BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G43460.1 Length=600 Score E Sequences producing significant alignments: (Bits) Value Ahg935246 jgi|Araly1|935246|scaffold_403234.1 412 1e-114 Ahg486421 jgi|Araly1|486421|fgenesh2_kg.5__2413__AT3G59540.1 272 2e-72 > Ahg935246 jgi|Araly1|935246|scaffold_403234.1 Length=253 Score = 412 bits (223), Expect = 1e-114 Identities = 243/253 (96%), Gaps = 0/253 (0%) Strand=Plus/Plus Query 88 GTTTCAACCAACAGATTCGAGAATGCCTAAGCAAATCCACGAGATCAAGGACTTCCTTCT 147 |||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1 GTTTCAACCAACAGATCCGACAATGCCTAAGCAAATCCACGAGATCAAGGACTTCCTTCT 60 Query 148 GACAGCTAGAAGGAAAGATGCACGATCTGTGAAGATCAAGAGAAGCAAGGATATTGTCAA 207 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 61 GACAGCTAGAAGGAAAGATGCACGATCAGTGAAGATCAAGAGAAGCAAGGATATTGTCAA 120 Query 208 GTTTAAGGTCAGATGCTCGAGGTACCTCTACACGCTCTGCGTCTTTGACCAAGAGAAAGC 267 ||||||||||||||| ||||||||||||||||| || ||||||||||||||||||||||| Sbjct 121 GTTTAAGGTCAGATGTTCGAGGTACCTCTACACTCTTTGCGTCTTTGACCAAGAGAAAGC 180 Query 268 CGACAAGCTTAAGCAGTCTCTTCCTCCAGGTTTGAGTGTACAAGACCTTTGAAGATGAAG 327 ||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| Sbjct 181 CGACAAGCTTAAGCAGTCTCTTCCTCCAGGTCTGAGTGTGCAAGACCTTTGAAGATGAAG 240 Query 328 CAAAGTTCTTCTG 340 |||| || ||||| Sbjct 241 CAAACTTTTTCTG 253 > Ahg486421 jgi|Araly1|486421|fgenesh2_kg.5__2413__AT3G59540.1 Length=470 Score = 272 bits (147), Expect = 2e-72 Identities = 200/226 (88%), Gaps = 2/226 (1%) Strand=Plus/Plus Query 99 CAGATTCGAGAATGCCTAAGCAAATCCACGAGATCAAGGACTTCCTTCTGACAGCTAGAA 158 ||||| ||| |||||| ||||||||||| || ||||||||||||||| |||| || |||| Sbjct 84 CAGATCCGACAATGCCGAAGCAAATCCATGAAATCAAGGACTTCCTTTTGACGGCGAGAA 143 Query 159 GGAAAGATGCACGATCTGTGAAGATCAAGAGAAGCAAGGATATTGTCAAGTTTAAGGTCA 218 |||| |||||| | |||||||||||||||||||||||||| ||||| ||||| ||||||| Sbjct 144 GGAAGGATGCAAGGTCTGTGAAGATCAAGAGAAGCAAGGACATTGTGAAGTTCAAGGTCA 203 Query 219 GATGCTCGAGGTACCTCTACACGCTCTGCGTCTTTGACCAAGAGAAAGCCGACAAGCTT- 277 | ||||| |||||||||||||| || || ||||| ||||||||||| || || ||| || Sbjct 204 GGTGCTCAAGGTACCTCTACACACTATGTGTCTTCGACCAAGAGAAGGCTGATAAG-TTG 262 Query 278 AAGCAGTCTCTTCCTCCAGGTTTGAGTGTACAAGACCTTTGAAGAT 323 ||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 263 AAGCAGTCTCTTCCTCCAGGTTTGAGTGTGCAAGACCTTTGAAGAT 308 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 21977619264 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5