BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G43386.1

Length=171
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg483445 jgi|Araly1|483445|fgenesh2_kg.4__2505__AT2G43386.1         285    6e-77


> Ahg483445 jgi|Araly1|483445|fgenesh2_kg.4__2505__AT2G43386.1
Length=169

 Score =  285 bits (154),  Expect = 6e-77
 Identities = 164/169 (97%), Gaps = 0/169 (0%)
 Strand=Plus/Plus

Query  1    ATGACGTTTGAAAAGAAAATTGTGATTGTGTCAATGGCCATATTTTTAATGATAGTAGCA  60
            |||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGACGTTTGGAAAGAAAATTGCGATTGTGTCAATGGCCATATTTTTAATGATAGTAGCA  60

Query  61   ACAACCGCTACCGAAGTTGATGGTCGAATTCATGTCCGACGGAGCTTAGCTGATTTTGGT  120
            ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct  61   ACAACCGCTACCGAAGTTGATGGTCAAATTCATGTCCGACGGAGCTTAGCTGATTTTGGT  120

Query  121  GGAGGTTGTTGCAACGTTTTTATTCACACTTGTTGTTTTCCTAAACATT  169
            ||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct  121  GGAGGTTGTTGCAACGTGTTCATTCACACTTGTTGTTTTCCTAAACATT  169



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 5651862628


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5