BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G43465.1
Length=1420
Score E
Sequences producing significant alignments: (Bits) Value
Ahg322019 jgi|Araly1|322019|fgenesh1_pm.C_scaffold_4002076 1040 0.0
Ahg934640 jgi|Araly1|934640|scaffold_402628.1 377 1e-103
> Ahg322019 jgi|Araly1|322019|fgenesh1_pm.C_scaffold_4002076
Length=1488
Score = 1040 bits (563), Expect = 0.0
Identities = 614/639 (96%), Gaps = 2/639 (0%)
Strand=Plus/Plus
Query 584 TTCACCAATATGCATCCTTTTACGAGCTGTTGAAAGCCGAGAGTTCAGAGAAAGTGTTTC 643
||||||||||| ||| |||||||||||||||||||| |||||||||| ||||||||||||
Sbjct 851 TTCACCAATATCCATTCTTTTACGAGCTGTTGAAAGGCGAGAGTTCAAAGAAAGTGTTTC 910
Query 644 CTGGCACTAAAACAGTGGAAGAAGGTATGCAAATGTTTAGGAAGTTATATGATACGGATC 703
|||| ||||||||||||||||||||||||||||||||||||||||| ||||||| |||||
Sbjct 911 CTGGTACTAAAACAGTGGAAGAAGGTATGCAAATGTTTAGGAAGTTGTATGATATGGATC 970
Query 704 AAGAGAATTTCAATGGTGTTGTGGCAATCCATCTTAGTAAATCAGTTGCT-CAGCCTTGT 762
||||||||| ||||||||||||||||||| |||||||||||||||||| | |||||||||
Sbjct 971 AAGAGAATTCCAATGGTGTTGTGGCAATCAATCTTAGTAAATCAGTTG-TCCAGCCTTGT 1029
Query 763 GTTGCTTTGGCTCACATACTGTCTGGCTTGAGTTACACTGGCGTGCAAAACCTTCTCGGT 822
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1030 GTTGCTTTGGCTCACATACTGTCTGGCTTGAGTTACACTGGCGTTCAAAACCTTCTCGGT 1089
Query 823 CTATCTCACACAACTGGATCCATTTTTCATGCTCTGCCTCCTCCTAGATCGATGCTACTC 882
|||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1090 CTATCTCACACAACCGGATCCATTTTTCATGCTCTGCCTCCTCCAAGATCGATGCTACTC 1149
Query 883 TCTTCATTCATGCTTCCATATAAGCCAAAGATAAAAGGTTGTAGATTGAGCCATGGAGCT 942
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1150 TCTTCATTCATGCTTCCATATAAGCCAAAGATAAAAGGTTGTAGATTGAGCCATGGAGCT 1209
Query 943 AGAGCATTAGCCAAGCATGTTGATCGAAGTAGCGATGGATTTTGGGGTGTTCTTCAGGGA 1002
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 1210 AGAGCATTAGCCAAGCATGTTGATCGAAGTAGTGATGGATTTTGGGGTGTTCTTCAAGGA 1269
Query 1003 ACTGATTCAGATAAAAATGAGCGTGCAATGGACATAATCAATCGGTTCATTGGCAATTGT 1062
||||||||||||||||| || |||| |||||||| |||||||||||||||||| |||||
Sbjct 1270 TCTGATTCAGATAAAAATAAGTGTGCGATGGACATTATCAATCGGTTCATTGGCCATTGT 1329
Query 1063 TGTTGGATGAACATACATATCGTTCCACCACATGGTGAAGTGTTCGAGATAAGAGTAGCT 1122
|||||||||||| ||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 1330 TGTTGGATGAACGTACATATCGTTCCACCACACGGGGAAGTGTTCGAGATAAGAGTAGCT 1389
Query 1123 CAAGGCTATGGAGCACGTTGGTCTCGAGATGGAACCAAATTCATTGGATTTCTTGAGCCT 1182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1390 CAAGGCTATGGAGCACGTTGGTCTCGAGATGGAACCAAATTCATTGGATTTCTTGAGCCT 1449
Query 1183 TACATGGAGGATGGTCACTCCATGGCCTGGAAGCATTAA 1221
|||||||||||||||||||||||||||||||||||||||
Sbjct 1450 TACATGGAGGATGGTCACTCCATGGCCTGGAAGCATTAA 1488
Score = 468 bits (253), Expect = 6e-131
Identities = 320/353 (91%), Gaps = 1/353 (0%)
Strand=Plus/Plus
Query 61 AAAA-TTAGAGATTGTCTAGATGAAATGGTGAAGTTCACACTCGATTACTGTGTAGAATT 119
