BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G43490.1
Length=2852
Score E
Sequences producing significant alignments: (Bits) Value
Ahg935251 jgi|Araly1|935251|scaffold_403239.1 3975 0.0
Ahg486423 jgi|Araly1|486423|fgenesh2_kg.5__2415__AT3G59570.1 1461 0.0
> Ahg935251 jgi|Araly1|935251|scaffold_403239.1
Length=2380
Score = 3975 bits (2152), Expect = 0.0
Identities = 2308/2383 (97%), Gaps = 12/2383 (1%)
Strand=Plus/Plus
Query 15 gagacgagaagaAC--aaaaaaaaaaaGGAAGAAAACTTTGCGTGGATGAAAAAATGGAG 72
|||||||||||||| |||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 2 GAGACGAGAAGAACAAAAAAAAAAAAAGGAAG-AAACTTTGCGTCGATGAAAAAATGGAG 60
Query 73 ATCGGAGAAGAAAATTCTCGATGACCATTGACCTTC---AGAGTTGGGAAGTGAGGACTG 129
||||||||||||||| |||||||||||||||| ||| |||||||||||||||||||||
Sbjct 61 ATCGGAGAAGAAAATCCTCGATGACCATTGACATTCAGAAGAGTTGGGAAGTGAGGACTG 120
Query 130 ATGTGTTCTGGTGGAGAAGGAAAACAATGGAGCTGTGGAAAAGCGGGTGTAGTGAGTTTG 189
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 ATGTGTTCTGGTGGAGAAGGAAAACAATGGAGCTGTGGAAAAGCGGGTGTAGTGAGTTTG 180
Query 190 CAGAAAGTTGGATCTTTGGTTCGAGATTTGAGCGAGCCTTGTCTTTCACAGTCACGGATA 249
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 181 CAGAAAGTTGGATCTTTGGTTCGAGATTTGAGCGAGCCTTGTCTTTCACAATCGCGGATA 240
Query 250 CAGGTTGTTATAACTATCGGCAAAATGCTTAAGCCAGAGAAGTGGCAAGCGTCTTTTGAT 309
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CAGGTTGTTATAACTATCGGCAAAATGCTTAAGCCAGAGAAGTGGCAAGCGTCTTTTGAT 300
Query 310 AGCGACGGAAGAGTTTCTGGTTTCCAGAAGGCGCTTAAATTAATTATTTTAGGGGGAATC 369
||||| |||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 301 AGCGATGGAAGAGTTTCTGGTTTCCAAAAGGCGCTTAAATTAATTATTTTGGGGGGAATC 360
Query 370 GACCCATCTATTAGAGCTGAAGTTTGGGAATTTCTCCTTGGTTGTTATGCGTTGAGCAGC 429
||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 361 GACCCGTCTATTAGAGCTGAAGTTTGGGAATTTCTCCTTGGTTGTTATGCGTTGGGCAGC 420
Query 430 ACCTCTGAGTACCGTAATCAACTCAGGGTAGCTCGAAGGAAGCGATACAATGATTTGCTC 489
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 421 ACCTCTGAGTACCGTAATCAACTCAGGGTAGCTCGAAGGAAGCGATATAATGATTTGCTC 480
Query 490 AAGCAATGCCAGACGATGCATTCAAGTGTGGGAACTGGTTCACTTGCCTATGTTGTGGGA 549
|||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 481 AAGCAATGTCAGACGATGCATTCAAGTGTGGGAACTGGTTCACTTGCCTATGTCGTGGGT 540
Query 550 TCTAAAGTTATGGATATGCGGAAATCTTATAGAGATGAGGCAGTAAAGGTTGCTACTACA 609
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 541 TCTAAAGTTATGGATATGCGGAAATCTTATAGAGATGAGTCAGTAAAGGTTGCTACTACA 600
Query 610 GATGAAAACAGAGAAGATGCTTTTATAGATAATAATGATAATGCTAATACTGAAAATCAT 669
