BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G43480.1
Length=1052
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483456 jgi|Araly1|483456|fgenesh2_kg.4__2516__AT2G43480.1 1657 0.0
> Ahg483456 jgi|Araly1|483456|fgenesh2_kg.4__2516__AT2G43480.1
Length=1035
Score = 1657 bits (897), Expect = 0.0
Identities = 989/1035 (96%), Gaps = 0/1035 (0%)
Strand=Plus/Plus
Query 4 TGAGATGGTTATGATTCATATCTTCCTCACCGTGATGGTGGTTGGAGGCGTCAGTCTCTT 63
|||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||
Sbjct 1 TGAGATGGTTATGATTCATATCTTCCTCACCGCGATGGTGGTTGGAGGCGTTAGTCTCTT 60
Query 64 CCCGGAGACGGCAGAAGCGATCGTGATGGGACCGTCGATGCAGAAGCTGACGTGGCATTA 123
|||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||
Sbjct 61 CCCGGAGACGGCAGAAGCGACCGTGATGGGACCGTCGATGCAGAAGCTTACGTGGCATTA 120
Query 124 CTATAAAGTTTACAACACTTGCGAGAATGCAGAGAATTTTGTGAGGCACCAAGTTGAGAT 183
||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 121 CTACAAAGTTTATAACACTTGCGAGAATGCAGAGAATTTTGTGAGGCACCAAGTTGAAAT 180
Query 184 ATTTTACAAGAACGATAAAAGTATTGCTCCTAAGCTCCTTCGTCTCCTCTACTCAGACTG 243
|||||||||||||||||||||||||||||| |||||||||||||| || ||||| || ||
Sbjct 181 ATTTTACAAGAACGATAAAAGTATTGCTCCCAAGCTCCTTCGTCTACTTTACTCCGATTG 240
Query 244 CTTTGTTTCCGGATGCGATGCATCAGTTCTTCTAGAAGGTCCAAACTCAGAGAAAATGGC 303
|||||| ||||||||||||||||||||||| ||||||||||| |||||||||| ||||||
Sbjct 241 CTTTGTCTCCGGATGCGATGCATCAGTTCTACTAGAAGGTCCGAACTCAGAGAGAATGGC 300
Query 304 GCCACAAAACAGAGGACTTGGAGGATTCGTTCTCATAGACAAAATCAAAATAGTCTTGGA 363
|||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 301 GCCACAAAACAGAGGACTTGGAGGATTCGTGCTTATAGACAAAATCAAAATAGTCTTGGA 360
Query 364 ACAGAGATGTCCTGGTGTTGTCTCTTGCGCCGACATTCTTAATCTTGCAACTCGTGATGC 423
||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 361 ACAAAGATGTCCCGGTGTTGTCTCTTGCGCCGACATTCTTAATCTTGCAACTCGGGATGC 420
Query 424 TGTTCATTTGGCGGGTGCACCATCTTATCCTGTGTTCACAGGCAGGAGAGATGGTTTGAC 483
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 TGTTCATTTGGCAGGTGCACCATCTTATCCTGTGTTCACAGGCAGGAGAGATGGTTTGAC 480
Query 484 GTCTGATAAGCAAACCGTGGACCTACCATCGCCATCCATCTCATGGGACCAAGCCATGTC 543
|| |||||||| ||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 481 CTCGGATAAGCACACCGTGGACCTACCATCGCCATCCATCTCATGGAACCAAGCCATGTC 540
Query 544 TTATTTCAAATCCAGAGGCTTGAATGTTCTTGACATGGCTACACTTCTAGGATCACATTC 603
||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||
Sbjct 541 TTATTTCAAATCCAGAGGCTTGAGTGTTCTTGATATGGCTACACTTCTAGGATCACATTC 600
Query 604 AATGGGGAGAACACATTGCAGCTATGTTGTTGATCGACTCTACAATTACAACAAGACCGG 663
|||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 601 AATGGGAAGAACACATTGCAGCTATGTCGTTGATCGACTCTACAATTACAACAAGACCGG 660
Query 664 TAAACCAAGCCCTACTATGAACAAGTATTTCCTATCTGAAATGGCAAAGCAATGTCCTCC 723
|||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 661 TAAACCAAGCCCGACTATGAACAAGTATTTCCTGTCTGAAATGGCAAAGCAATGTCCTCC 720
Query 724 AAGAACGAGGAAAGGCCAGACCGATCCGCTCGTGTACCTAAACCCGGACTCAGGCTCAAA 783
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 721 AAGAACGAGGAAAGGCCAGACCGATCCGCTAGTGTACCTAAACCCGGACTCAGGCTCAAA 780
Query 784 CCACAGCTTCACAAGCTCATTTTACTCAAGAATTCTATCAAACAAATCTGTACTTGAAGT 843
|||||||||||||| |||||| || |||||||||||||||||||||||||||||||||||
Sbjct 781 CCACAGCTTCACAAACTCATTCTATTCAAGAATTCTATCAAACAAATCTGTACTTGAAGT 840
Query 844 AGATCAACAACTGCTTTACAATGATGACACCAAGCAAATATCTAAGGAATTCTCAGAGGG 903
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
Sbjct 841 AGATCAACAACTGCTTTACAATGTTGACACCAAGCAAATATCTAAGGAATTCTCAGAGAG 900
Query 904 TTTCGAGGATTTTCGGAAATCATTTGCTCTTTCGATGAGCAAGATGGGAGCGATAAATGT 963
||| |||||||| ||||||||||||||||||||||| |||||| ||||||||||||||||
Sbjct 901 TTTTGAGGATTTCCGGAAATCATTTGCTCTTTCGATTAGCAAGGTGGGAGCGATAAATGT 960
Query 964 GTTAACTAAAACGGAAGGTGAGATACGAAAAGATTGCAGGCATATAAACTAAACACAAAA 1023
|||||||||||| |||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 961 GTTAACTAAAACAGAAGGTGAGATACGAAAAGATTGCAGGCGTAGAAACTAAACACAAAA 1020
Query 1024 GCACAATCTCTCTCT 1038
|||| ||||||||||
Sbjct 1021 GCACTATCTCTCTCT 1035
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39152235759
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5