BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G43410.2
Length=3312
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483451 jgi|Araly1|483451|fgenesh2_kg.4__2511__AT2G43410.3 4730 0.0
Ahg938971 jgi|Araly1|938971|scaffold_503162.1 1127 0.0
> Ahg483451 jgi|Araly1|483451|fgenesh2_kg.4__2511__AT2G43410.3
Length=3371
Score = 4730 bits (2561), Expect = 0.0
Identities = 2864/3008 (95%), Gaps = 29/3008 (1%)
Strand=Plus/Plus
Query 1 CTGGCctctctttctctcacaatctaa---tcttcttcgtcttcaaactcaatctagggt 57
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1 CTGGCCTCTCTTTCTCTCACAATCTAATCTTCTTCTTCGTCTTCAAACTCAATCTAGGGT 60
Query 58 tctcttctcctctctGTAGGTAGGATTTTGAACACCCAAATCTCTCATCGAATTTTTCTT 117
||||||||||||| ||||||||||| |||||| || |||||||||| | |||||| ||||
Sbjct 61 TCTCTTCTCCTCTGTGTAGGTAGGACTTTGAAAACTCAAATCTCTC-T-GAATTTATCTT 118
Query 118 GCTCAACG--T-A-----TCATCGCACAATTCGTCTCTCGTTTTCCGTCACGTGGATAAT 169
||||| | | | ||||||||||||||||||||||||||||||| ||||||| ||
Sbjct 119 CCTCAAGGTATCATTGCTTCATCGCACAATTCGTCTCTCGTTTTCCGTCTCGTGGAT-AT 177
Query 170 CGAAATCTCATAATCCC-AAAGGTAAAACAATC-AATTCTGGGATTGGAATTTTGGATCC 227
||||||||||| ||||| ||||||||||||||| |||||||||||| |||||||||||||
Sbjct 178 CGAAATCTCATTATCCCAAAAGGTAAAACAATCAAATTCTGGGATTCGAATTTTGGATCC 237
Query 228 ATAGGA--TCGTCAATTGAAACAATCCCGATGGCGTTATCTATGAAGCCATTCAGAGCCG 285
|||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 238 ATAGGATCTCGTCAATTGAAACAATCCCGATGGCGTTAGCTATGAAGCCATTCAGAGCCG 297
Query 286 ATGATTCCGGTTTCCAGTCAAACAATCTTTGGGTCGGTAGCCTAACGCCGGAGACGACAG 345
|||||||||||||||| || ||||||||||||||||||||||| |||||||| |||||||
Sbjct 298 ATGATTCCGGTTTCCAATCGAACAATCTTTGGGTCGGTAGCCTTACGCCGGAAACGACAG 357
Query 346 AGTCAGATCTGACCGAGTTGTTTGGAAGATACGGCGATATTGATAGAATCACGGTGTATT 405
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 358 AGTCAGATCTGACCGAGTTGTTTGGAAGATACGGCGATATTGATAGAATAACGGTGTATT 417
Query 406 CTTCACGAGGCTTTGCGTTTATATACTACAGACATGTGGAGGAAGCAGTCGCAGCCAAAG 465
||||||| |||||||||||||||||||||||||||||||||||||| || ||||| ||||
Sbjct 418 CTTCACGTGGCTTTGCGTTTATATACTACAGACATGTGGAGGAAGCTGTGGCAGCGAAAG 477
Query 466 AGGCTCTTCAAGGAGCAAATTTGAATGGAAGTCAAATTAAGATCGAATACGCACGACCGG 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 AGGCTCTTCAAGGAGCAAATTTGAATGGAAGTCAAATTAAGATCGAATACGCACGACCGG 537
Query 526 CAAAACCTTGTAAGAGTCTATGGGTGGGTGGAATCGGCCCTAATGTCTCCAAGGATGACC 585
||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||
Sbjct 538 CAAAACCTTGTAAGAGTCTTTGGGTGGGTGGAATCGGCCCTAGTGTCTCCAAGGATGACC 597
