BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G43400.1
Length=2277
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483447 jgi|Araly1|483447|fgenesh2_kg.4__2507__AT2G43400.1 3291 0.0
> Ahg483447 jgi|Araly1|483447|fgenesh2_kg.4__2507__AT2G43400.1
Length=2179
Score = 3291 bits (1782), Expect = 0.0
Identities = 1999/2102 (95%), Gaps = 21/2102 (1%)
Strand=Plus/Plus
Query 92 TCCTTGGATCATCCTCCTAATTACTCAGTGATCATGCATAGATTCCTTGTAAAGCTATCT 151
||||||||||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct 52 TCCTTGGATCA---TCCTAATTACTCAGTGATCATGCATAGATTCCTTGTAAAG-----T 103
Query 152 TCTTCTTCTTCACCATTCTCTAATCAATTGAGAAGCTTGAAGAACCAGCGTCTGATTCTC 211
| ||||||| ||| |||||||| |||||||||||||||||| |||||||||||||||
Sbjct 104 T-GTCTTCTT---CATCCTCTAATCCATTGAGAAGCTTGAAGAATCAGCGTCTGATTCTC 159
Query 212 CCTCTATTACCTTCTTCAAAACCTTTTACCTCCTCCTCTGTGTCACCACCTCCAAGTCCC 271
||||||| |||||||||||| ||||||||||||| ||||| |||||||||||||| ||
Sbjct 160 CCTCTATCGCCTTCTTCAAAATCTTTTACCTCCTCTTCTGTCTCACCACCTCCAAGGCCA 219
Query 272 TTGAACGCTTCTAATCGATTTGGGTATCCTTATTCCGCCGATTTGTTTCGAAATTTGTCA 331
| |||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||
Sbjct 220 TCGAACGCTTCTAATCGATTTGGGTATCCTTATTTCGCCGAGTTGTTTCGAAATTTGTCA 279
Query 332 CCTTTAAACCCAAATTCGAGGATTTTAGGAGTCAATGGGATTACTAGTAGTAGATGTATC 391
||||||| | |||||||||||| ||||||||| |||||| | ||||||||||||||||
Sbjct 280 CCTTTAAGCTCAAATTCGAGGACTTTAGGAGTGAATGGG---AGTAGTAGTAGATGTATC 336
Query 392 AGCAGTGAAGCGGTCAGAGAATCGATTGAGTACGATGTTCTGATTGTCGGAGCTGGACCG 451
||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 337 AGCAGTGAATCGGGAAGAGAATCGATTGAGTACGATGTTCTGATTGTCGGAGCTGGACCG 396
Query 452 GCCGGTTTATCTGCTGCTATACGATTGAAACAACTGTCTCAGGAGAAGAACATTGATCTA 511
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 397 GCCGGTTTATCTGCTGCTATACGATTGAAACAACTGTCTCAGGAGAAGAACATTGATCTA 456
Query 512 TCTGTTTGTGTCGTTGAGAAAGGAGCAGAAGTTGGAGGACACATTATATCTGGAAATGTT 571
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 457 TCTGTTTGTGTCGTTGAGAAAGGAGCAGAAGTTGGAGGACACATTATATCTGGAAATGTT 516
Query 572 TTTGAACCCCTGGCACTTGATGAGCTTCTTCCACATTGGAGACAAGAACATGCACCCATT 631
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 517 TTTGAACCTCTGGCACTTGATGAGCTTCTTCCACATTGGAGACAAGAACATGCACCCATT 576
Query 632 GAGATCCCTGCTTCTTCTGATAAATTCTGGTTTTTGACGAAAGATCGTGCATTTTCACTT 691
|||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||
Sbjct 577 GAGATCCCTGCTTCTTCTGATAAATTCTGGTTTTTGACCAAAGATCGTGCAATTTCACTT 636
Query 692 CCTTCTCCGTTTGATAACAAGGGAAACTACGTTATTAGTTTGAGCCAACTGGTGCGTTGG 751