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 GATGAAAACAGAGAAGAAGCTTTTATAGATAATAATGATAATGCTAATACTGAAAATCAT 660
Query 670 CACAGTGATTGGAGTAATAATGGTACTGATACATCTCATTTACACAGAAGGGGAAGTTCT 729
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 661 CACAGTGATTGGAGTAATAATGGTACTGATACATCTCATGTACACAGAAGGGGAAGTTCT 720
Query 730 AGTGAGTCAGTTGATTTAGTAAGTGGAAGAGAAAGTCCGGAGAGCGTAGTATACAACACT 789
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 AGTGAGTCAGTTGATTTAGTAAGTGGAAGAGAAAGTCCGGAGAGCGTAGTATACAACACT 780
Query 790 TCCTCCTTTGTATCTGCCTCTAGTCCTTATGGCTATGCTTCCCCTGACGGTTATTTCGAC 849
|||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||
Sbjct 781 TCCTCCTTTGTATCTGCCTCTAGTCCATATGGCTTTGCTTCCCCTGACGGTTATTTCGAC 840
Query 850 TTTCCCTCGCTACCGGTTACAGATTTGTTTGGGAGAAATAGTTTAGATAAGATTGAGGTT 909
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 841 TTTCCCTCGCTACCGGTTACAGATTTGTTTGGGAGGAATAGTTTAGATAAGATTGAGGTT 900
Query 910 TCTACGCCAGATGAGGATGCTTCACTGAAAAGTGAATTAAGATCTGAGGATGAGGGAATG 969
||||||||||| |||||||||||| |||||||||||||||||||||||||||||| ||||
Sbjct 901 TCTACGCCAGACGAGGATGCTTCATTGAAAAGTGAATTAAGATCTGAGGATGAGGCAATG 960
Query 970 CACAATTTTCGAATTGATAAGAATGCTGATTTAATTAGAGAACAACGTAGGTCCACTCCA 1029
||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct 961 CACAATTTTCGAATTGATAAGAATGCTGATTTAGTTAGAGAACAACGCAGGTCCACTCCA 1020
Query 1030 GAGATCAAAGTGATGCATTC-GGATTCTGTTGGACCATCGTCTTATACTGGTCGCAATGC 1088
|||||| || ||||||| || || ||||||||||||||||||||||||||||||||||||
Sbjct 1021 GAGATCGAATTGATGCA-TCAGGGTTCTGTTGGACCATCGTCTTATACTGGTCGCAATGC 1079
Query 1089 AGAAATAGTTGATGGTCTGAGAATATCAGATGTCCCTGAAATGGCATCAGTAAAGGACAC 1148
|||||||||| ||||| ||| |||||||||||||||||||||||||||||| ||||| ||
Sbjct 1080 AGAAATAGTTAATGGTTTGACAATATCAGATGTCCCTGAAATGGCATCAGTGAAGGAGAC 1139
Query 1149 TCCCTCTCGTGTTGGGAATGTCACGGAAGATCGAGTGTCTGAATGGCTTTGGACTTTGCA 1208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1140 TCCCTCTCGTGTTGGGAATGTCACGGAAGATCGAGTGTCTGAATGGCTTTGGACTTTGCA 1199
Query 1209 TCGAATAGTTGTTGATGTGGTAAGGACGGATAGCCACCTTGAGTTTTATGAGGATCCAGG 1268
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1200 TCGAATAGTTGTTGATGTGGTAAGGACGGATAGCCACCTTGAGTTTTATGAGGATCCAGG 1259
Query 1269 AAATCTAGGAAGAATGTCGGATATCCTTGCGGTTTATGCTTGGGTTGATCCTGCAACTGG 1328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1260 AAATCTAGGAAGAATGTCGGATATCCTTGCGGTTTATGCTTGGGTTGATCCTGCAACTGG 1319
Query 1329 TTATTGCCAAGGAATGAGTGATTTAGTCTCTCCTTTCGTGGTTCTATTTGAAGATAATGC 1388
|||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1320 TTATTGTCAAGGAATGAGTGATTTAGTCTCTCCTTTCGTGGTTCTGTTTGAAGATAATGC 1379
