BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G43375.1

Length=1576
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg902344 jgi|Araly1|902344|Al_scaffold_0004_2994                    169    7e-41
  Ahg483451 jgi|Araly1|483451|fgenesh2_kg.4__2511__AT2G43410.3         150    3e-35


> Ahg902344 jgi|Araly1|902344|Al_scaffold_0004_2994
Length=906

 Score =  169 bits (91),  Expect = 7e-41
 Identities = 112/121 (93%), Gaps = 6/121 (5%)
 Strand=Plus/Minus

Query  363  CAACCTTTTGCATGGTGCCTACATTATTTATTAGCTTCTTATCACGATTGGAGGCAGTCT  422
            ||| ||||||||||||||||  | ||||| ||||||||||||||||||||||||||||||
Sbjct  432  CAA-CTTTTGCATGGTGCCT--A-TATTTTTTAGCTTCTTATCACGATTGGAGGCAGTCT  377

Query  423  TGATCTGATGTCTTCTCATGTCTTCCTCTAAATTAAAAGCAGCTACAGTTTT-GT-CTTT  480
            |||||||||||||||||||||||||||| |||||||||||||||||| |||| || ||||
Sbjct  376  TGATCTGATGTCTTCTCATGTCTTCCTCCAAATTAAAAGCAGCTACATTTTTTGTTCTTT  317

Query  481  T  481
            |
Sbjct  316  T  316


> Ahg483451 jgi|Araly1|483451|fgenesh2_kg.4__2511__AT2G43410.3
Length=3371

 Score =  150 bits (81),  Expect = 3e-35
 Identities = 116/132 (88%), Gaps = 5/132 (4%)
 Strand=Plus/Plus

Query  1159  ACATTTATTCTGTTTTGCTTGCAATTTCATTATTGATGTCTACTTTGGTACTACTTTCTT  1218
             |||||| |||||| ||||||||| ||||| | |||||||||| ||||||||| |||||||
Sbjct  3136  ACATTTTTTCTGTGTTGCTTGCATTTTCAATGTTGATGTCTATTTTGGTACTTCTTTCTT  3195

Query  1219  TGATCCTTCTGTAG-ATCTAGTCTAGTAGTATTACATGCAACATCTAATCTGTTATTATT  1277
             |||| |||| || | |||||| ||||||||| ||||  ||||| ||||||||||||||||
Sbjct  3196  TGATTCTTCAGT-GAATCTAGCCTAGTAGTA-TACA--CAACAGCTAATCTGTTATTATT  3251

Query  1278  CTTATCACATGT  1289
             ||||||||||||
Sbjct  3252  CTTATCACATGT  3263



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 59039879750


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5