Query 586 TGGAGGAAGAGTTCAGCAAGTTTGGGAAAATCGAGGATTTTAGGTTTCTCAGAGAACGCA 645
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 TGGAGGAAGAGTTCAGCAAGTTTGGGAAAATCGAGGATTTTAGGTTTCTCAGAGAACGCA 657
Query 646 AGACAGCTTTCATTGATTATTATGAGATGGATGATGCTTTACAGGCTAAGAGCATGAATG 705
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 AGACAGCTTTCATTGATTATTATGAGATGGATGATGCTTTACAGGCTAAGAGCATGAATG 717
Query 706 GAAAGCCTATGGGTGGTAGCTTTTTGCGTGTTGATTTTCTCCGGTCACAAGCGCCaaaaa 765
|||||| |||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 718 GAAAGCGAATGGGTGGTAGCCATTTGCGTGTTGATTTTCTCCGGTCACAAGCGCCAAGAA 777
Query 766 aaGAACAATGGGCTGGCTCTTACGATAACAGAAATGGCAATATGAATCATAAACCGCAGT 825
|||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 778 AAGAACAATGGGCTGGCTCTTATGATAACAGGAATGGCAATATGAATCATAAACCGCAGC 837
Query 826 ATCCTCACTCATATGAAGACTTTAAAGGAGATGTCCAGCCAAGTAAGGTTCTGTGGATTG 885
|||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct 838 ATCCTCACTCATATGACGACGGTAAAGGAGATGTCCAGCCAAGTAAGGTTCTGTGGATTG 897
Query 886 GGTTCCCTCCTACTGCTACACAATGCAATGATGAGCAAATTCTGCACAATGCGATGATAC 945
|||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 898 GGTTCCCTCCTACTGCTACACAATGCAATGATGAGCAAATGCTGCACAATGCAATGATAC 957
Query 946 TCTTTGGTGAGATCGAGAGGGTAAAAAGTTACCCATCAAGGAATTTTGCACTTGTGGAGT 1005
||| |||||||||||||||| ||||| ||||||||||||| ||||| ||||||||||||
Sbjct 958 TCTATGGTGAGATCGAGAGGATAAAATGTTACCCATCAAGTCATTTTTCACTTGTGGAGT 1017
Query 1006 TTAGGAGCGCGGAGGAAGCTCGCCAATGC-AAGGAAGGCCTACAGGGGAGGTTATTCAAT 1064
||||||||||||||||||||||||| ||| |||||||| ||||||||||||||||||||
Sbjct 1018 TTAGGAGCGCGGAGGAAGCTCGCCA-TGCCAAGGAAGGGATACAGGGGAGGTTATTCAAT 1076
Query 1065 AATCCTAGAATCAAAATTATGTACTCAAACGATGAGTTGCCTCCTGAGCAAGACGATACT 1124
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1077 AATCCTAGAATCAAAATTATGTACTCAAACGATGAGTTGCCTCTTGAGCAAGACGATACC 1136
Query 1125 AGTTTTTACTCTGGTATGAAACGGTCAAGGACAGATATGTTCAATAATGATCCTTCATTT 1184
|||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 1137 AGTTTTTACTCTGGTACGAAACGGTCAAGGACAGATATGTTCAACAATGATCCTTCCTTT 1196
Query 1185 GTATCTTCTCCTCATTCTACTGGAATTCCTGGGTCTATGAGGCCCCTCAGAGGTA-CAAA 1243
|||||||||||||| ||||||||||||||||||||||||||||| |||||||||| |||
Sbjct 1197 GTATCTTCTCCTCACTCTACTGGAATTCCTGGGTCTATGAGGCCTCTCAGAGGTAGCAA- 1255
Query 1244 TGAGCGTTCATATAATGGTGCAGAATACAATGACGTTGTTGGTAAGGAGCCAAACTGGAG 1303
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1256 TGAGCGTTCATATAATGGTTCAGAATACAATGACGTTGTTGGTAAGGAGCCAAACTGGAG 1315