Query 1389 TGATGCCTTCTGGTGCTTTGAAATGCTCATAAGAAGAACGCGTGCGAATTTCCAAATGGA 1448
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1380 TGATGCCTTTTGGTGCTTTGAAATGCTCATAAGAAGAACGCGTGCGAATTTCCAAATGGA 1439
Query 1449 GGGACCAACTGGGGTGATGGATCAATTGCAATCATTGTGGCACATATTGCAGATTACAGA 1508
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1440 GGGACCAACTGGGGTGATGGATCAATTGCAATCACTGTGGCACATATTGCAGATTACAGA 1499
Query 1509 TAAAGATATATTTTCCCACTTATCGCGTATTGGGGCTGAAAGTCTTCATTTTGCCTTCCG 1568
||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1500 TAAAGATATCTTTTCCCACTTATCGCGTATTGGAGCTGAAAGTCTTCATTTTGCCTTCCG 1559
Query 1569 GATGCTTTTAGTTCTGTTCCGACGGGAATTGTCTTTTAACGAAGCTCTCAGGATGTGGGA 1628
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1560 GATGCTCTTAGTTCTGTTCCGACGGGAATTGTCTTTTAACGAAGCTCTCAGGATGTGGGA 1619
Query 1629 GATGATGTGGGCAGCTGATTATGATGAATCTGTTACTGAAACTTTGGAGAATGATTGCTT 1688
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1620 GATGATGTGGGCAGCTGATTATGATGAATCTGTTGCTGAAACTTTGGAGAATGATTGCTT 1679
Query 1689 GGAGCCTTTGGTGATTCAGCTTCCAAGAAAATCTGAACCTGAGGTGAGTGAAGAAAT-GA 1747
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct 1680 GGAGCCTTTGGTGATTCAGCTTCCAAGAAAATCTGAACCTGAGGTGAGTGAAG-AATCGA 1738
Query 1748 TAGAGGATGGAATTGGTAATAGTACAAAGAGGGAACCAATGATTTCAAAGAGCGGGCCAA 1807
||||||||||||||||||||||||||||||||||||| | ||| |||||||| |||||||
Sbjct 1739 TAGAGGATGGAATTGGTAATAGTACAAAGAGGGAACCTACGATATCAAAGAGTGGGCCAA 1798
Query 1808 TTTCAAAGAGCAGCGGTTTGTTGTCAAGGAGCGGTTTGCTGCCGAAGAGTGGTCCGTTGC 1867
|||||||||| || |||||| |||| ||||||||||||||||||||||||||||||||||
Sbjct 1799 TTTCAAAGAGTAGTGGTTTGCTGTCGAGGAGCGGTTTGCTGCCGAAGAGTGGTCCGTTGC 1858
Query 1868 CAAAGACTGC-GGGTCCTTTCTCTGATGAGAGTGAGATAAAGTCAGCATCATCCTCGTAT 1926
|||||||||| ||| ||||||||||||||||||||||||||| ||||||||||||| |||
Sbjct 1859 CAAAGACTGCTGGG-CCTTTCTCTGATGAGAGTGAGATAAAGGCAGCATCATCCTCATAT 1917
Query 1927 CACTTTTGTGGGTTGACAAGAAGTCTTTGGTCAAGGAATGATAGAACAACACATGTCCCT 1986
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1918 CATTTTTGTGGGTTGACAAGAAGTCTTTGGTCAAGGAATGATAGAACAACACATGTCCCT 1977
Query 1987 TGTGTCGTTTCATCCATaaaaaaaGGGGATGATGCTCTTCCTGTCTTTTGTGTGGCGGCG 2046
||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1978 TGTGTAGTTTCATCCATTAAAAAAGGGGATGATGCTCTTCCTGTCTTTTGTGTGGCGGCG 2037
Query 2047 ATTTTAATCATGAATCGACATAAGATCATGAAAGAAACTCGCTCGATCGATGACATGATA 2106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2038 ATTTTAATCATGAATCGACATAAGATCATGAAAGAAACTCGCTCGATCGATGACATGATA 2097
Query 2107 CAGATCTTCAATGATAAGGTTCTTGTATTCCGCGTGAGAAGATGCATACGTACAGCCATG 2166
