BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G43500.1
Length=3239
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483462 jgi|Araly1|483462|fgenesh2_kg.4__2522__AT2G43500.1 4281 0.0
Ahg898914 jgi|Araly1|898914|Al_scaffold_0005_2880 702 0.0
Ahg908209 jgi|Araly1|908209|Al_scaffold_0002_1290 508 8e-143
> Ahg483462 jgi|Araly1|483462|fgenesh2_kg.4__2522__AT2G43500.1
Length=2963
Score = 4281 bits (2318), Expect = 0.0
Identities = 2799/3023 (93%), Gaps = 65/3023 (2%)
Strand=Plus/Plus
Query 207 ATGGAAAACCCTTTTGCTTCTAGAGAAAAGGGGTTTGGTAATTATTCAGATTTTCCAACA 266
||||||||||||||||| || ||||||||||| |||||||||||||||||| ||||||||
Sbjct 1 ATGGAAAACCCTTTTGCATCCAGAGAAAAGGGTTTTGGTAATTATTCAGATATTCCAACA 60
Query 267 GAACAAATGGATGGTTTAAGCTCAAACTTTGGTTCTGGCGTTAGGAATTTGATCTCTGAT 326
||||| ||||||||||||||| ||| |||||||||||||||||||| |||| ||||||||
Sbjct 61 GAACATATGGATGGTTTAAGCACAACCTTTGGTTCTGGCGTTAGGAGTTTGCTCTCTGAT 120
Query 327 GATATGTTCAACCCTTCCTCCGAGCTTATGAATTTCGACTCTTTGGCCGCATGGTGTAAC 386
|||||| ||||| ||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 121 GATATGCTCAACTCTTCCTCCGAGCTTATGAATTTCGACTCTTTTGCCGCATGGTGTAAC 180
Query 387 AGCCCTTCCGCTACTGATATATTGTTCGCCCAATATGGTCTGTCGAACTCCCAACCTATG 446
|||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||||
Sbjct 181 AGCCCTTCCGCTACTGATATCTTGTTCGCGCAATACGGTCTGTCGAACTCCCAACCTATG 240
Query 447 CCTTTTGGAGCTTTCACTTCATTTCATGTAGCTGACCCGAAGGCTACCAGTCTCACTCGT 506
|||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||
Sbjct 241 CCTTTTGGAGCTTTCACTTCATTTCATGCAGCTGAGCCGAAGGCTACCAGTCTCACTCGT 300
Query 507 TCGTTCTATGATTTGGAAAGCTCTTACTATGGTGAAGAAAGATCGTCAGCACAGGAAATG 566
|||||| |||||||||||||||||||||||||| ||||||||||||||| ||||||| ||
Sbjct 301 TCGTTCCATGATTTGGAAAGCTCTTACTATGGTCAAGAAAGATCGTCAGTACAGGAATTG 360
Query 567 AATTCTCAGTTTCATCGCTCTTCAGATAGCGATGAGTTAAGTGGTAAACGACGCAAGGTT 626
| ||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||||
Sbjct 361 AGCTCTCAGTTTCATCGCTCATCAGATAGCGATGAGTTAAGTGGAAAACGGCGCAAGGTT 420
Query 627 GTTAATCAGAAGATTGGTTTTCCTAACGTACTCAACTGTACTATTCCCAGGTCTTTGAGC 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 GTTAATCAGAAGATTGGTTTTCCTAACGTACTCAACTGTACTATTCCCAGGTCTTTGAGC 480
Query 687 CACTCATTAGATGAGAAGATGCTTAAGGCATTAAGCTTATTTATGGAGTCCTCAGGTTCA 746
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 CACTCATTAGATGAGAAGATGCTTAAGGCATTAAGCTTATTTATGGAGTCCTCAGGTTCA 540
