BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G43445.1
Length=1335
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483455 jgi|Araly1|483455|fgenesh2_kg.4__2515__AT2G43445.1 1378 0.0
Ahg901608 jgi|Araly1|901608|Al_scaffold_0004_2258 189 5e-47
> Ahg483455 jgi|Araly1|483455|fgenesh2_kg.4__2515__AT2G43445.1
Length=1067
Score = 1378 bits (746), Expect = 0.0
Identities = 984/1095 (90%), Gaps = 32/1095 (3%)
Strand=Plus/Plus
Query 1 CCACGACGACAGACAAAACATAAAAGATGGAGGAAGAAAGAGAAAACACTAACTCTATCT 60
||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||
Sbjct 1 CCACGACGACAGACAAAACATAAAAGATGGAGGAAGAAAGAAAAAACACTAACTCGATCT 60
Query 61 ACATAGTTTCCGAGCTACTTGAAGAAATTTTCCTTGGATTGCCTTTGAAATCAATCCTCA 120
|||||||| |||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 61 ACATAGTTCCCGAGCTACTGGAAGAAATTTTCCTTGGATTGCCGTTGAAATCAATCCTCA 120
Query 121 AATTCAAAACCGTCTCAAAACAATGGAGATCAATCCTGGAATCGAACTTGTTCGTGGAGA 180
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 121 GATTCAAAACCGTCTCAAAACAATGGAGATCAATCCTGGAATCGAAGTTGTTCGTGGAAA 180
Query 181 GGCGTAGAACTCTTCAAAAGAACCACCCGAAAATCCTGGCTGCTTATAACTGCGACTACT 240
||||||| |||||||||||||||| || ||||||||||||||| || |||||| ||||||
Sbjct 181 GGCGTAGGACTCTTCAAAAGAACCGCCGGAAAATCCTGGCTGCGTACAACTGCAACTACT 240
Query 241 GCACGCGGCCGGGTATCCTCCCTAAGTCTCAGTTCGAAGGGGACGAAGAGATCGTTTATC 300
||| ||||||| |||||| |||| |||||| |||||||||||| ||||||||||||||||
Sbjct 241 GCAGGCGGCCGAGTATCCACCCTGAGTCTCGGTTCGAAGGGGATGAAGAGATCGTTTATC 300
Query 301 TTCA-TACCGACGCCACGCAACCCTCGATGACTTGCGACGGTTTAGTCTGCATCACCGAA 359
| || | ||| ||| ||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 301 TGCACT-GCGAGGCCGCGCAACCCTCGATGACTTGCGACGGTTTAGTATGCATCACCGAA 359
Query 360 CCTGGTTGGTTCAACGTTTTGAACGTCTCCACCGGACAACTCCGAAGATTTCTACCCGGT 419
||| |||||||||||||||||||| |||||||||||||||||| |||| | || |
Sbjct 360 CCTAGTTGGTTCAACGTTTTGAACCCCTCCACCGGACAACTCCGGCGATTCCCACTAAAT 419
Query 420 CCAGA--TCCAGGACCGCAAGCAAATTGGCTCTTGGGATTCGGTAGAGACAAAGTTACGG 477
||| | ||||| |||||| ||||||||| ||||||||||||||||||||||||||||
Sbjct 420 --AGATTTTCAGGAACGCAAGGAAATTGGCTTTTGGGATTCGGTAGAGACAAAGTTACGG 477
Query 478 GCAAGTATAAAATAGTGAGGATGTGTTTTCATGATTGTTATGAATTTGGGATTCTTGATA 537
|||||||||||||||||||| ||||||||| ||||| |||||||||||| ||||||||||
Sbjct 478 GCAAGTATAAAATAGTGAGGTTGTGTTTTCGTGATTTTTATGAATTTGGTATTCTTGATA 537
Query 538 TTGAATCTGGCGAATGGAGCAAACTGATGTCACCTCCTCATATAATGCGAGTGGGAAGTA 597
||||| |||| |||||||||||||||| | ||||| | | | | | ||| ||
Sbjct 538 TTGAAACTGGTGAATGGAGCAAACTGAGGACACCT-C-C---T--T-C-AGT-----GT- 582
Query 598 AATCGGTGTGTGTGAATGGATCAATCTACTGGTTACAAATTAGTGTGAGTTACATAATAC 657
| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 583 -A--------TGTGAATGGATCAATCTACTGGTTACAAATTAGTGCGAGTTACATAATAC 633
Query 658 TGGCCTTGGATCTTCACCAAGAAACG-TTCAATGGTGTCTACCACCTCCCGGCTACGTGG 716
| ||||||||||||||| |||||| | | | ||||| || ||||||| ||||||||||||