Query 1304 GAGGCCATCTGCAAATGGAACTGGAATACTCCCATCTCCAACAGGACCTGGAATCCTCCC 1363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1316 GAGGCCATCTGCAAATGGAACTGGAATACTCCCATCTCCAACAGGACCTGGAATCCTCCC 1375
Query 1364 ATCTCCTGCACAAGGTACGAGGCGCCCTATGAGGTCAAACCCCGATTCTTGGGAAGGATA 1423
||||||||||||||||| ||||| |||||||||||||||| ||| |||||||||||||||
Sbjct 1376 ATCTCCTGCACAAGGTATGAGGCACCCTATGAGGTCAAACGCCGGTTCTTGGGAAGGATA 1435
Query 1424 TGATCCTGCTCAGTTGGTCAGAGAAAGTAAACGAACCAGAAGAGATGGATCAGTGGACGG 1483
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1436 TGATCCTGCTCAGTTGGACAGAGAAAGTAAACGAACCAGAAGAGATGGATCAGTGGACGG 1495
Query 1484 TTTTACTCCAATGGGTGTCGATGAGAGGTCATTTGGTCGAGGTTCAGTTGCTGCTAGACC 1543
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 1496 TTTTACTCCAATGGGTGTCGATGAGAGGTCATTTGGGCGAGGTTCAGTTGCTGCTAGGCC 1555
Query 1544 TATCCGTGGCCCCCCTGATTCTGATCACATATGGAGAGGAATGATTGCCAAGGGTGGAAC 1603
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1556 TATCCGTGGCCCCCCTGATTCTGATTACATATGGAGAGGAATGATTGCCAAGGGTGGAAC 1615
Query 1604 TCCCGTCTGTTGTGCTCGTTGTGTACCTATGGGAAAGGGGATTGAAACTAAACTGCCTGA 1663
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1616 TCCTGTCTGTTGTGCTCGTTGTGTACCTATGGGAAAGGGGATTGAAACTAAACTGCCTGA 1675
Query 1664 GGTCGTCAATTGTTCAGCAAGAACTGATTTGAATATGCTCGCTAAACATTACGCCGTTGC 1723
|||||||||||||||||||||||||| ||||||||||||||| ||||||||||| | |||
Sbjct 1676 GGTCGTCAATTGTTCAGCAAGAACTGGTTTGAATATGCTCGCCAAACATTACGCTGATGC 1735
Query 1724 CATTGGATGTGAGATCGtttttttCGTACCAGACAGGGAAGAAGATTTTGCGTCTTACAC 1783
|||||||| |||||||||||| ||| ||||| || | ||||||||||||||||||||||
Sbjct 1736 CATTGGATTTGAGATCGTTTTCTTCTTACCATACCGTCAAGAAGATTTTGCGTCTTACAC 1795
Query 1784 TGAATTTCTCCGGTACCTTAGCTCAAAAGATCGGGCGGGTGTTGCCAAATTAGATGATGG 1843
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1796 TGAATTTCTCCGCTACCTTAGCTCAAAAGATCGGGCGGGTGTTGCCAAATTAGATGATGG 1855
Query 1844 TACAACTTTATTCTTGGTGCCTCCATCAGATTTCTTAACTGATGTACTCCAAGTGACCCG 1903
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
Sbjct 1856 TACAACTTTATTCTTGGTGCCTCCATCAGATTTCTTAACTGATGTACTCCATGTGACCGG 1915
Query 1904 TCAAGAACGGCTATATGGTGTTGTTCTCAAGTTACCCCCGCCAGCCGTTCCTGTTACAGC 1963
|| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1916 TCCAGAACGGCTATATGGTGTTGTTCTCAAGTTGCCCCCGCCAGCCGTTCCTGTTACAGC 1975
Query 1964 ATCATACAGACAAGAATCTCAGTCCAATCCTCTGCATTATATGGATCAAGCCCGGGATTC 2023
| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1976 AGCATACAGACAAGAATCTCAGTCCAATCCTCTGCAATATATGGATCAAGCCCGGGATTC 2035
Query 2024 ACCTGCCAATGCTAGTCACAGTTTATATCCTCCTAGGGAAAATTACATTAGGGGTGCACC 2083
