAAGTTTCTCTGAAGATGATTCTGAAGCAGAAAACTGCGACAAAGTTG 1139
Query 1230 CTTCCGCTTCTCACTAATATCATTATCCACtttttttt 1267
||||||||||||||||||||||||||||||||||||||
Sbjct 1140 CTTCCGCTTCTCACTAATATCATTATCCACTTTTTTTT 1177
> Ahg342373 jgi|Araly1|342373|fgenesh1_pg.C_scaffold_3002136
Length=405
Score = 558 bits (302), Expect = 3e-158
Identities = 337/354 (95%), Gaps = 2/354 (1%)
Strand=Plus/Plus
Query 605 ATGGGGATGGAAGTTTGCTGCACCTTAGGCATGATTGAGAAACAACAAGCACTAGAGCTA 664
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1 ATGGGGATGGAAGTTTGCTGCACCTTGGGCATGATTGAGAAACAACAAGCACTAGAGCTA 60
Query 665 AAGAAGGCTGGCCTCACTGCTTATAACCACAATCTTGATACTTCAAGAGAGTACTACCCA 724
||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 61 AAGAAAGCTGGACTCACTGCCTATAACCACAATCTTGATACTTCAAGAGAGTACTACCCA 120
Query 725 AACGTCATCACTACTAGAAGTTATGACGATCGCCTTGAAACTCTT-AGCCATGTTCGTGA 783
||||||||||||||||||||||||||||| ||||||||||||||| ||| ||||||||||
Sbjct 121 AACGTCATCACTACTAGAAGTTATGACGAACGCCTTGAAACTCTTGAGC-ATGTTCGTGA 179
Query 784 TGCTGGAATCAACGTTTGTTCAGGAGGAATCATAGGGCTTGGTGAGGCAGAGGAAGACAG 843
||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 180 AGCTGGAATCAACGTTTGTTCAGGAGGAATCATAGGGCTTGGAGAGGCTGAGGAAGACAG 239
Query 844 AATAGGTTTATTACACACGCTGGCAACACTTCCTTCTCACCCTGAGAGTGTTCCCATTAA 903
| |||||||| ||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 240 AGTAGGTTTACTACACACACTAGCAACACTTCCTTCTCACCCTGAGAGTGTTCCCATTAA 299
Query 904 TGCTCTACTTGCAGTGAAAGGCACTCCTCTTGAAGACCAGAAGCCAGTTGAGAT 957
||||||||||||||||||||||||| |||| |||||||||||||| ||||||||
Sbjct 300 TGCTCTACTTGCAGTGAAAGGCACTTCTCTCGAAGACCAGAAGCCGGTTGAGAT 353
> Ahg902342 jgi|Araly1|902342|Al_scaffold_0004_2992
Length=660
Score = 470 bits (254), Expect = 2e-131
Identities = 303/326 (93%), Gaps = 6/326 (2%)
Strand=Plus/Plus
Query 973 GATGA-TTGGAACCGCACGTATTGTAATGCCAAAAGCGATGGTGAGACTGTCTGCTGGTA 1031
||||| |||||||||||| ||||||||||||||| || ||||||||| | ||||||||||
Sbjct 324 GATGATTTGGAACCGCACTTATTGTAATGCCAAAGGCAATGGTGAGATTATCTGCTGGTA 383
Query 1032 GAGTCCGGTTCTCAATGTCCGAACAAGCTCTCTGTTTCCTTGCTGGTGCAAACTCTATCT 1091
||||||||||||||||| | || || || || ||||||||||||||||||||||||||||
Sbjct 384 GAGTCCGGTTCTCAATGGCGGAGCAGGCCCTGTGTTTCCTTGCTGGTGCAAACTCTATCT 443
Query 1092 TCACCGGAGAGAAGCTTTTAACCACACCAAACAATGATTTTGACGCTGACCAGCTCATGT 1151
|||||||||||||||||||||||||||||| ||||| |||||| |||||||||||||||
Sbjct 444 TCACCGGAGAGAAGCTTTTAACCACACCAA-CAATGTTTTTGATTCTGACCAGCTCATGT 502
Query 1152 TCAAGACATTAGGCCTCATTCCTAAACCGCCAAGTTTCTCTGAAGATGATTCTGAATCAG 1211
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 503 CCAAGACATTAGGCATCATTCCTAAACCGCCAAGTTTCTCTGAAGATGATTCTGAATCAG 562
Query 1212 AAAA-CTGCGAGAAAGTTGCTTCCGCTTCTCACTAATATCATTATCCACttttttttttt 1270
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 563 AAAAACTGCGAGAAAGTTGCTTCCGCTTCTCACTAATATCATTATCCACTTTTTTTT--- 619
Query 1271 GTTTGGAGTCGGGACACTATAGAGCA 1296
||||||||||||||||||||| ||||
Sbjct 620 GTTTGGAGTCGGGACACTATAAAGCA 645
Score = 449 bits (243), Expect = 2e-125
Identities = 285/306 (93%), Gaps = 0/306 (0%)
Strand=Plus/Plus
Query 611 ATGGAAGTTTGCTGCACCTTAGGCATGATTGAGAAACAACAAGCACTAGAGCTAAAGAAG 670
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGAAGTTTGCTGCACCTTGGGCATGATTGAGAAACAACAAGCACTAGAGCTAAAGAAA 60
Query 671 GCTGGCCTCACTGCTTATAACCACAATCTTGATACTTCAAGAGAGTACTACCCAAACGTC 730
||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GCTGGATTCACTGCCTATAACCACAATCTTGATACTTCAAGAGAGTACTACCCAAACGTC 120
Query 731 ATCACTACTAGAAGTTATGACGATCGCCTTGAAACTCTTAGCCATGTTCGTGATGCTGGA 790
||||||||||||||||||||| | ||| ||||||||||| | ||||||||||| ||||||
Sbjct 121 ATCACTACTAGAAGTTATGACAACCGCTTTGAAACTCTTGGGCATGTTCGTGAAGCTGGA 180
Query 791 ATCAACGTTTGTTCAGGAGGAATCATAGGGCTTGGTGAGGCAGAGGAAGACAGAATAGGT 850
||||| || |||||||| ||||||||||||||||| |||||||||||||||||| |||||
Sbjct 181 ATCAATGTCTGTTCAGGTGGAATCATAGGGCTTGGAGAGGCAGAGGAAGACAGAGTAGGT 240
Query 851 TTATTACACACGCTGGCAACACTTCCTTCTCACCCTGAGAGTGTTCCCATTAATGCTCTA 910
||||||||||| || ||||||| |||| |||||||||||||||||||||||||||||||
Sbjct 241 TTATTACACACACTAGCAACACCTCCTGCTCACCCTGAGAGTGTTCCCATTAATGCTCTG 300
Query 911 CTTGCA 916
||||||
Sbjct 301 CTTGCA 306
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52831169815
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5