Sbjct 634 TAGCCTTGGATCTTCACAAAGAAA-GCTACTATGGTATCCACCACCTTCCGGCTACGTGG 692
Query 717 GTCACGCAAGATACCCAATTAGTGAACCTTGAGGACCGTCTAGCCATGGCCATGACGACC 776
|||||||| || ||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 693 GTCACGCAGGAAACCCAGTTAGTGAACCTTGAGGACCGTCTAGCCATTGCCATGACGACC 752
Query 777 AAAGTTGGGCCTGAATGGATACTAGAGATCTGGAGCATGGATATAGAAGAAAAAGGATGG 836
|||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 753 AAAGTTGGGCCTGAGTGGATACTAGAGATCTGGAGCATGGATATAGAAGGAAAAGGATGG 812
Query 837 AGCAAGCGTTACACATGGAGCAAGGCTTACTCCATAAGTTTAGCCCATAGAGTTGTTGTA 896
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 813 AGCAAGCGTTACTCATGGAGCAAGACTTACTCCATAAGTTTAGCCCATAGAGTTGTTGTA 872
Query 897 TCCTGGCCATGGCAAAAAAGGTGGTTCACGCCGGTATCGGTTTCTAAGCAAGGGAATCTT 956
||||||| |||||| | ||||||||||||||| || ||||||||||||||||||||||||
Sbjct 873 TCCTGGCTATGGCAGAGAAGGTGGTTCACGCCCGTGTCGGTTTCTAAGCAAGGGAATCTT 932
Query 957 GTCTTCTATGATAATCACAAGAGGCTGTTCAAATATTATTCAGGTACAGATGAGATTCGT 1016
||||||||||| ||| | |||||||||||||||||||||||||||| |||||||||||||
Sbjct 933 GTCTTCTATGACAATAAGAAGAGGCTGTTCAAATATTATTCAGGTAGAGATGAGATTCGT 992
Query 1017 TGTCTCTCCTCTAACATTAATGTTATATCTTCTTACGTTGAAAATTTGGCCCCACTTCCG 1076
|||||||||||||||||| |||||||||||||||| ||||||| |||| ||| ||||||
Sbjct 993 TGTCTCTCCTCTAACATTTGTGTTATATCTTCTTACCTTGAAAACTTGGTCCCTCTTCCG 1052
Query 1077 TTAAAACCAAGCCAT 1091
|||||||||||||||
Sbjct 1053 TTAAAACCAAGCCAT 1067
> Ahg901608 jgi|Araly1|901608|Al_scaffold_0004_2258
Length=630
Score = 189 bits (102), Expect = 5e-47
Identities = 253/322 (79%), Gaps = 26/322 (8%)
Strand=Plus/Plus
Query 27 ATGGAGGAAGAAAGAGAAAA-CACTAACTCTATCTACATAGTTTCCGAGCTACTT-GAAG 84
|||| ||||| |||| |||| | |||| || |||||||||||| |||| || || ||||
Sbjct 1 ATGGTGGAAG-AAGAAAAAAGCTCTAATTCGATCTACATAGTTCCCGAATTA-TTGGAAG 58
Query 85 AAATTTTCCTTGGATTGCCTTTGAAATCAATCCTCAAATTCAAAACCGTCTCAAAACAAT 144
||||||||||| ||||||| |||||| |||| ||||||||||||||||||||||||||||
Sbjct 59 AAATTTTCCTTCGATTGCCATTGAAACCAATTCTCAAATTCAAAACCGTCTCAAAACAAT 118
Query 145 GGAGATCAATCCTGGAATCGAACTTGTTCGTGGAGAGGCGTA-GAACT-CTTCAAAAGAA 202
|||||| | ||||||||||||| |||||||||| | ||||| ||| | ||||||| ||
Sbjct 119 GGAGATTAGTCCTGGAATCGAAAATGTTCGTGGAAAAGCGTATGAA-TGCTTCAAA-GAG 176
Query 203 CCACCCGAAAA-TCCTGGCTGCTTATAACTGCGACTACTGC-ACGCGGCCGGGTATCCTC 260
||||| | | |||||||| |||||||||| | || || |||||| | ||| ||
Sbjct 177 TG----GAAAAATAATAGCTGCTTACAACTGCGACTGCGGCGAC-CGGCCGAGAATCATC 231
Query 261 C-CTAAGTCTCAGTTCGAAGGGGACGAAGAGATCGTTTATCTTCA-TAC--CGACGCCAC 316
| | | | | | ||| | |||||| ||| | | || ||||| || | | | |||| ||
Sbjct 232 CACGAGGCC-CGGTT--A-GGGGACCAAGTGTTTGTCTATCTACACTGCTTCAACGC-AC 286
Query 317 GCAACCCTCGATGACTTGCGAC 338
| | |||||||||| |||||||
Sbjct 287 G-A-CCCTCGATGATTTGCGAC 306
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49941021270
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5