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 637 CCTTCTCCGTTTGATAACAAGGGAAACTACGTTATTAGTTTGAGCCAACTGGTGCGTTGG 696
Query 752 CTAGGAGGAAAAGCTGAGGAGCTTGGAACAGAGATATATCCTGGCTTTTCTGCTAGTGAG 811
|| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 697 CTGGGAGGAAAAGCTGAGGAGCTTGGAACAGAGATTTATCCTGGCTTTTCTGCTAGTGAG 756
Query 812 GTGTTATTTGATGCAAGTGATAAAGTTGTTGGGATTGCAACCAAAGATATGGGAATATCC 871
|| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 757 GTTTTATATGATGCAAGTGATAAAGTTGTTGGGATTGCAACCAAAGATATGGGAATATCC 816
Query 872 AAAGATGGTTCCAAGAAAGAGAATTTCCAGCCAGGTGTTGACATAAAAGGGCGAGTTACA 931
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 817 AAAGATGGTTCCAAGAAGGAGAATTTCCAGCCAGGTGTTGACATAAAAGGGCGAGTTACA 876
Query 932 CTGTTTGCAGAGGGATGTAGAGGATCATTGTCAGAGAGAATAATCAAAAAGTATAAATTA 991
||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 877 CTGTTTGCAGAGGGATGCAGAGGATCATTGTCGGAGAGAATAATCAAAAAGTATAAATTA 936
Query 992 AGAGAAGAGGTTAATGCACAACATCAAACATATGCTTTGGGAATCAAGGAGGTCTGGGAG 1051
||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 937 AGAGAGGAGGTTAATGCACAACATCAGACATATGCTTTGGGAATCAAGGAGGTCTGGGAG 996
Query 1052 ATAGATGAAAGCAAACATAACCCTGGAGAAGTTATTCACACATTGGGTTGGCCCTTGGAT 1111
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 997 ATAGATGAAAGCAAGCATAACCCTGGCGAAGTTATTCACACATTGGGTTGGCCCTTGGAT 1056
Query 1112 CCCAAGACATATGGAGGTTCTTTCTTGTACCACATGAACGATAGACAGGTTGCACTTGGC 1171
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1057 CCCAAGACATATGGAGGTTCTTTCTTGTACCACATGAATGATAGACAGGTTGCACTTGGC 1116
Query 1172 TTGGTTGTTGCCTTGAACTACCACAACCCTTTCTTGAATCCGTATGAGGAATTTCAGAAA 1231
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1117 TTGGTTGTTGCCTTGAATTACCACAACCCTTTCTTGAATCCGTATGAGGAATTTCAGAAA 1176
Query 1232 CTCAAACACCATCCTGCTATTAAAGGCATCTTGGAAGGTGGTACCGTGCTTCAGTATGGA 1291
||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 1177 CTCAAACACCATCCTGCCATTAAAGGCATCTTGGAAGGTGGTACTGTGCTTCAGTATGGG 1236
Query 1292 GCTCGTACTTTAAATGAAGGTGGTTTTCAGTCCATTCCCTATCCAGTTTTTCCTGGAGGA 1351
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1237 GCTCGTACTTTAAATGAAGGTGGTTTTCAGTCCATTCCCTATCCAGTTTTTCCTGGAGGA 1296
Query 1352 GCAATAATTGGATGTTCAGCTGGTTTTCTCAATGTACCCAAGATTAAGGGAACACACACT 1411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1297 GCAATAATTGGATGTTCAGCTGGTTTTCTCAATGTACCCAAGATTAAGGGAACACACACT 1356
Query 1412 GCAATGAAATCAGGAATGTTAGCAGCAGAGGCTGCATTTGGTGCACTTCATGAAGGCTTA 1471
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1357 GCAATGAAATCAGGAATGTTAGCAGCAGAGGCTGCATTTGGTGCACTTCATGAAGGTTTA 1416
Query 1472 AACATGAACACGTACTGGGACAACTTGAGGGATTCATGGGTGTGGAAGGAGCTCTACGCA 1531