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 2098 CAGATCTTCAATGATAAGGTTCTTGTATTCCGCGTGAGAAGATGCATACGCACAGCCATG 2157
Query 2167 AAACTTCGTAGGAAATACATGTACAAGAGTCAGGTAATCAAGACTAAGAGTCACACTCAG 2226
|||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 2158 AAACTTCGTAGGAAATACATGTACAAGAGTCAGGTAATCAAGACCAAGAGCCACACTCAG 2217
Query 2227 TCTCAGAATCTCAACCAGGTTCATATCCAGCATCAAACCCATATGGAGAGCCAGAGGCCG 2286
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 2218 TCTCAGAATCTCAACCAGGTTCAAATCCAGCATCAAACCCATATGGAGAGCCAGAGACCG 2277
Query 2287 GAGGAGATTCAGAGCCATGGTGAGAACCAGAGCCAAACACCAAGTTTTCATCATAGTCCT 2346
|||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 2278 GAGGAGATTCAGAGTCATGGTGAGAACCAGAGCCAAACACCAAGTTTACATCATAGTCCT 2337
Query 2347 GCCACTCAGAATGGTGACTAGGCGGGATTCCACCTATAACAGT 2389
||||||||||||||||||||||| | |||||||||||||||||
Sbjct 2338 GCCACTCAGAATGGTGACTAGGCAGAATTCCACCTATAACAGT 2380
> Ahg486423 jgi|Araly1|486423|fgenesh2_kg.5__2415__AT3G59570.1
Length=2468
Score = 1461 bits (791), Expect = 0.0
Identities = 1503/1832 (82%), Gaps = 107/1832 (6%)
Strand=Plus/Plus
Query 126 ACTGATGTGTTCTGGTGGAGAAGGAAA-ACAATGGAGC-TGTGGAAAAGCGGGTGTAGTG 183
|||||||| |||||||||||| ||||| | |||||| | ||||| ||| | ||| | ||
Sbjct 258 ACTGATGTTTTCTGGTGGAGAGGGAAAGA-AATGGA-CTTGTGGGAAACCTGGTCTTGTA 315
Query 184 AGTTTGCAGAAAGT--TGG-ATCTTTGGTTCGAGATTTGAGCGAGCCTTGTCTTTCACAG 240
||| | || ||||| ||| ||||||| |||| ||| ||||| ||||||||||||||||
Sbjct 316 AGTCTACAAAAAGTGGTGGCATCTTTGCTTCGGGATCTGAGCCAGCCTTGTCTTTCACAA 375
Query 241 TCACGGATACAGGTTGTTATAACTATCGGCAAAATGCTTAAGCCAGAGAAGTGGCAAGCG 300
|| |||| || |||||| ||||||||||||||||||||||||| ||||| ||||| ||
Sbjct 376 TCTGGGATTCAAGTTGTTTTAACTATCGGCAAAATGCTTAAGCCTGAGAAATGGCAGGC- 434
Query 301 TCTTTT-GATAGCGACGG-AAGAGTTTCTGGTTTCCAGAAGGCGCTTAAATTAATTATTT 358
| |||| ||| |||| || ||| |||||||||||||| |||||||| |||||||||||||
Sbjct 435 TTTTTTCGATTGCGATGGAAAG-GTTTCTGGTTTCCACAAGGCGCTCAAATTAATTATTT 493
Query 359 TAGGGGGAATCGACCCATCTATTAGAGCTGAAGTTTGGGAATTTCTCCTTGGTTGTTATG 418
| |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 494 TGGGGGGAATCGACCCATCTATAAGAGCTGAAGTTTGGGAATTTCTCCTTGGCTGTTATG 553
Query 419 CGTTGAGCAGCACCTCTGAGTACCGTAATCAACTCAGGGTAGCTCGAAG-GAAGCGATAC 477
| ||| |||||||||||||||| |||| |||||||||||||||||||| ||| ||||||
Sbjct 554 CATTGGGCAGCACCTCTGAGTATCGTAGGCAACTCAGGGTAGCTCGAAGAGAA-CGATAC 612
Query 478 AATGATTTGCTCAAGCAATGCCAGACGATGCATTCAAGTGTGGGAACTGGTTCACTTGCC 537
||||| |||||||||||||||||| ||||||||| ||||||||||||||||||||||||
Sbjct 613 AATGAGCTGCTCAAGCAATGCCAGATGATGCATTCTAGTGTGGGAACTGGTTCACTTGCC 672