Query 747 GGTGAGGGCATTTTAGCGCAAGTTTGGACCCCTATCAAGACAGGAGATCAGTACTTGCTC 806
|| |||||||||||||| |||||||||||||| || | |||||||||||||||||||||
Sbjct 541 GGAGAGGGCATTTTAGCTCAAGTTTGGACCCCCATTAGGACAGGAGATCAGTACTTGCTT 600
Query 807 AGTACTTGTGATCAGGCCTATTTGCTTGATCCGAGGTTTTCTCAGTACCGTGAAGTGTCA 866
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 601 AGTACTTGTGATCAGGCCTATTTGCTTGATCCGAGGCTTTCTCAGTACCGTGAAGTGTCA 660
Query 867 AGGAGATTTACGTTTGCTGCTGAAGCAAATCAATGTTCTTTTCCGGGTCTTCCTGGCCGA 926
|||| ||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 661 AGGAAATTTACGTTTGCTTCTGAAGCAAATCAAAGTTCTTTTCCGGGTCTTCCTGGCCGA 720
Query 927 GTCTTTATCTCGGGAGTACCTGAATGGACATCAAACGTTATGTATTACAAGACCGATGAG 986
|||||||||||||||||||||||||||||||||||| |||||||||||||| | ||||||
Sbjct 721 GTCTTTATCTCGGGAGTACCTGAATGGACATCAAACATTATGTATTACAAGGCGGATGAG 780
Query 987 TATTTGCGCATGAAGCATGCAATTGACAATGAAGTCCGTGGTTCCATTGCAATACCTATC 1046
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 781 TATTTGCGCATGAAGCATGCAATTGATAATGAAGTCCGTGGTTCCATTGCAATACCTATC 840
Query 1047 CTTGAAGCTTCTGGGACATCTTGTTGTGCTGTCATGGAACTCGTTACATCCAAGGAAAAA 1106
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 CTTGAAGCCTCCGGGACATCTTGTTGTGCTGTCATGGAACTCGTTACATCCAAGGAAAAA 900
Query 1107 CCTAATTTTGATATGGAGATGGACTCTGTTTGCCGTGCTCTCCAGGCTGTAAACTTACGG 1166
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 CCCAATTTTGATATGGAGATGGACTCTGTTTGCCGTGCTCTCCAGGCTGTAAACTTACGG 960
Query 1167 ACAGCAGCCATTCCTCGTCCTCAGTATCTTTCAAGTAGTCAAAGAGATGCCTTAGCTGAA 1226
||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 961 ACATCAGCCATTCCTCGTCCTCAGTACCTTTCAAGTAGTCAAAGAGATGCCTTAGCTGAA 1020
Query 1227 ATACAAGATGTTCTTCGAACAGTATGTCATGCACACAAGTTGCCCTTAGCTCTTGCCTGG 1286
||||| |||||||| ||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 1021 ATACAGGATGTTCTCCGAGCAGTATGTCATGCACACAAGCTGCCCTTAGCTCTTGCCTGG 1080
Query 1287 ATTCCTTGTAGAAAGGATCAATCTATAAGGGTTTCTGGACAAAAATCTGGTGAAAATTGT 1346
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1081 ATTCCTTGTAGAAAGGATCAATCTATAAGGGTTTCTGGACCAAAATCTGGTGAAAATTAC 1140
Query 1347 ATACTTTGCATAGAGGAGACAGCTTGTTATGTGAACGATATGGAGATGGAAGGCTTTGTG 1406
|| ||||||||||| |||||||||||||||||||| ||||||||||||||||||||| ||
Sbjct 1141 ATTCTTTGCATAGAAGAGACAGCTTGTTATGTGAATGATATGGAGATGGAAGGCTTTCTG 1200
Query 1407 CACGCATGTTTGGAGCATTGTCTAAGAGAAAAAGAAGGAATTGTTGGTAAAGCTTTCATA 1466
