BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G43390.1

Length=512
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg935239 jgi|Araly1|935239|scaffold_403227.1                        592    1e-168


> Ahg935239 jgi|Araly1|935239|scaffold_403227.1
Length=387

 Score =  592 bits (320),  Expect = 1e-168
 Identities = 362/383 (95%), Gaps = 0/383 (0%)
 Strand=Plus/Plus

Query  1    TACGTTGCTTTATATTCATGATGCCGGAACAAACGTACATGTACGCCTATGTAACGCTGC  60
            ||| |||||||||||| |||||||||||||||||||||||||||||||||||| ||||||
Sbjct  5    TACATTGCTTTATATTTATGATGCCGGAACAAACGTACATGTACGCCTATGTATCGCTGC  64

Query  61   CGCACCATGACCAGAGAGAACGCTACACTCAGAAATGTTATCGGGACGGAAGACGGATTG  120
            | |||||||||||| ||||||||||| ||||||||||||||||||||||||||||| | |
Sbjct  65   CACACCATGACCAGCGAGAACGCTACTCTCAGAAATGTTATCGGGACGGAAGACGGGTGG  124

Query  121  TGTTGGCAAGCTACGACTTGATGGGATCAGAGAGATTCAGTTTCAAAGAGAAGCTTCGGA  180
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct  125  TGTTGGCAAGCTACGACTTGATGGGATCAGAGAGATTCAGTTTCAAAGAGAAGCTTAGGA  184

Query  181  AGTCAATGAAAGGAATGAACGAGTCGGCCGAACGATGGGTTTCGGAAGTGCGTCAAGGTA  240
            |||| ||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||
Sbjct  185  AGTCGATGAAAGGAATAAACGAGTCGGCCGAGCGATGGGTTTCTGAAGTGCGTCAAGGTA  244

Query  241  CGACCAAGAGACGATTTGCGATTAGAGTCTTAAGGACAAAACTTGGCTTCTATTCTTGCT  300
            | ||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct  245  CAACCAAGAGACGTTTTGCGATTAGAGTTTTAAGGACAAAACTTGGCTTCTATTCTTGCT  304

Query  301  TCATTCGTAGTGTTGGATGTTTTACTTCTTGTGTGGGGCACAAAGATAATTTCATGAAGT  360
            |||||||||||||||| ||||||||| ||||||||||||||| |||||||||||||||||
Sbjct  305  TCATTCGTAGTGTTGGTTGTTTTACTCCTTGTGTGGGGCACAGAGATAATTTCATGAAGT  364

Query  361  AATTAATCTAAACCTAAAGTATT  383
            ||||||||||| | |||||||||
Sbjct  365  AATTAATCTAAGCGTAAAGTATT  387



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18619927432


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5