BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G43370.1
Length=1141
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483444 jgi|Araly1|483444|fgenesh2_kg.4__2504__AT2G43370.1 1598 0.0
> Ahg483444 jgi|Araly1|483444|fgenesh2_kg.4__2504__AT2G43370.1
Length=1060
Score = 1598 bits (865), Expect = 0.0
Identities = 998/1062 (94%), Gaps = 9/1062 (1%)
Strand=Plus/Plus
Query 3 TCTTTATTTCCTTAAACAGCCGGAGCCGCCGTgagagagagagagTCGGGGGAGAAGAAA 62
|||||||||||||||| |||||||||||||||||||| |||| | |||| ||||||||
Sbjct 1 TCTTTATTTCCTTAAATAGCCGGAGCCGCCGTGAGAGTGAGA-A--AGGGGTAGAAGAAA 57
Query 63 TGAGCGGCGGAGGAAACAACGTCGTGAACAAAGTGTTCTACGCGACGTCGTATCATCCGA 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 58 TGAGCGGCGGAGGAAACAACGTCGTGAACAAAGTGTTCTACGCGACGTCGTATCATCCGA 117
Query 123 TTCAAGCCGGAAGTATCGACGGAACTGATGTTGCTCCACATGATAACGGCGTCCGTCGAG 182
|||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 118 TTCAAGCCGGAAGTATCGACGGAACTGACGTTGCTCCACATGATAACGGCGTACGTCGAG 177
Query 183 CTCTTCTCTGTTATAACGCTGGCTTATATGATCCTTCTGGTGATTCGAAGGCTGTTGGAG 242
||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 178 CTCTTCTTTGTTATAACGCCGGCTTATATGATCCTTCTGGTGATTCGAAGGCTGTTGGAG 237
Query 243 ATCCTTACTGTACTCTCTTCGTGGGTCGTCTCTCTCATCACACTACGGAGGATAC-ACTT 301
|| ||||||||||||||||||||||||||||||||||||| ||||| || ||||| | ||
Sbjct 238 ATTCTTACTGTACTCTCTTCGTGGGTCGTCTCTCTCATCATACTACTGAAGATACTA-TT 296
Query 302 CGAGAGGTGATGAGTAAGTATGGCAGGATTAAGAACTTGCGCTTGGTAAGACACATTGTG 361
||||||||||||| |||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 297 CGAGAGGTGATGACTAAGTATGGCAGGATTAAAAACTTGCGCTTGGTTAGACACATTGTG 356
Query 362 ACGGGAGCTTCACGAGGATATGGTTTTGTGGAGTATGAGACTGAAAAGGAGATGCTTCGT 421
||||||||||||||||| |||| ||||||||||||||||||||||| |||||||||||||
Sbjct 357 ACGGGAGCTTCACGAGGGTATGCTTTTGTGGAGTATGAGACTGAAAGGGAGATGCTTCGT 416
Query 422 GCTTATGAGGATGCTCATCATTCACTAATAGATGGGCGAGAGATTATTGTTGATTATAAT 481
||||||||||||||||||||||| |||| ||||| || ||| ||||||||||||| |||
Sbjct 417 GCTTATGAGGATGCTCATCATTCTTTAATCGATGGTCGGGAGGTTATTGTTGATTACAAT 476
Query 482 AGACAGCAATTGATGCCTGGATGGATACCAAGAAGACTAGGAGGTGGCCTTGGTGGTAGG 541
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 477 CGACAGCAATTGATGCCTGGATGGATACCAAGAAGACTAGGAGGTGGGCTTGGTGGTAGG 536
Query 542 AAAGAATCCGGACAACTTCGCTTTGGAGGACGAGATAGACCATTCCGTGCTCCCTTACGA 601
|||||||| |||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 537 AAAGAATCTGGACAACTTCGCTTTGGAGGACGAGAAAGACCATTCCGTGCTCCCTTGCGA 596
Query 602 CCAATCCCTCATGAAGATTTGAAAAAGCTCGGTATTCAGCTTCCGCCTGAGGGAAGATAT 661
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 597 CCAATCCCTCATGAAGATTTGAAAAAGCTCGGTATTCAGCTTCCGCCTGAGGGAAGATAT 656
Query 662 ATGTCGCGCACACAGATCCCATCACCTCCAAGGAGAAAAGGAAGTGTGTCGGATAGAGAG 721
||||||||||||||||||||||||||||| ||||||||||||| ||||| ||||||||||
Sbjct 657 ATGTCGCGCACACAGATCCCATCACCTCCTAGGAGAAAAGGAAATGTGTTGGATAGAGAG 716
Query 722 GAAGAATATTATCGGGAAAAGAGTTCTGTAGAACGGGAAGAAGAGTTTAAAGAGCGAAGC 781
|||| |||||||||||||||||||||||||||| |||| |||||||||||||||||||||
Sbjct 717 GAAGGATATTATCGGGAAAAGAGTTCTGTAGAAAGGGATGAAGAGTTTAAAGAGCGAAGC 776
Query 782 AGCCTTAGGTCATATCACAGTCACAGGTCGAGCGcacacacacacaGTTCTCATAGAAGA 841
||||||||||| ||||||||||||||| ||||| ||||||||||||| || |||||||||
Sbjct 777 AGCCTTAGGTCTTATCACAGTCACAGGACGAGCTCACACACACACAGCTCCCATAGAAGA 836
Query 842 CGCAGCAAAGACAGAGAGGAGTGTTCCAGGGA-AGAGTCCCGTTCTGATAGAAAAGAGAG 900
||||||||||||||||| ||| |||||||| | |||||| ||||||||||||||||||||
Sbjct 837 CGCAGCAAAGACAGAGACGAGCGTTCCAGG-ACAGAGTCTCGTTCTGATAGAAAAGAGAG 895
Query 901 AGCACGAGGTATGGAAGATCGATATGGTGACAACAAGGGTGAAGTTTCTGGCAGCAAAAG 960
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 896 ATCACGAGGTATGGAAGATCGATATGGTGACAACAAGGGTGAAGTTTCTGGCAGCAAAAG 955
Query 961 ATCAAAACGTTCT-GAAGAAGACCGATCTCGCAAACGTCATAAACACTTGCCTTCCCATC 1019
|||||||| | || ||||||||||| |||| ||||||||||||| || ||| ||||||||
Sbjct 956 ATCAAAACAT-CTTGAAGAAGACCGTTCTCACAAACGTCATAAATACATGCATTCCCATC 1014
Query 1020 ATCATAGGAGGTCCTATAGTCAAGATCATCATTCTTCCGACT 1061
|||||||||| |||| |||||||||||| |||||||| ||||
Sbjct 1015 ATCATAGGAGATCCTCTAGTCAAGATCAACATTCTTCTGACT 1056
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42545175372
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5