|||||||||||| ||||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct 2036 ACCTGCCAATGCCAGTCATAGTTTATATCCTCCTAGGGAAAATTACAATAGGGGTGCACC 2095
Query 2084 AGAACATTTGACAGCTGCTTCAAAACCATCTGTTAGCGAGCCTCTCAGAATACCTAATAA 2143
|||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||
Sbjct 2096 AGAACATTTGACAGCTTCTTCAAAACCATCGGTTAGCGAGCCTCTCAGAATACCTAATAA 2155
Query 2144 TGCAGCGCCTCAAGCTGGGGTTAGTTTAACTCCGGAGCTTTTAGCCACTCTGGCATCTAT 2203
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2156 TGCAGCGCCCCAAGCTGGGGTTAGTTTAACTCCGGAGCTTTTAGCCACTCTGGCATCTAT 2215
Query 2204 TCTCCCTGCAACTTCTCAACCTGCTGCCCCTGAGAGTCACCAACCTATGTCAGGACCTTC 2263
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 2216 TCTCCCTGCAACTTCTCAACCTACTGCCCCTGAGAGTCACCAACCTATGTCAGGACCTTC 2275
Query 2264 AACAGTTGTTTCCACAGCACATCAGTCCAATGGACTGTACAATGGAGAAGCACCGTCTCA 2323
||||||||||||||||| || ||| |||||||||||||||||||||||| ||||||||||
Sbjct 2276 AACAGTTGTTTCCACAGTACCTCAATCCAATGGACTGTACAATGGAGAAACACCGTCTCA 2335
Query 2324 AGCTTGGAAAAGAGGTCCACAAACAGTTCATGATGCGTCAAATCAGTCATTCCAACAATA 2383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2336 AGCTTGGAAAAGAGGTCCACAAACAGTTCATGATGCGTCAAATCAGTCATTCCAACAATA 2395
Query 2384 CGGAAATCAGTACACTCCAGCTGGGCAACTACCTCCTCCTCCTTCGCGTTACCCTCCAGC 2443
||| ||||| ||||||||||||||||||||||||||||||||| ||| ||| ||||||||
Sbjct 2396 CGGCAATCAATACACTCCAGCTGGGCAACTACCTCCTCCTCCTGCGCTTTATCCTCCAGC 2455
Query 2444 TTCAAACAACCCCAACTACACTAGTGGAATGGTCCATGGCAACATGCAATACCAGAG-CC 2502
||||||||||||||||||| ||||||||| |||||||||||||||||||||||| || ||
Sbjct 2456 TTCAAACAACCCCAACTACTCTAGTGGAACGGTCCATGGCAACATGCAATACCA-AGGCC 2514
Query 2503 AATCTGTTAACATGCCTCAGCTGTCTCCGTTACCAAATATGCCTCATAATAATTATTCCA 2562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2515 AATCTGTTAACATGCCTCAGCTGTCTCCGTTACCAAATATGCCTCATAATAATTATTCCA 2574
Query 2563 TGTACACTCAGGGTTCGTCAAATCATCCTGTTTCTCAGCCCATGGTC-CAGCAATACCAA 2621
|||||||||||||||||||||||||||||||||||||||||||| | |||||||| |||
Sbjct 2575 TGTACACTCAGGGTTCGTCAAATCATCCTGTTTCTCAGCCCATGA-CACAGCAATATCAA 2633
Query 2622 CCAGAAGCGTCCATGCCAAACCAAAACTATGGTCCAATTCCAAGTTATCAGCAAGCTAAT 2681
|||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2634 CCAGAAGCTTCCGTGCCAAACCAAAACTATGGTCCAATTCCAAGTTATCAGCAAGCTAAT 2693
Query 2682 TTTCATGGCGTAACAACAAATCAGGCACAGAACTTAAACCCTTCCCAATTTCAAGCTGCC 2741
| |||||| |||||||||||||||||||| |||||||||||||||||||||||||||| |
Sbjct 2694 TATCATGGTGTAACAACAAATCAGGCACATAACTTAAACCCTTCCCAATTTCAAGCTGTC 2753