||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 1201 CACGCATGTTTGGAGCATTGTCTAAGAGAAAGGGAAGGGATTGTTGGTAAAGCTTTCATA 1260
Query 1467 TCCAACCAGCCGTTCTTTTCTTCTGATGTGAAGGCATATGACATCAGTGAATACCCTATT 1526
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1261 TCCAACCAGCCGTTCTTTTCTTCTGATGTGAAGGCATATGACATCAGTGAGTACCCTATT 1320
Query 1527 GTTCAGCATGCTCGAAAGTACGGTCTGAATGCTGCTGTCGCTATAAAACTGAGGAGCACT 1586
|||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 1321 GTTCAGCATGCTCGAAAGTACGGTCTGAATGCTGCTGTTGCTATAAAACTAAGGAGCACT 1380
Query 1587 TACACTGGTGAAGATGATTACATACTTGAACTGTTCTTGCCTGTAAGTATGAAAGGAAGC 1646
|||||||| |||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 1381 TACACTGGCGAAGATGATTACATTCTTGAACTATTCTTGCCTGTAAGTATGAAAGGAAGC 1440
Query 1647 TTGGAACAACAACTTCTATTAGACAGCCTTTCGGGTACAATGCAGAGAATTTGTCGAACT 1706
||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |||
Sbjct 1441 TTGGAACAACAACTTCTTTTAGACAGCCTTTCGGGTACAATGCAGAGGATTTGTCGGACT 1500
Query 1707 TTGAGAACTGTTTCAGAAGTGGGGTCAACTAAAAAAG-AAGGGACTAAACCTGGATTTCG 1765
||||||||||||||||||||||||||||| ||||||| ||| | |||| | || |
Sbjct 1501 TTGAGAACTGTTTCAGAAGTGGGGTCAAC-AAAAAAGGAAGTGTCTAA---T---TTCCC 1553
Query 1766 G-AGTAGTGATATGTCTAATTTCCCGCAGACAACGTCTTCAGAAAATTTTCAGACAATAT 1824
| || | | | |||| || | || ||| | | |||| ||| |||||| ||
Sbjct 1554 GCAG-A-TCAC--GTCT--TTG---G--GA-AAC-T-TGG-GAAACTTT-CAGACACGAT 1597
Query 1825 CATTGGATTCCGAGTTTAACTCTACTAGAAGCATGTTTTCGGGTATGTCCTCTGATAAAG 1884
|||||||||| ||| || |||||||||||||||| |||||||||||||||||||| ||||
Sbjct 1598 CATTGGATTCTGAGGTTGACTCTACTAGAAGCATATTTTCGGGTATGTCCTCTGAAAAAG 1657
Query 1885 AAAACAGTATCACAGTATCTCAAGGCACTTTGGAGCAGGATGTGAGCAAAGCAAGAACAC 1944
|||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||||
Sbjct 1658 AAAACAGTATCACAGTATCTCAAGGCGCTTTGGAGCAGGATATGAGCAAAGCAGGAACAC 1717
Query 1945 CAGAGAAGAAGAAAAGCACTACAGAGAAAAATGTGAGCTTAAGCGCTCTCCAACAACACT 2004
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1718 CAGAGAAGAAGAAAAGCACTACAGAGAAAAATGTGAGCTTAAGCGCTCTCCAACAACACT 1777
Query 2005 TCTCTGGGAGTCTAAAGGATGCTGCAAAAAGCCTTGGTGGTGAGACTTCCGCATATTT-C 2063
| ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| |
Sbjct 1778 TTTCTGGGAGTCTAAAGGATGCTGCAAAAAGCCTTGGTGGTGAGACTTCTACATTTTTTC 1837
Query 2064 CAAGCATGGGTTTAttttttttGTCCAACTACATTGAAACGGATATGCAGGCAACATGGG 2123
|| |||||| |||| |||||| ||||||||||||| ||||||||||| ||||||||||||
