BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G43510.1

Length=491
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg483463 jgi|Araly1|483463|fgenesh2_kg.4__2523__AT2G43510.1         649    0.0  


> Ahg483463 jgi|Araly1|483463|fgenesh2_kg.4__2523__AT2G43510.1
Length=502

 Score =  649 bits (351),  Expect = 0.0
 Identities = 457/504 (91%), Gaps = 24/504 (5%)
 Strand=Plus/Plus

Query  1    ACATATCAACAAACCTAAAGTTAGATAAACAAAGAGAAAATGGCAAAGGCTATCGTTTCC  60
            |||||||| |||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct  1    ACATATCACCAAACCTAAAGTTAGATAAACAGAGAGAAAATGGTAAAGGCTATCGTTTCC  60

Query  61   ATCTTCGTTGTCTTTTTCATCTTCTTCTTAGTCATTTCCGATGTGCCGGAGATAGAAGCG  120
            |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct  61   ATCTTCGTTGTCTTTTTCATCTTCTTCTTAGTCATTTCCGATGTACCGGAGATAGAAGCG  120

Query  121  CAAGGTAACGAGTGCTTGAAAGAATACGGAGGTGATGTTGGTTTCGGCTTTTGTGCGCCT  180
            ||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||
Sbjct  121  CAAGGTAACGAGTGCTTGAAAGAATACGGCGGTGATGTTGGTTTCAGCTTTTGTGCGCCT  180

Query  181  CGGATATTTCCGACGATTTGTTACACAAGATGCCGTGAGAACAAGGGAGCTAAAGGTGGA  240
             |||| ||||||||| ||||||| ||||||||||||||| ||||||||||||||||||||
Sbjct  181  AGGATTTTTCCGACGTTTTGTTATACAAGATGCCGTGAGGACAAGGGAGCTAAAGGTGGA  240

Query  241  AGATGCCGTTGGGGACAGGGCAGTAACGTCAAATGCTTATGCGACTTCTGCGACGATACT  300
            |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct  241  AGATGCCGTTGGGGACAGGGCAGTAACGTCAAATGCTTATGCGACTCCTGCGACGATACT  300

Query  301  CCAC-AGTAAAATCTAAA----GCAATCGCTAATCAATGCACTAAGGCTGCCATAGACGC  355
            |||| | |||||||||||    | |||||||||| ||||||||| |||||| ||||||||
Sbjct  301  CCACGA-TAAAATCTAAATAAAGAAATCGCTAATAAATGCACTATGGCTGCAATAGACGC  359

Query  356  AAT---TATTA---TACACGTTGTCTTTACGTACATT-CACAAGTTTTAGTCATGGTTTG  408
            |||   || ||   |||||||||| ||||||||| || ||||||||||||||||||||||
Sbjct  360  AATCGCTAATAAAATACACGTTGTGTTTACGTAC-TTGCACAAGTTTTAGTCATGGTTTG  418

Query  409  TGTAATAAATGAATGTGAATGGTCTATCCAAGTGATG-TA-A-T---G--TG--AAATCA  458
            ||||||||||| |||| ||||||| |||||||||||  || | |   |  ||  |||| |
Sbjct  419  TGTAATAAATGGATGTAAATGGTCCATCCAAGTGATAATACAATAATGAATGTGAAATAA  478

Query  459  GAAATAATGAAAGTGTGACTTTTG  482
            ||||||||||||||||||||||||
Sbjct  479  GAAATAATGAAAGTGTGACTTTTG  502



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17818660063


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5