Query 2742 ATGCAACCACCAGCAGATAAGGCAAATTTAGAGCCACAAAACCAAGCACTACGATTGCAG 2801
||||||||||||| ||| |||||||| |||||||||||||||||||||| || |||||||
Sbjct 2754 ATGCAACCACCAGTAGACAAGGCAAACTTAGAGCCACAAAACCAAGCACCACAATTGCAG 2813
Query 2802 CCTATGATCTCTGGGGATGGTCAGGGTACAACAGATG--GGG-AGGTCGATAAGAATCAG 2858
|||||||||||||||| ||| |||||||||||||||| ||| |||||||||||||||||
Sbjct 2814 CCTATGATCTCTGGGGCTGGACAGGGTACAACAGATGATGGGGAGGTCGATAAGAATCAG 2873
Query 2859 AGATACCAGTCAACACTACAATTTGCAGCAAACCTTCTTCTCCAGATACAGCAGAAACAG 2918
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2874 AGATACCAGTCAACACTACAATTTGCAGCAAACCTTCTTCTCCAGATACAGCAGAAGCAG 2933
Query 2919 CAGCAACAGTCTTCAGGTACTCCGGCTGGACAGGGGCCTTGAAACTAGCTCCACTCTCCA 2978
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 2934 CAGCAACAGTCTTCAGGTACTCCGGCTGGACAGGGGCCTTGAAACTAGCTACACTCACCA 2993
Query 2979 TCATAATC 2986
|||| |||
Sbjct 2994 TCATTATC 3001
> Ahg938971 jgi|Araly1|938971|scaffold_503162.1
Length=2762
Score = 1127 bits (610), Expect = 0.0
Identities = 1414/1790 (79%), Gaps = 104/1790 (6%)
Strand=Plus/Plus
Query 296 TTTCCAGTCAAACAATCTTTGGGTCGGTAGCCTAAC-GCCGGAGACGACAGAGTCAGATC 354
||| || || |||||||| ||||||||||| | || || || || ||||| || ||||
Sbjct 61 TTT-CAATCGAACAATCTCTGGGTCGGTAGTTTGACAACC-GATACTACAGAATCCGATC 118
Query 355 TGA-CCGAGTTGTTTGGAAGATACGGCGATATTGATAGAATCACGGTGTATTCTTCACG- 412
| | |||| ||||||||||||| || || |||||||||||||||| || |||||| ||
Sbjct 119 T-AGCCGATTTGTTTGGAAGATTTGGTGAAATTGATAGAATCACGGCGTTTTCTTCCCGT 177
Query 413 AGGCTTTGCGTTTATATACTACAGACATGTGGAGGAAGCAGTCGCAGCCAAAGAGGCTCT 472
| |||| |||||||| |||||||||| ||| || ||||| || || || |||||||| ||
Sbjct 178 A-GCTTCGCGTTTATCTACTACAGACGTGTTGAAGAAGCTGTGGCGGCGAAAGAGGCGCT 236
Query 473 TCAAGGAGCAAATTTGAATGGAAGTCAAATTAAGATCGAATACGCACGACCGGCAAAACC 532
|||||| || |||||||||| ||||| ||||||||||||| ||| ||||||||||||||
Sbjct 237 TCAAGGTGCTGATTTGAATGGGAGTCAGATTAAGATCGAATTCGCTCGACCGGCAAAACC 296
Query 533 TTGTAAGAGTCTATGGGTGGGTGGAATCGGCCCTAATGTCTCCAAGGATGACCTGGAGGA 592
|||||||||||| ||||||||||||||| |||| | ||| || ||||||||||||||||
Sbjct 297 TTGTAAGAGTCTTTGGGTGGGTGGAATCAGCCCGAGTGTTTCAAAGGATGACCTGGAGGC 356
Query 593 AGAGTTCAGCAAGTTTGGGAAAATCGAGGATTTTAGGTTTCTCAGAGAACGCAAGACAGC 652
||||||||| || ||||| |||||||| ||||| |||||||| || ||||||||||| ||
Sbjct 357 AGAGTTCAGGAACTTTGGCAAAATCGAAGATTTCAGGTTTCTTAGGGAACGCAAGACGGC 416
Query 653 TTTCATTGA-TTATTATGAGATGGATGATGCTTTA-CAGGCTAAGAGCATGAATGGAAAG 710
||| ||||| || |||| | ||||| |||||| || | ||| |||| |||||| ||||||
Sbjct 417 TTTTATTGACTT-TTATAACATGGAAGATGCTATAGC-GGCAAAGAACATGAACGGAAAG 474