Sbjct 1838 CAGGCATGGATTTAATTTTTT-GTCCAACTACATTAAAACGGATATGTAGGCAACATGGG 1896
Query 2124 ATCATGAGGTGGCCATCTCGTAAGATTAACAAAGTGAACAGGTCACTAAGGAAAATACAG 2183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1897 ATCATGAGGTGGCCATCTCGTAAGATTAACAAAGTGAACAGGTCACTAAGGAAAATACAG 1956
Query 2184 ACGGTACTGGACTCGGTCCAAGGTGTAGAAGGAGGACTAAAGTTCGACTCAGCAACTGGC 2243
|||||||| ||||||||||||||||||||||||||||||||||| |||||| |||| |||
Sbjct 1957 ACGGTACTTGACTCGGTCCAAGGTGTAGAAGGAGGACTAAAGTTTGACTCAACAACAGGC 2016
Query 2244 GAATTCATTGCAGTTAGACCTTTTATTCAAGAAATTGATACCCAAAAGGGTCTGTCGTCT 2303
||||||||||||||| ||||||| || |||||| ||||||||||||||||||| ||||||
Sbjct 2017 GAATTCATTGCAGTTGGACCTTTGATCCAAGAATTTGATACCCAAAAGGGTCTATCGTCT 2076
Query 2304 CTTGATAATGATGCACATGCAAGAAGAAGTCAGGAGGATATGCCTGACGATACTTCATTC 2363
| || ||||||||||||||||||||||||||| ||||||||| ||||||||||||| |||
Sbjct 2077 CATGGTAATGATGCACATGCAAGAAGAAGTCAAGAGGATATGGCTGACGATACTTCGTTC 2136
Query 2364 AAGCTCCAGGAAGCTAAATCTGTCGACAATGCCATTAAGTTAGAGGAGGATACAACCATG 2423
||||||| |||||||||| |||||||||||||||||||||||||||||||| | ||||
Sbjct 2137 GAGCTCCATGAAGCTAAATTTGTCGACAATGCCATTAAGTTAGAGGAGGATATTATCATG 2196
Query 2424 AATCAAGCAAGA-CCAGGATCATTCATGGAGGTTAATGCTAGTGGTCAGCCATGGGCTTG 2482
|| ||||||||| || ||||||||||||||| ||||||||||||||||||| |||| |||
Sbjct 2197 AACCAAGCAAGAACC-GGATCATTCATGGAGATTAATGCTAGTGGTCAGCCGTGGGGTTG 2255
Query 2483 GATGGCCAAAGAGTCTGGCTTGAATGGCAGTGAAGGAATAAAGAGCGTTTGCAACTTAAG 2542
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2256 GATGGCCGAACAGTCTGGCTTGAATGGCAGTGAAGGAATAAAGAGCGTTTGCAACTTAAG 2315
Query 2543 CTCTGTGGAAATTTCAGATGGAATGGATCCAACAATCCGATGCAGTGGCAGTATTGTTGA 2602
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2316 CTCTCTGGAAATTTCAGATGGAATGGATCCAACAATCCGATGCAGTGGCAGTATTGTTGA 2375
Query 2603 ACCTAACCAATCCATGTCATGCAGCATATCAGATTCATCAAATGGCTCAGGCGCAGTTCT 2662
||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2376 ACCTAACAAATCCATGTCATGCAGCATATCAGATTCATCAAATGGCTCAGGTGCAGTTCT 2435
Query 2663 GCGTGGAAGCTCATCTACTTCCATGGAAGATTGGAACCAAATGAGAACCCACAACAGTAA 2722
||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| |||
Sbjct 2436 GCGCGGAAGCTCATCTACTTCCTTGGAAGATTGGAACCAAATGAGAACCCACAACAATAA 2495
Query 2723 TAGCAGCGAGAGTGGATCAACAACGCTGATCGTAAAGGCCAGTTATAGAGAAGACACTGT 2782
