BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G43470.1

Length=719
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg891996 jgi|Araly1|891996|Al_scaffold_0007_3982                    180    1e-44


> Ahg891996 jgi|Araly1|891996|Al_scaffold_0007_3982
Length=477

 Score =  180 bits (97),  Expect = 1e-44
 Identities = 139/158 (88%), Gaps = 7/158 (4%)
 Strand=Plus/Plus

Query  453  CACAGACAACTTAGACCTTTTCAGAAAAATCCGGGAGAACATCAAAAGCCTTCTCAAAGA  512
            |||||| ||||| ||||||||||| ||||| |||||||||||||| |||||||||||| |
Sbjct  306  CACAGAAAACTTGGACCTTTTCAGCAAAATTCGGGAGAACATCAATAGCCTTCTCAAAAA  365

Query  513  TTTGAATGAGAATGTGTCGGAGACATGGAAG-AATATGCCATCATCATTGCCGGAGAAGT  571
            ||||||||||||||||||||||||||||||| || |||||| |  |||||||||||||||
Sbjct  366  TTTGAATGAGAATGTGTCGGAGACATGGAAGCAA-ATGCCA-C--CATTGCCGGAGAAGT  421

Query  572  TGAACGATGAACTATTTCT-TGGCCTAGATAAAGCAAT  608
            |||||||||| || ||| | ||  ||  ||||||||||
Sbjct  422  TGAACGATGAGCTCTTT-TGTGATCTCTATAAAGCAAT  458



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26457304398


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5