Query 538 TATGTTGTGGGATCTAAAGTTATGGATATGCGGAAATCTTATAGAGATGAGGCAGTAAAG 597
|||||||||||||||||||||||||||||||| ||||| || | | |||||| ||||||
Sbjct 673 TATGTTGTGGGATCTAAAGTTATGGATATGCGAAAATCATACAAAAATGAGGTTGTAAAG 732
Query 598 GTTGCTACTACAGATGAAAACAGAGAAGATGCTT-TTATAGATAATAATGATAATGCTAA 656
| |||| | ||||||| ||||| | | |||| || ||||| ||||| | | ||
Sbjct 733 GAAGCTA-T--AGATGAAGGCAGAG-A-A-GCTTGTT-TAGATGGTAATG---A-G--AA 779
Query 657 TACTGAAAATCATCACAGTGATTGGAGTAATAATGGTACTGATACATCTCATTTACACAG 716
|||||| |||| | | |||||||||||||||||| || | | ||||| | | |||||
Sbjct 780 CACTGAAGATCA-C-C-GTGATTGGAGTAATAATGACACCAACAAATCTCCTGTGCACAG 836
Query 717 AAGGGGAAGTTCTAGTGAGTCAGTTGATTTAGTAAGTGGAAGAGAAAGTCCGGAGAGCGT 776
||||||||| || |||||||||||||| |||||||| || || | | | ||
Sbjct 837 AAGGGGAAGCTCCAGTGAGTCAGTTGACCTAGTAAGT---CCTGATAG--C--ACA--GT 887
Query 777 AGTATACAACACTTCCTCC-TTTGTATCTGCCTCTAGTCCTTATGGCTATGCTTCCCCT- 834
| ||| || |||| |||| |||||| |||| || ||||| ||||||| | ||||||||
Sbjct 888 A-TAT-GAA-ACTT-CTCCTTTTGTACCTGCGTCCAGTCCATATGGCTTTCCTTCCCCTG 943
Query 835 G---A----C-G--GTTAT-TTCGACTTTCCCTCGCTACCGGTTACAGATTTGTTTGGGA 883
| | | | | ||| || ||||||||||| |||||||||||||||||||||||||
Sbjct 944 GTCCATTTGCAGATGATATCTTTGACTTTCCCTCTCTACCGGTTACAGATTTGTTTGGGA 1003
Query 884 GAAATAGTTTAGATAAGATTGAGG-TTTCTACGCCAGATGAGGATGCTTC-ACTGAAAAG 941
| | |||||||| |||| | || ||||||| |||||||| || |||| || | | ||
Sbjct 1004 GGAGTAGTTTAGGCAAGAAAG-GGATTTCTACTCCAGATGAAGAAACTTCAAC-GCATAG 1061
Query 942 TGAATTAAGATCTGAGGATGAGGGAATGCACAATTTTCGAATTGATAAGAATGCTGATTT 1001
||| |||||||| ||||||||| ||||||||| |||||||||| | || ||||| |||||
Sbjct 1062 TGACTTAAGATCGGAGGATGAGAGAATGCACAGTTTTCGAATTTACAATAATGCAGATTT 1121
Query 1002 AATTAGAGAACAACGTAGGTCCACTCCAGAGATCAAAGTGA-TG--CATTC-GGATTCTG 1057
| ||| ||||| | | ||| | || | | | ||| || | || || || || ||||
Sbjct 1122 AGTTATAGAACCGCATGGGT-C-TTCTA-ATAACAACGTAACTGTACA-TCATGAATCTG 1177
Query 1058 TTGGACCA-TCGTCTTATACTGGTC-GCAATG-CAGAAATAGTTGATGGTCTGAGAATAT 1114
|| || | | |||| || |||| | || | | |||| || ||||||||| |||||||||
Sbjct 1178 TT-GAAAAGTTGTCTCATTCTGG-CTGC-ACGTCAGAGATTGTTGATGGTTTGAGAATAT 1234
Query 1115 CAGATGTCCCTGAAATGGCATCAGTAAAG-GACACTCCCT-CTCGTGTTGGGAATGTCAC 1172
||||||||||||||| | | || | ||| || ||| ||| |||| | |||| ||| |
Sbjct 1235 CAGATGTCCCTGAAACGCCGTC-GGCAAGTGAGACT-CCTACTCGAGGTGGGTCTGTAAA 1292
Query 1173 GGAAGATCGAGTGTCTGAATGGCTTTGGACTTTGCATCGAATAGTTGTTGATGTGGTAAG 1232
| |||||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||
Sbjct 1293 GAAAGATCGAGTGTCTGAATGGCTTTGGACATTGCACCGAATAGTTGTTGACGTGGTAAG 1352
Query 1233 GACGGATAGCCACCTTGAGTTTTATGAGGATCCAGGAAATCTAGGAAGAATGTCGGATAT 1292