Query 711 CCTATGGGTGGTAGCTTTTTGCGTGTTGATTTTCTCCGGTCACAAGCGCCaaaaaaaGAA 770
||||| ||||| |||||| ||||||||||| |||||||||| |||| ||||||||
Sbjct 475 AGAATGGGAAATAGCTATTTGCGAGTTGATTTTCTTCGGTCACAAGGGCCACAAAAAGAA 534
Query 771 CAATGGGCTGGCTCTTACGATAACAGAAATGGCAATATGAATCA-TAAACCGCAGTATCC 829
| |||| |||||||| | ||| ||| |||||| | ||| | | ||||| ||||||||
Sbjct 535 CCATGGCCTGGCTCTAATGATGGCAGGGATGGCAGTTTGAGT-ACTAAACAACAGTATCC 593
Query 830 TCACTCATAT-GAAGACT-TTAAAGGAG-ATGTCCAG-CCAAGTAAGGTTCTGTGGATTG 885
|||||||| | | ||| | | |||||| | | || | |||||||| || ||| ||||||
Sbjct 594 TCACTCAT-TCGGAGA-TGCTGAAGGAGAACG-CC-GACCAAGTAATGTACTGAGGATTG 649
Query 886 GGTTCCCTCCTACTGCTACACAATGCAATGATGAGCAAATTCTGCACAA-TGCGATGATA 944
| | ||||||| ||| | | | | | ||| ||||||| || ||||| || ||||||
Sbjct 650 GATACCCTCCTTCTG-T--TC-A-G-ATTGACGAGCAAACACTACACAATTG-TATGATA 702
Query 945 CTCTTTGGTGAGATCGAGAG-GGTAAAAAGTTACCCATCAAGGAATTT-TGCACTTGTGG 1002
|||||||||||||| ||||| || || ||||||||||||||| |||| | |||||||||
Sbjct 703 CTCTTTGGTGAGATTGAGAGATGT-AATAGTTACCCATCAAGGCATTTCT-CACTTGTGG 760
Query 1003 AGTTTAGGAGCGCGGAGGAAGCTCGCCAATGC-AAGGAAGGCCTACAGGGGAGGTTATTC 1061
| ||||| ||| ||||||||||| ||| |||||||| ||||| || |||||| ||
Sbjct 761 AATTTAGAAGCATTGAGGAAGCTCG-TTGTGCTAAGGAAGGACTACATGGAAGGTTACTC 819
Query 1062 AATAATCCTAGAATCAAAATTATGTACTCAAACGATGA-GTTGCCTCCT-GAGC-A--AG 1116
||| |||| ||||||| ||| |||||||| || ||||| || || ||| || | | ||
Sbjct 820 AATGATCCAAGAATCACAATAATGTACTCGAATGATGACATT-CCCCCTGGA-CGAGGAG 877
Query 1117 ACGATACTAGTTTTTACTCTGGTATGAAACGGTCAAGGACAGATATGTTCAAT-AATGAT 1175
| ||||| |||||||| |||||| ||||| |||||| | || |||||| | ||||||
Sbjct 878 ATGATACCAGTTTTTATTCTGGTGCCAAACGATCAAGGCCTGAGATGTTC-GTCAATGAT 936
Query 1176 CCTTCATTTGTATCTTCTCCTCATTCTACTGGAATTCCTGGGTCTATGAGGCCC-CTCAG 1234
||| |||| | || || || ||||||| ||| || ||| |||||||||||| || |
Sbjct 937 CCTCCATTCATCTCGTCACCGCATTCTAGTGGGTTTTTTGGCTCTATGAGGCCCTTTC-G 995
Query 1235 AGGTA-CAAATGAGCGTTCATATAATGGTGCAGAATACAATGACGTTGTTGGTA-AGGAG 1292
||| | | ||| |||||| ||| |||| ||||||| | || || ||||||| || ||
Sbjct 996 AGGAAGC-GTTGAACGTTCACATAGTGGTCCAGAATATAGCGATGTGGTTGGTACAGAAG 1054
Query 1293 CCAAA-CTGGAGGAGGCCATCTGCAAATGGAA-CTGGAATACTCCCATCTCCAACAGGAC 1350
||| |||| ||||||||||| ||| | ||| |||||| | | |
Sbjct 1055 --AAAGCTGGGGGAGGCCATCTCCAACT-GAAGCTGGAA-A-----A--T---------- 1093
Query 1351 CTGGAATCCTCCCATCTCCTGCACAAGGTACGAGGCGCCCTATGAGGTCAAACCCCGATT 1410
||||||| ||||| |||||||||| | ||| | || ||| | |||||||||| | ||
