BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G43420.1
Length=2073
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483452 jgi|Araly1|483452|fgenesh2_kg.4__2512__AT2G43420.1 2935 0.0
> Ahg483452 jgi|Araly1|483452|fgenesh2_kg.4__2512__AT2G43420.1
Length=1881
Score = 2935 bits (1589), Expect = 0.0
Identities = 1789/1883 (95%), Gaps = 24/1883 (1%)
Strand=Plus/Plus
Query 1 TAAAGGAAAACGCTAAAAGGTTGCGCGAGTGGAGAG-------TCTGCCCGCCAAGCAAC 53
|||| ||||||||||||||||| ||||||||||||| |||||||||||||||||
Sbjct 1 TAAATGAAAACGCTAAAAGGTTTCGCGAGTGGAGAGCATATAATCTGCCCGCCAAGCAAC 60
Query 54 CCCTAGTATTCAGCTTTTTGTGCACTGATCCAACTCGACTCGGCCTTTTTCTCTGAGTTG 113
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CCCTAGTATTCAGCTTTTTGTGCACTGATCCAACTCGACTCGGCCTTTTTCTCTGAGTTG 120
Query 114 ACTCGACCGAG------A---A-AAGGCGATAGAGCTGGGGTTTAATTCGGCGATAACAA 163
||||| ||||| | | ||||||||| ||||||||||| ||| |||||||||||
Sbjct 121 ACTCGGCCGAGTTTTATAGCGAGAAGGCGATATAGCTGGGGTTTGATTTGGCGATAACAA 180
Query 164 TGGACGAAGATTCCGTCC---ATGGCGATTCTCACCTCAAGACATGTGTCGTCCTCGGCG 220
|||||||||||||||||| ||| ||||||||||||||||||||||||||||| ||||
Sbjct 181 TGGACGAAGATTCCGTCCGTGGTGGAGATTCTCACCTCAAGACATGTGTCGTCCTTGGCG 240
Query 221 GACGAGGGTTCATTGGTCGATCGCTTGTCTCCAGATTGCTTCGTCTCGGAAACTGGACAG 280
| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 241 GCCGAGGGTTCATTGGTCGATCGCTCGTCTCTAGATTGCTTCGTCTCGGAAACTGGACAG 300
Query 281 TCCGAGTCGCAGATTCCGGTCACACTCTCCATCTTGATGAATCCGATTCGCTCCTCGAGG 340
|||| ||||| |||||||||||||||||||||||||| |||||||||||| ||||||| |
Sbjct 301 TCCGTGTCGCTGATTCCGGTCACACTCTCCATCTTGACGAATCCGATTCGGTCCTCGACG 360
Query 341 ATGCTCTCTCCTCCGGCCGCGCTTCTTATCACTGCGTCGATGTTCGTGATAAACCTCAGA 400
||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 361 ATGCTCTCTCCTCCGGCCGTGCTTCTTATCACTGCGTTGATGTTCGTGATAAACCTCAGA 420
Query 401 TCGTTAAAGTTACCGAGGGTTCCTATGTTGTATTTTACATGGGAGCTACTGATTTACGTT 460
||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| ||
Sbjct 421 TCGTTAAAGTTACGGAGGGTTCCTATGTTGTGTTTTACATGGGAGCTACTGATTTACATT 480
Query 461 CCCATGATTACTTTGACTGCTACAAGGTTATAGTTCAAGGTACAAGAAATGTGATTTCTG 520
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 CCCATGATTACTTTGACTGCTACAAGGTTATAGTTCAAGGTACAAGAAATGTGATTTCTG 540
Query 521 CCTGTCGTGAATCTGGAGTCAGAAAACTTATCTACAACAGTACAGCTGATGTTGTTTTTG 580
| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 CTTGTCGTGAGTCTGGAGTCAGAAAACTTATCTACAACAGTACAGCTGATGTTGTTTTTG 600
Query 581 ATGGTTCCCAACCTATACGTGATGGTGATGAATCCTTGAGACGTCCTTTGAAGTTCCAAT 640
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 601 ATGGTTCCCAACCTATACGTGATGGTGATGAATCCTTGAGACGCCCTTTGAAGTTCCAAT 660
Query 641 CTATGTTGACAGACTTCAAAGCTCAAGCAGAAGCGTTGATCAAATTGGCTAACAACCGAG 700
| ||| |||||||||||||||||||||| ||| | ||||||||||| || |||||||| |
Sbjct 661 CCATGCTGACAGACTTCAAAGCTCAAGCGGAATCTTTGATCAAATTTGCAAACAACCGTG 720
Query 701 ATGGTCTCTTAACTTGTGCACTTCGCTCTAGCATTGTATTTGGACCTGGTGACACAGAGT 760
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 ATGGTCTCTTAACTTGTGCACTTCGCTCTAGCATTGTATTTGGACCTGGTGACACAGAGT 780
Query 761 TTGTACCTTTTTTGGTGAATCTAGCCAAGTCCGGATATGCAAAGTTTATACTCGGGAGTG 820
|||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 781 TTGTACCTTTCCTGGTGAATCTAGCCAAGTCCGGATATGCAAAGTTTATAATCGGGAGTG 840
Query 821 GTGAAAATATCTCTGATTTCACTTACTCGGAGAACGTTTCTCATGCACATATTTGCGCCG 880
|||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 841 GTGAAAATATGTCTGATTTCACTTACTCAGAGAACGTTTCTCATGCACATATTTGCGCCG 900
Query 881 TTAAAGCATTAGATTCACAGATGGAGTTTGTGGCTGGAAAGGAATTTTTTATCACAAACC 940
| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 901 CTGAAGCATTAGATTCACAGATGGAGTTTGTGGCTGGAAAGGAATTTTTTATTACAAATC 960
Query 941 TCAAGCCGGTCAGATTTTGGGACTTTGTAAGCCATATAGTTGAAGGTCTGGGATACCCAA 1000
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 961 TCAAGCCGGTCAGATTTTGGGACTTTGTAAGCCACATAGTTGAAGGTCTGGGATATCCAA 1020
Query 1001 GACCATCCATTAAACTTCCTGTTCGGCTGGTTTTGTATGTTTTCTCACTTCTTAAGTGGA 1060
||||||||||||| |||||||||||||||||||||| |||||||||||||||||| ||||
Sbjct 1021 GACCATCCATTAAGCTTCCTGTTCGGCTGGTTTTGTTTGTTTTCTCACTTCTTAAATGGA 1080
Query 1061 CACATGAAAAGGAGGGCCTTGGGAGTAATTATGACACAGCACATCAGTATGCTCTGTTAG 1120
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1081 CACATGAAAAGGAGGGCCTTGGGAGTAATTATGACACAGCTCATCAGTATGCTCTGTTAG 1140
Query 1121 CTTCATCAACGAGAACTTTTAACTGCAATGCAGCTAAGAAGCATCTTGGTTACACACCTG 1180
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1141 CTTCATCGACGAGAACTTTTAACTGCAATGCAGCTAAGAAGCATCTTGGTTACACACCTG 1200
Query 1181 TTGTGACACTTGAAGATGGTATTGCATCAACGCTTCAATGGTTCTCTCGGGATCTTGAGA 1240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1201 TTGTGACACTTGAAGATGGTATTGCATCAACGCTTCAATGGTTCTCTCGGGATCTTGAGA 1260
Query 1241 AGTCTGATGACACAATCATTCAATCTACTGCAGATCAGCTTCTTGGTTGTGGGAAAGTTG 1300
|||| ||| ||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 1261 AGTCCGATTACACAATCACTCCATCTACTGCAGATCAGCTTCTTGGTTGTGGGAAAGTTG 1320
Query 1301 CAGACATCTTGCTGTGGAGAAATGAGAAGAAAACCTTCGTTTCTTTTCTTGTCCTAAACT 1360
|||||||||||||||||||||||||||||||||||||||||||||| ||| |||| ||||
Sbjct 1321 CAGACATCTTGCTGTGGAGAAATGAGAAGAAAACCTTCGTTTCTTTCCTTTTCCTCAACT 1380
Query 1361 TGTTTTATTACTGGTTCTTCTTTTCTGGAAACACATTTACTTCATCTGCAGCCCAACTTC 1420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1381 TGTTTTATTACTGGTTCTTCTTTTCTGGAAACACATTTACTTCATCTGCAGCCCAACTTC 1440
Query 1421 TGTTTATATTTGCTGTTGCTCTCTATGGAGTCT-CTTTTGTGCCGTCAAAGATTTTCGGG 1479
||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct 1441 TGTTTATATTTGCTGTTGCTCTCTATGGAGT-TGCTTTTGTGCCGTCAAAGATTTTCGGG 1499
Query 1480 TTTCAAGTCAACAAAATACCCCCATGGAGATTTGAGATCTCCGAATCCGCTGTGAGAGAT 1539
||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1500 TTTCAAGTCAAGAAAATACCCCCATGGAGATTTGAGATCTCGGAATCCGCTGTGAGAGAT 1559
Query 1540 CTTAGTAGTGATATCGTAGTTGTCTGGAATCAAGGAGTTCGCAG-TTTTAAATCCTTAAG 1598
|||||||| ||||||||||||||||||||||| |||||||| || |||||||||||||||
Sbjct 1560 CTTAGTAGAGATATCGTAGTTGTCTGGAATCAGGGAGTTCG-AGGTTTTAAATCCTTAAG 1618
Query 1599 CAGTGGAGGAGACTGGATCAAGTTCTTCAAGATTGCAGGATCACTGTATCTCCTCAAACT 1658
||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1619 CAGAGGAGGAGACTGGATCAAGTTCTTCAAGATTGCAGGATCACTATATCTCCTCAAACT 1678
Query 1659 GATTGTATCCCGTTCATTGGCAGCATTTCTTTTCACAGTTATGTCGTTCTCATTCACCGG 1718
||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 1679 GATCGTATCCCGTTCATTGGCTGCATTTCTTTTCACAGTGGTGTCGTTCTCATTCACCGC 1738
Query 1719 TTTCTTCATCTACGAGCAATACGAGCTTGAGCTCTACCACCTAGCCCGGATATTCGTCGA 1778
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1739 TTTCTTCATCTACGAGCAATACGAGCTTGAGCTCTACCACCTAGCCCGGATCTTCGTCGA 1798
Query 1779 ATGCTTAACATTTATTAAAAGGATGGTGATACCTGTTTCTGATGCTTCATCTAAACCAAT 1838
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1799 ATGCTTAACAGTTCTTAAAAGGATGGTGATACCTGTTTCTGATGCTTCATCTAAACCAAT 1858
Query 1839 GTTCATGTGAAGCTTCCAAAGTC 1861
|||||||||||||||||||||||
Sbjct 1859 GTTCATGTGAAGCTTCCAAAGTC 1881
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77970731515
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5