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1417 AACATGAACACGTACTGGGACAACTTGAGGGATTCATGGGTGTGGAAGGAACTCTACGCT 1476
Query 1532 GCTCGAAACTATCGTCCTGCATTCGAGTATGGGCTACTTCCTGGCTTGGCCATTAGTGCT 1591
||||||||||| |||||||||||||||||||||||||| |||||||||||| ||||||||
Sbjct 1477 GCTCGAAACTACCGTCCTGCATTCGAGTATGGGCTACTCCCTGGCTTGGCCGTTAGTGCT 1536
Query 1592 ATGGAACACTATGTACTGAAAGGAAAAGTCCCTTTCACGCTCAAGCATGGGAAAGCAGAC 1651
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1537 ATGGAACACTATGTACTGAAAGGAAAAGTTCCTTTCACGCTCAAGCATGGGAAAGCAGAC 1596
Query 1652 CACGAAGCAACAGATCTTGCTCGGAAATGGACACCGATTGTGTATCCAAAGCCGGATGGT 1711
||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 1597 CACGAAGCAACAGATCTTGCTCGGAAATGCACACCGATTGTGTATCCAAAGCCAGATGGT 1656
Query 1712 GTTTTGTCGTTTGATGTGCCAACTTCTTTATACAGGAGTAATACCAATCATGATCATGAT 1771
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1657 GTTTTATCGTTTGATGTGCCAACTTCTTTATACAGGAGTAATACCAATCATGATCACGAC 1716
Query 1772 CAACCATCTCATTTGCGCTTGAGGGATCCTAAGATTCCAGAAAAGGTAAACTTTCCAGAG 1831
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1717 CAACCATCTCATTTGCGCTTGAGGGATCCTAAGATTCCAGAAAAGGTAAACTTCCCAGAG 1776
Query 1832 TATGCTGCGCCAGAGTCACGTTACTGCCCAGCCCGTGTTTACGAATATATCGAAGACGAA 1891
|||||||| |||||||||| ||||||||| ||||||||||| ||||||||||||||||||
Sbjct 1777 TATGCTGCACCAGAGTCACATTACTGCCCGGCCCGTGTTTATGAATATATCGAAGACGAA 1836
Query 1892 GAGGGTAAGCCAAAACTGCAGATCAACGCTCAAAACTGTTTGCACTGCAAGGCATGTGAC 1951
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1837 GAGGGTAAACCGAAACTGCAGATCAACGCTCAAAACTGTTTGCACTGCAAGGCATGTGAC 1896
Query 1952 ATCAAAGATCCAAAGCAGAACATAGAGTGGACAGTGCCTGAAGGTGGTGGAGGCCCTGCC 2011
||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1897 ATCAAAGATCCGAAGCAGAACATAGAGTGGACAGTGCCTGAAGGTGGTGGTGGCCCTGCT 1956
Query 2012 TATTCCCTCATGTAGTCCTTAAGATTCAACATACCTCTCTC--ACTTTACCATATCTGAT 2069
||||||||||||||||||| || ||||||| ||||| | | || | |||||||||||
Sbjct 1957 TATTCCCTCATGTAGTCCTCAACTTTCAACAAACCTCACACTTACCAT-CCATATCTGAT 2015
Query 2070 AAATAAATGAGACTCAACAAAATCCTAATTGTCTGGGTTTTCTTTTT-ACTAAATGTTTG 2128
||||||||||||||||||||||||||||| |||| | |||| ||||| ||||||||||||
Sbjct 2016 AAATAAATGAGACTCAACAAAATCCTAATCGTCTTGATTTTTTTTTTTACTAAATGTTTG 2075
Query 2129 TAATCATTAGTGTTACCTGTGTTTGTACACTTTCACTTGACGTCTATTCCaaaaaaaaaa 2188
||| | |||||||| | | |||||||| ||||||||||||| |||||| ||||||||||
Sbjct 2076 TAAGCGTTAGTGTTTCGTTTGTTTGTAAACTTTCACTTGACTTCTATT--AAAAAAAAAA 2133
Query 2189 aa 2190
||
Sbjct 2134 AA 2135
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 85741141495
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5