Sbjct 1094 CTGGAATACTCCCGTCTCCTGCACCACATACAATGCTACCTGTTAGGTCAAACCGTGGTT 1153
Query 1411 CTTGGGAAGGATATGATCCTGCTCAGTTGG-TCAGAGAAAGTAAACGAACCAGAAGAGAT 1469
|||||||||||||||||||||||||||||| | |||||| ||| ||||| | ||||||
Sbjct 1154 CTTGGGAAGGATATGATCCTGCTCAGTTGGAT-AGAGAACCCAAAAGAACCCGTAGAGAT 1212
Query 1470 GGATCAGTGGACGGTTTTACTCCAATGGGTGTCGATGAGAG-GTCA-T---TT-G---G- 1519
||||||||||| | |||| || ||||| |||| ||||| | |||| | || | |
Sbjct 1213 GGATCAGTGGATGTTTTTCCTTCAATGAGTGTAGATGACCGTGTCACTGGGTTTGACAGG 1272
Query 1520 ---T-CGAG-GT---TCAGTTGCTGCTAGA-CCTATCCGTGGCCCCCCTGATTCTGATCA 1570
| || | || |||||||| || || || |||||| ||||||| |||||
Sbjct 1273 ACATACGGGCGTGGGTCAGTTGCAGCCAGGTCCGG-CCGTGGTTTCCCTGATACTGATTT 1331
Query 1571 CATATGGAGAGGAATGATTGCCAAGGGTGGAACTCCCGTCTGTTGTGCTCGTTGTGTACC 1630
||| ||||||||||| |||||||| ||||||||| | | ||| ||||||||||||||||
Sbjct 1332 CATTTGGAGAGGAATCATTGCCAAAGGTGGAACTACTATTTGTCGTGCTCGTTGTGTACC 1391
Query 1631 TATGGGAAAGGGGATTGAAACTAAACTGCCTGAGGTCGTCAATTGTTCAGCAAGAACTGA 1690
| | |||||||||| ||||||| |||| |||||| |||||||||||||||||||||| |
Sbjct 1392 TTTCGGAAAGGGGACTGAAACTGAACTCCCTGAGATCGTCAATTGTTCAGCAAGAACGGG 1451
Query 1691 TTTGAATATGCTCGCTAAACATTACGCCGTTGCCATTGGATGTGAGATCGtttttttCGT 1750
|||| ||||||| || ||||||||| ||| |||||||||| ||| |||||||| ||| |
Sbjct 1452 TTTGGATATGCTTGCCAAACATTACACCGAAGCCATTGGATTTGAAATCGTTTTCTTCTT 1511
Query 1751 ACCAGACAGGGAAGAAGATTTTGCGTCTTACACTGAATTTCTCCGGTACCTTAGCTCAAA 1810
||||||||||||||| ||||| |||||||| |||||||| ||| | |||||| | |||||
Sbjct 1512 ACCAGACAGGGAAGACGATTTCGCGTCTTATACTGAATTCCTCTGCTACCTTGGTTCAAA 1571
Query 1811 AGATCGGGCGGGTGTTGCCAAATTAGATGATGGTACAACTTTATTCTTGGTGCCTCCATC 1870
| |||| || ||||| ||||||||||| ||||| || |||||||| ||||| ||||||||
Sbjct 1572 AAATCGAGCAGGTGTGGCCAAATTAGACGATGGAACCACTTTATTTTTGGTTCCTCCATC 1631
Query 1871 AGATTTCTTAACTGATGTACTCCAAGTGACCCGTCAAGAACGGCTATATGGTGTTGTTCT 1930
|||||||||||||||||| ||| ||||| | ||| ||||||| ||||||||||||||||
Sbjct 1632 AGATTTCTTAACTGATGTGCTCAAAGTGTCGGGTCCAGAACGGTTATATGGTGTTGTTCT 1691
Query 1931 CAAGTTACCCCCGCCAGCCG-TTCCTGTTACAGCATCATACAGACAAGAATCTCAGTCCA 1989
|||||| ||||| ||| | | |||||| ||||||| || | ||||||| || | |||
Sbjct 1692 CAAGTTGCCCCCACCA-CAGGTTCCTGCCGCAGCATCGTATAAACAAGAACCTTA-TCCC 1749
Query 1990 AT-CCTC--TGCATTATATGGATCAAGCCCGG-GATTCACCTGCCAATGC 2035
|| |||| | | |||||||| |||| | ||| | || |||||||||||
Sbjct 1750 ATTCCTCAAT-C-TTATATGGGTCAATCTCGGAGTTTG-CCTGCCAATGC 1796
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 125019127305
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5