||| ||||||||||||||||| || ||||||||||||||||||||||||||||| |||||
Sbjct 1353 GACAGATAGCCACCTTGAGTTCTACGAGGATCCAGGAAATCTAGGAAGAATGTCAGATAT 1412
Query 1293 CCTTGCGGTTTATGCTTGGGTTGATCCTGCAACTGGTTATTGCCAAGGAATGAGTGATTT 1352
||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1413 CCTTGCGGTCTATGCTTGGGTTGATCCTGCAACTGGTTATTGCCAAGGAATGAGCGATTT 1472
Query 1353 AGTCTCTCC-TTTCGTGGTTCTATTTGAAGATAATGCTGATGCCTTCTGGTGCTTTGAAA 1411
||| ||||| ||| ||| |||| ||||||||||||||||| ||||| ||||| |||||||
Sbjct 1473 AGTGTCTCCATTT-GTGTTTCTTTTTGAAGATAATGCTGACGCCTTTTGGTGTTTTGAAA 1531
Query 1412 TGCTCATAAGAAGAACGCGTGCGAATTTCCAAATGGAGGGACCAACTGGGGTGATGGATC 1471
|||||||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||
Sbjct 1532 TGCTCATAAGAAGAACGCGTGCAAATTTCCAGATGGAGGGACCAACTGGAGTGATGGATC 1591
Query 1472 AATTGCAATCATTGTGGCACATATTGCAGATT-ACAGATAAAGATATATTTTCCCACTTA 1530
||||||||||| |||||| |||||||| | | ||||||||||| || ||||| ||| ||
Sbjct 1592 AATTGCAATCACTGTGGCGTATATTGCA-ACTCACAGATAAAGAAATGTTTTCACACCTA 1650
Query 1531 TCGCGTATTGGGGCTGAAAGTCTTCATTTTGCCTTCCGGATGCTTTTAGT-TCTGTTCCG 1589
|| |||||||| ||||| || ||||| ||||| ||||||||||| ||||| | |||| ||
Sbjct 1651 TCACGTATTGGTGCTGAGAGCCTTCACTTTGCGTTCCGGATGCTGTTAGTGT-TGTTTCG 1709
Query 1590 ACGGGAATTGTCTTTTAACGAAGCTCTCAGGATGTGGGAGATGATGTGGGCAGCTGATTA 1649
||| || |||||||||||||| ||||| ||||||||||||||||||||||| |||||||
Sbjct 1710 ACGAGAGTTGTCTTTTAACGAGGCTCTAAGGATGTGGGAGATGATGTGGGCTGCTGATTT 1769
Query 1650 TGATGAATCTGTTACTGAAACTTTGGAGAATGATTGCTTGGAGCCTTTGGT-GATTCAGC 1708
|||||| ||| || |||||||||| ||||| ||||||||| |||| ||||| | ||||||
Sbjct 1770 TGATGAGTCTTTTGCTGAAACTTTAGAGAAGGATTGCTTGAAGCCGTTGGTTG-TTCAGC 1828
Query 1709 TTCCAAGAAA-ATCTGAACCTGAGGTGAGTGA--AGAAATGATAGAGGATGGAATTGGTA 1765
|||||| || ||||| | ||| || | || | ||| ||||| ||||||| ||| |
Sbjct 1829 TTCCAA-AACGATCTGGAGTTGATATGGGGGACCATAAA--ATAGATGATGGAAATGGCA 1885
Query 1766 ATAGTACAAAGAGGGAACCAATGATTTCAAAGAGCGGGCC-AATTTCAAAGAGCAGCGGT 1824
|| |||||| | ||||||| || | ||||||| || || ||||||| |||| |
Sbjct 1886 CTACTACAAATTGTGAACCAAC--TT-CGAAGAGCGA-CCGAACTTCAAAGTGCAG---T 1938
Query 1825 TTGTTGTC-AAGGAGCGGTTTGCTGCC-GAAGAGTGGTCCGTTGCCAAAGACTGCGGGTC 1882
||||||| ||| |||||| | ||||| ||| |||||||| |||||||| |||| | ||
Sbjct 1939 CTGTTGTCCAAG-AGCGGTCTACTGCCAGAA-AGTGGTCCATTGCCAAAAACTG-G--TC 1993
Query 1883 CTTTCTCTGATGAGAGTGAGATAAAGTCAGCA 1914
| | |||||||| | || ||| ||| |||||
Sbjct 1994 CGCTGTCTGATGATACTGGGATGAAGCCAGCA 2025
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 107643032370
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5