|||| |||||||| ||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 2496 TAGCGGCGAGAGTAGATCAACAACGCTGATCGTAAAGGCCACTTATAAAGAAGACACTGT 2555
Query 2783 ACGTTTCAAGTTCGAGCCATCAGTTGGGTGTCCTCAGCTCTACAAAGAAGTTGGAAAACG 2842
||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 2556 ACGTTTCAAGTTCGAGCCATCGGTTGGGTGTCCTCAGCTCTACAAAGAAGTTGGGAAACG 2615
Query 2843 TTTTAAACTGCAGGACGGGTCGTTTCAGCTGAAGTACTTGGATGATGAAGAAGAATGGGT 2902
||||||||| || |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 2616 TTTTAAACTACAAGACGGGTCGTTTCAACTGAAGTACTTGGATGATGAAGAAGAATGGGT 2675
Query 2903 GATGCTGGTTACAGATTCTGATCTCCAAGAATGTTTGGAGATATTACATGGTATGGGAAA 2962
||||||||||||||||||||||||||||||||| ||||||||| || |||||||||||||
Sbjct 2676 GATGCTGGTTACAGATTCTGATCTCCAAGAATGCTTGGAGATACTATATGGTATGGGAAA 2735
Query 2963 ACACTCGGTGAAGTTTCTCGTTCGTGATTTGTCTGCCCCTCTAGGTAGTTCTGGTGGCAG 3022
|||||| ||||||||||| ||||| |||||| ||| || | | |||||||||||||||||
Sbjct 2736 ACACTCAGTGAAGTTTCTGGTTCGGGATTTGCCTGTCCTTATTGGTAGTTCTGGTGGCAG 2795
Query 3023 TAATGGTTATCTTGGAACAGGCTTATGACGTCGTAAGACATAGACACACACAGTTATGTA 3082
|||||||| || |||||||| || | | | | | || ||||||||||||||||
Sbjct 2796 CAATGGTTACCTAGGAACAGG-TT-T-A--T-G-A---CA----CACACACAGTTATGTA 2841
Query 3083 TTCCCA-GTGAAAGAATGTTGTTTATTTCTCTAGATATTAGTATGCTTATAAATAGGCAT 3141
||||| ||||||| | | ||||||||||| |||||||||| ||||||| || |
Sbjct 2842 TTCCCCTGTGAAAG--T-T-GTTTATTTCTCCAGATATTAGTTTGCTTAT-----GG-A- 2890
Query 3142 GAAGGAGAAAGACAATTTTGGTATAGTGGAGTTCAGCAGAAAATGTATATGTTTTTTCGT 3201
| | | ||| || ||||||||||||||||| | | |||| |||||||| |||| |||
Sbjct 2891 G--G-A-AAA--CAGTTTTGGTATAGTGGAGTCCGG-AGAA--TGTATATGCTTTT-CGT 2940
Query 3202 TTTATATGAATCAGAGAATAAAA 3224
|||||||||||||||||||||||
Sbjct 2941 TTTATATGAATCAGAGAATAAAA 2963
> Ahg898914 jgi|Araly1|898914|Al_scaffold_0005_2880
Length=2646
Score = 702 bits (380), Expect = 0.0
Identities = 856/1080 (79%), Gaps = 55/1080 (5%)
Strand=Plus/Plus
Query 996 ATGAAGCATGCAATT-GACAATGAAGTCCGTGGTTCCATTGCAATACCTATCCTTGAAGC 1054
||||||||||| ||| || || |||||||||||||| |||||||| ||| ||||||||||
Sbjct 583 ATGAAGCATGC-ATTAGATAACGAAGTCCGTGGTTCGATTGCAATTCCTGTCCTTGAAGC 641
Query 1055 TTCTGGGACATCTTGTTGTGCTGTCATGGAACTCGTTACATCCAAGGAAAAACCTAATTT 1114
||| || ||||||||| | ||| ||||||| || |||| | ||||||||| || ||
Sbjct 642 ATCT-GG--TTCTTGTTGTACAGTCCTGGAACTTGTAACATGTAGGGAAAAACCAAACTT 698
Query 1115 TGATATGGAGATGGACTCTGTTTGCCGTGCTCTCCAGGCTGTAAACTTACGGACAGCAGC 1174
