BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G43460.1

Length=600
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg935246 jgi|Araly1|935246|scaffold_403234.1                        412    1e-114
  Ahg486421 jgi|Araly1|486421|fgenesh2_kg.5__2413__AT3G59540.1         272    2e-72 


> Ahg935246 jgi|Araly1|935246|scaffold_403234.1
Length=253

 Score =  412 bits (223),  Expect = 1e-114
 Identities = 243/253 (96%), Gaps = 0/253 (0%)
 Strand=Plus/Plus

Query  88   GTTTCAACCAACAGATTCGAGAATGCCTAAGCAAATCCACGAGATCAAGGACTTCCTTCT  147
            |||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||
Sbjct  1    GTTTCAACCAACAGATCCGACAATGCCTAAGCAAATCCACGAGATCAAGGACTTCCTTCT  60

Query  148  GACAGCTAGAAGGAAAGATGCACGATCTGTGAAGATCAAGAGAAGCAAGGATATTGTCAA  207
            ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct  61   GACAGCTAGAAGGAAAGATGCACGATCAGTGAAGATCAAGAGAAGCAAGGATATTGTCAA  120

Query  208  GTTTAAGGTCAGATGCTCGAGGTACCTCTACACGCTCTGCGTCTTTGACCAAGAGAAAGC  267
            ||||||||||||||| ||||||||||||||||| || |||||||||||||||||||||||
Sbjct  121  GTTTAAGGTCAGATGTTCGAGGTACCTCTACACTCTTTGCGTCTTTGACCAAGAGAAAGC  180

Query  268  CGACAAGCTTAAGCAGTCTCTTCCTCCAGGTTTGAGTGTACAAGACCTTTGAAGATGAAG  327
            ||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||
Sbjct  181  CGACAAGCTTAAGCAGTCTCTTCCTCCAGGTCTGAGTGTGCAAGACCTTTGAAGATGAAG  240

Query  328  CAAAGTTCTTCTG  340
            |||| || |||||
Sbjct  241  CAAACTTTTTCTG  253


> Ahg486421 jgi|Araly1|486421|fgenesh2_kg.5__2413__AT3G59540.1
Length=470

 Score =  272 bits (147),  Expect = 2e-72
 Identities = 200/226 (88%), Gaps = 2/226 (1%)
 Strand=Plus/Plus

Query  99   CAGATTCGAGAATGCCTAAGCAAATCCACGAGATCAAGGACTTCCTTCTGACAGCTAGAA  158
            ||||| ||| |||||| ||||||||||| || ||||||||||||||| |||| || ||||
Sbjct  84   CAGATCCGACAATGCCGAAGCAAATCCATGAAATCAAGGACTTCCTTTTGACGGCGAGAA  143

Query  159  GGAAAGATGCACGATCTGTGAAGATCAAGAGAAGCAAGGATATTGTCAAGTTTAAGGTCA  218
            |||| |||||| | |||||||||||||||||||||||||| ||||| ||||| |||||||
Sbjct  144  GGAAGGATGCAAGGTCTGTGAAGATCAAGAGAAGCAAGGACATTGTGAAGTTCAAGGTCA  203

Query  219  GATGCTCGAGGTACCTCTACACGCTCTGCGTCTTTGACCAAGAGAAAGCCGACAAGCTT-  277
            | ||||| |||||||||||||| || || ||||| ||||||||||| || || ||| || 
Sbjct  204  GGTGCTCAAGGTACCTCTACACACTATGTGTCTTCGACCAAGAGAAGGCTGATAAG-TTG  262

Query  278  AAGCAGTCTCTTCCTCCAGGTTTGAGTGTACAAGACCTTTGAAGAT  323
            ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct  263  AAGCAGTCTCTTCCTCCAGGTTTGAGTGTGCAAGACCTTTGAAGAT  308



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21977619264


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5