|||| | ||||||||| |||| || |||||||| ||||| || |||| | ||||||||||
Sbjct 495 AAAACTGAGAGATTGTTTAGAGGAGATGGTGAAATTCACTCTAGATTGCCGTGTAGAATT 554
Query 120 CGATATAGGGCTTACCGGGGAGTTCTGCTCCGGCCTTCTGTGCGGCGAATCAGTTCTTCA 179
|||| ||| ||| |||| || ||||||| |||||||| |||||||||||| ||||||
Sbjct 555 CGATTTAGAGCTCACCGATGATTTCTGCTTTGGCCTTCTTTGCGGCGAATCAATTCTTCT 614
Query 180 CGACGGTGAACGAATCGAATCGTCTTCCTACGCTTTGCTACACCGGTTTTCAGGTGTTCC 239
|||||||||||||||||||||||||||| |||||||||||||||| ||| |||||||||
Sbjct 615 CGACGGTGAACGAATCGAATCGTCTTCCCACGCTTTGCTACACCGATTTGGAGGTGTTCC 674
Query 240 TGATTATCCCTTGTACAAGGTTCTAGCTTTAGGTCTGCTGAAATCAATTGATTCTGGTTC 299
||||||||||||||||||| |||| ||||||||||||||||||||||| |||||||||||
Sbjct 675 TGATTATCCCTTGTACAAGCTTCTTGCTTTAGGTCTGCTGAAATCAATAGATTCTGGTTC 734
Query 300 TTTCTGTGGAACCTTTGAGAAAATTTCGTTGGGGAAGGAAGTAATCCGGTTGAAGGAGAA 359
| ||||||||||||||||||| ||||||||||||||||| |||||| ||||||||||||
Sbjct 735 TGTCTGTGGAACCTTTGAGAAGATTTCGTTGGGGAAGGAGGTAATCTGGTTGAAGGAGAG 794
Query 360 AGAAGATGAGTGGAGCAAGCTGATAAATCAAAAGGGTTCTGAGTTAGTCAATG 412
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 795 AGAAGATGAGTGGAGCAAGCTGATAAATCAAAAGGGTTCTGAGTTAGTCAATG 847
> Ahg934640 jgi|Araly1|934640|scaffold_402628.1
Length=434
Score = 377 bits (204), Expect = 1e-103
Identities = 325/380 (86%), Gaps = 21/380 (6%)
Strand=Plus/Plus
Query 35 TTTGCTCCAATTGAGT-GAAGAT-GATTAAAATTAGAGATTGTCTAGATGAAATGGTGAA 92
|||||||| ||||||| || || || || | | |||||||| ||||| || ||||||||
Sbjct 1 TTTGCTCCGATTGAGTAAAAAATGGA-TAGACTGAGAGATTGCCTAGAGGAGATGGTGAA 59
Query 93 GTTCACACTCGATTACTGTGTAGAATTCGATATAGGGCTTACCGGGGAGTTCTGCTCCGG 152
|||||||| |||| | |||||||||||||| ||| ||| |||| || ||||||| ||
Sbjct 60 ATTCACACTAGATTGCCGTGTAGAATTCGATTTAGAGCTCACCGATGATTTCTGCTTTGG 119
Query 153 CCTTCTGTGCGGCGAATCAGTTCTTCACGACGGTGAACGAATCGAATCGTCTTCCTACGC 212
|||||| |||||||||||| |||||| |||||||||||||||||||||||||||| ||||
Sbjct 120 CCTTCTTTGCGGCGAATCAATTCTTCTCGACGGTGAACGAATCGAATCGTCTTCCCACGC 179
Query 213 TTTGCTACACCGGTTTTCAGGTGTTCCTGATTATCCCTTGTACAAGGTTCTAGCTTTAGG 272
|||||||||||| ||| |||||||||||||||||||||||||||| |||| ||||||||
Sbjct 180 TTTGCTACACCGATTTGGAGGTGTTCCTGATTATCCCTTGTACAAGCTTCTTGCTTTAGG 239
Query 273 TCTGCTGAAATCAATTGATTCTGGTTCTTTCTGTGGAACCTTTGAGAAAATTTCGTTGGG 332
||||||||||||||||| |||||||||| ||||||||||||||||||| |||||||||||
Sbjct 240 TCTGCTGAAATCAATTGTTTCTGGTTCTGTCTGTGGAACCTTTGAGAATATTTCGTTGGG 299
Query 333 GAAGGAAGTAATCCGGTTGAAGGAGAAAGAAGATGAGTGGAGCAAGCTGATAAATCAAAA 392
|||||| | | | | | | | || ||||||||||||||| |||||||||||
Sbjct 300 GAAGGA-G-A----G----A-G-A-A--GA---TGAGTGGAGCAAGCTCATAAATCAAAA 341
Query 393 GGGTTCTGAGTTAGTCAATG 412
||||||||||||||||||||
Sbjct 342 GGGTTCTGAGTTAGTCAATG 361
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53097801530
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5