|||| |||||||||||||||||||||||||||| |||||||| ||||||| ||| || |
Sbjct 699 TGATGTGGAGATGGACTCTGTTTGCCGTGCTCTGCAGGCTGTGAACTTACAAACATCAAC 758
Query 1175 CATTCCTCGTCCTCAGTATCTTTCAAGTAGTCAAAGAGATGCCTTAGCTGAAATACA-AG 1233
||||||||| |||||| |||||||||| ||||| ||| || || ||||||||| | ||
Sbjct 759 TATTCCTCGTTGTCAGTACCTTTCAAGTAATCAAAAAGAAGCTTTGGCTGAAATA-AGAG 817
Query 1234 ATGTTCTTC-GAACAGTATGTCATGCACACAAGTTGCCCTTAGCTCTTGCCTGGATTCCT 1292
||||||| | || |||| ||||||||||| | |||||| |||||||| || ||||||||
Sbjct 818 ATGTTCT-CAGAGCAGTGTGTCATGCACATAGGTTGCCTTTAGCTCTAGCTTGGATTCCC 876
Query 1293 TGTAG--A----AAGG-ATCAATCTAT-AA--GG----G-TTTCTGGACAAAAAT-CTG- 1335
||||| | |||| | ||| | | || || | ||| ||| ||||||| |
Sbjct 877 TGTAGTTACTCCAAGGGAGCAAACGGTGAATTGGTAAAGATTTATGG-CAAAAATTCAAA 935
Query 1336 GTGAAAATTGTATACTTTGCATAGAGGAGACAGCTTGTTATGTGAACGATATGGAGATGG 1395
| ||| || | | ||||||||||| |||||||| ||||||||||| |||||||| ||||
Sbjct 936 G-GAATGTTCTCTTCTTTGCATAGAAGAGACAGCATGTTATGTGAATGATATGGAAATGG 994
Query 1396 AAGGCTTTGTGCACGCATGTTTGGAGCATTGTCTAAGAGAAAAAG-AAGGAATTGTTGGT 1454
||||||||||| | ||||| || |||| || |||||||||| | |||||||||||||
Sbjct 995 AAGGCTTTGTGAATGCATGCTTAGAGCTTTATCTAAGAGAAGG-GCAAGGAATTGTTGGC 1053
Query 1455 AAAGCTTTCATATCCAACCAGCCGTTCTTT-TCTTCTGATGTGAAGGCATATGACATCAG 1513
||||| ||||||| ||| | |||| |||| || |||||||| ||| ||| ||| ||| |
Sbjct 1054 AAAGCACTCATATCAAACAAACCGT-CTTTCTCATCTGATGTAAAGACATTTGATATCTG 1112
Query 1514 TGAATACCCTATTGTTCAGCATGCTCGAAAGTACGGTCTGAATGCTGCTGTCGCTATAAA 1573
|| |||||| ||||||| ||||||||||||| ||||| |||||||| || |||| ||
Sbjct 1113 CGAGTACCCTCTTGTTCAACATGCTCGAAAGTTTGGTCTTAATGCTGCAGTTGCTACCAA 1172
Query 1574 ACTGAGGAGCAC-TTACACTGGTGA-AGATGATTACATACTTGAACTGTTCTTGCCTGTA 1631
|||||||||||| || ||||||||| || ||| || |||||||| | ||||| ||||||
Sbjct 1173 ACTGAGGAGCACATT-CACTGGTGACAG-TGACTATATACTTGAGTTTTTCTTACCTGTA 1230
Query 1632 AGTATGAAAGGAAGCTTGGAACAACAACTTCTATTAGACAGCCTTTCGGGTACAATGCAG 1691
|||||||| ||||||| |||||||||||| | | ||||| || ||||| || ||||||
Sbjct 1231 AGTATGAAGGGAAGCTCAGAACAACAACTTTTGCTGGACAGTCTCTCGGGCACGATGCAG 1290
Query 1692 AGAATTTGTCGAACTTTGAGAACTGTTTCAGAAGTGGGGTCAACTAAAAAAGAAGGGACT 1751
||||| ||||||||| | |||||||||||||| | | ||| || ||||| |||
Sbjct 1291 AGAATATGTCGAACTCTAAGAACTGTTTCAGATGCCGAATCAGCT------GAAGGTACT 1344
Query 1752 AAACCTGGATTTCGGAGTAGTGATATGTCTAATTTCCCGCAGACAAC-GTCTTC-A-GAA 1808
|| |||||||| ||| | || ||| | ||| |||| ||| | || || | | | | |
Sbjct 1345 GAATTTGGATTTCTTAGTGGAGAAATGACAAATCTCCCACAGGCTACTGTATCCGATGGA 1404
Query 1809 AATTTTCAGACAATAT-CATTGGATTCCGA-GTTTAACTCTACTAGAAGCATGTTTTCGG 1866
| |||||||||| || | |||| | | || ||||||||| |||| | ||||||
Sbjct 1405 AGCTTTCAGACAACATTCCC-GGATACTAACGTC-AACTCTACTCGAAGTAACTTTTCGA 1462
Query 1867 GTATGTCCTCTGATAAA-GAAAACAGTATCACAG-TATCTCAAGGCACT-TTGGAGCAGG 1923
|||||||||||||| |||| | || ||| | |||||||||||| || ||||||
Sbjct 1463 ACGTGTCCTCTGATAAAAGAAATGAA-ATGGCAGGT-TCTCAAGGCACTCTTC-AGCAGG 1519
Query 1924 ATGTGAGCAAAGCAAGAACACCAGAGAAGAAGAAAAGCACTACAGAGAAAAATGTGAGCT 1983
| | ||| |||||||| | |||||||||||||||||| ||||||||| ||||||||||
Sbjct 1520 AAATTAGCGGAGCAAGAAGATCAGAGAAGAAGAAAAGCAGTACAGAGAAGAATGTGAGCT 1579
Query 1984 TAAGCGCTCTCCAACAACACTTCTCTGGGAGTCTAAAGGATGCTGCAAAAAGCCTTGGTG 2043
||| | |||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 1580 TAAATGTTCTCCAACAATACTTCTCTGGGAGTTTAAAGGATGCTGCAAAAAGCCTTGGTG 1639
Score = 315 bits (170), Expect = 2e-84
Identities = 330/404 (82%), Gaps = 24/404 (6%)
Strand=Plus/Plus
Query 2601 GAACCTAACCAATCCATGTCATGCAGCATATCAGATTCATCAAATGGCTCAGGCGCAGTT 2660
||||| ||||||||||| ||| ||||||| || |||||||||||| ||||||| ||||||
Sbjct 2188 GAACCAAACCAATCCATATCAAGCAGCATGTCGGATTCATCAAATAGCTCAGGAGCAGTT 2247
Query 2661 CTGCGT-GGAAGCTCATCTACTTCCATGG---AAGATTGGAACCAAATGAGAACCCACAA 2716
|| | ||||| |||||||||||||||| || | ||||||||||| ||||| || ||
Sbjct 2248 TTG-TTGGGAAGTTCATCTACTTCCATGGAACAAAACTGGAACCAAATAAGAACTCATAA 2306
Query 2717 CAGTAATAGCAGCGAGAGTGGATCAA---CAACGCTGATC-GTAAAGGCCAGTTATAGAG 2772
| |||||| | ||||| ||||||| |||| |||| | ||||| |||| ||||||||
Sbjct 2307 C---AATAGCGGTGAGAGCGGATCAAGTTCAACACTGA-CAGTAAAAGCCACTTATAGAG 2362
Query 2773 AAGACACTGTACGTTTCAAG-TTCGAGCC--ATC-AGTTGGGTGTCCTCAGCTCTACAAA 2828
| |||||||||||||||||| || || || ||| ||||||||| ||||||| |||| |
Sbjct 2363 AGGACACTGTACGTTTCAAGCTT-GATCCATATCTTGTTGGGTGTTCTCAGCTGTACAGA 2421
Query 2829 GAAGTTGG-AAAACGTTTTAAACTGC-AGGACGGGTCGTTTCAGCTGAAGTACTTGGATG 2886
|||| ||| || ||||| || |||| || | | | | |||||| |||| ||||||||||
Sbjct 2422 GAAG-TGGCTAAGCGTTTCAAGCTGCAAGAAAGTG-CCTTTCAGTTGAAATACTTGGATG 2479
Query 2887 ATGAAGAAGAATGGGTGATGCTGGTTACAGATTCTGATCTCCAAGAATGTTTGGAGATAT 2946
|||||||||||||||||||| |||| ||||||||||||||||| ||||| || |||||||
Sbjct 2480 ATGAAGAAGAATGGGTGATGTTGGTCACAGATTCTGATCTCCATGAATGCTTCGAGATAT 2539
Query 2947 TACATGGTATGGGAAAACACT-CGGTGAAGTTTCTCGTTCGTGA 2989
|| | ||||| ||||||| | | || |||||||| || |||||
Sbjct 2540 TAAACAGTATGAGAAAACA-TACAGTAAAGTTTCTGGTCCGTGA 2582
> Ahg908209 jgi|Araly1|908209|Al_scaffold_0002_1290
Length=513
Score = 508 bits (275), Expect = 8e-143
Identities = 332/359 (92%), Gaps = 5/359 (1%)
Strand=Plus/Plus
Query 2367 CTCCAGGAAGCTAAATCTGTCGACAATGCCATTAAGTTAGAGGAGGATACAACCATGAAT 2426
|||||||||||||||| |||||||||||||||||||||||| ||| ||| ||||||||
Sbjct 157 CTCCAGGAAGCTAAATTTGTCGACAATGCCATTAAGTTAGAAGAGCATATTACCATGAAC 216
Query 2427 CAAGCAAGACCAGGATCATTCATGGAGGTTAATGCTAGTGGTCAGCCATGGGCTTGGATG 2486
||||||||| ||||||| |||||||||||||||| ||||||||| ||||||| |||||||
Sbjct 217 CAAGCAAGATCAGGATCTTTCATGGAGGTTAATGTTAGTGGTCAACCATGGGGTTGGATG 276
Query 2487 GCCA-AAGAGTCTGGCTTGAATGGCAGTGAAGGAAT-AAAGAGCGTTTGCAACTTAAGCT 2544
| || || ||||| |||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct 277 G-CAGAACAGTCTAGCTTGAATGGCAGTGAAGGAATAAAAG-GCGTTTGCAACTTAAGCT 334
Query 2545 CTGTGGAAATTTCAGATGGAATGGATCCAACAATCCGATGCAGTGGCAGTATTGTTGAAC 2604
|| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 335 CTCTCAAAATTTCAGATGGAATGGATCCAACAATCCGATGCAGTGGCAGTATTGTTGAAC 394
Query 2605 CTAACCAATCCATGTCATGCAGCATATCAGATTCATCAAATGGCTCAGGCGCAGT-TCTG 2663
||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| ||||
Sbjct 395 CTAACCAATCCATGTCATGCAGCATATCAGATTCATCAAATTGCTCAGGTGCAGTATCTG 454
Query 2664 CGTGGAAGCTCATCTACTTCCATGGAAGATTGGAACCAAATGAGAACCCACAACAGTAA 2722
| ||| |||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 455 GGCGGAGGCTCATCTACTTCCATGGAAGATTGGAACCAAATGAGAACCCACAACAATAA 513
Score = 161 bits (87), Expect = 2e-38
Identities = 133/152 (88%), Gaps = 15/152 (10%)
Strand=Plus/Plus
Query 1869 ATGTCCTCTGATAAAGAAAACAGTATCACAGTATCTCAAGGCACTTTGGAGCAGGATGTG 1928
||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | |
Sbjct 1 ATGTCCTCTGATAAAGAAAACAGTATCACAGTATCTCAAGGCACTTTGGAGAAGG-T-T- 57
Query 1929 AGCAAAGCAAGAACACCAGAGAAGAAGAAAAGCACTACAGAGAAAAATGTGAGCTTAAGC 1988
| | || || |||||||||||||||||||||||||||||||||||||||||
Sbjct 58 ----ATG--AG-----CA-AGAAGAAGAAAAGCACTACAGAGAAAAATGTGAGCTTAAGC 105
Query 1989 GCTCTCCAACAACACTTCTCTGGGAGTCTAAA 2020
||||||||||||||||| | ||||||||||||
Sbjct 106 GCTCTCCAACAACACTTTTTTGGGAGTCTAAA 137
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 122240924476
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5