BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G43520.1
Length=590
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483464 jgi|Araly1|483464|fgenesh2_kg.4__2524__AT2G43520.1 730 0.0
> Ahg483464 jgi|Araly1|483464|fgenesh2_kg.4__2524__AT2G43520.1
Length=483
Score = 730 bits (395), Expect = 0.0
Identities = 454/483 (94%), Gaps = 2/483 (0%)
Strand=Plus/Plus
Query 11 TCAACTCGTGACCCGTGGTTGTCATGATAATTTCTAGACCCAACGATAAAGATAAAATAG 70
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TCAAGTCGTGACCCGTGGTTGTCATGATAATTTCTAGACCCAACGATAAAGATAAAATAG 60
Query 71 TAGCATCGCACCACAACAAGTGTTGAGCATGAGTCTATATATATACACATACGTTAACTC 130
|| || ||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 61 TACCACCGCACCATAACAAGTGTTGAGCATGAGTCTATATATAAACACATACGTTAACTC 120
Query 131 CAAAGTGAAACAAAGAGATTAGAAACTACGGAGAGAAAGAGAGA-AGATATATAGCCATG 189
||||||||||||| |||||||| ||||| |||||| ||| ||| ||| | |||||||||
Sbjct 121 CAAAGTGAAACAATTAGATTAGAGACTACAGAGAGAGAGAAAGAGAGA-AGATAGCCATG 179
Query 190 GCAATGAAGTCAGTTTCTACCTTGGCCGTTTTTGCCATCCTCTTTTTGGTTATCGTTGAA 249
|||| |||||||||||||||||||||||||| || ||||||||||||||||||| |||||
Sbjct 180 GCAACGAAGTCAGTTTCTACCTTGGCCGTTTCTGTCATCCTCTTTTTGGTTATCTTTGAA 239
Query 250 ATGCCAGAGATAAAAGCGCAAGGTAGCAAGTGTCTGAAAGAATATGGCGGTAATGTGGGT 309
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||
Sbjct 240 ATGCCAGAGATAAAAGCGCAAGATAGCAAGTGTCTGAAAGAATATGGCGGTAATGTCGGT 299
Query 310 TTCAGCTATTGTGCGCCTAGGATATTTCCGTCATTCTGTTATCGGAACTGCCGTAAGAAT 369
||||| |||||||||||| ||||||||||||| ||||||||||| |||||||||||||||
Sbjct 300 TTCAGTTATTGTGCGCCTCGGATATTTCCGTCGTTCTGTTATCGAAACTGCCGTAAGAAT 359
Query 370 AAGGGCGCGAAGGGAGGTAGATGCCGTTCGGGAGGGGCAGGAGCTGGTAGTATGATATGT 429
||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 360 AAGGGTGCGAAGGGAGGTAGATGCCGTTCGGGAGGGGCAGGAGCTGGTGGTATGATATGT 419
Query 430 TTATGCGACTACTGCAGCGACAAACCTTAAATCAGATCGTTAAACGTTTTAACCTCAAAC 489
|||||||||||||||||||||||||||||||||||||||||||||| ||| || ||||||
Sbjct 420 TTATGCGACTACTGCAGCGACAAACCTTAAATCAGATCGTTAAACGCTTTGACGTCAAAC 479
Query 490 GCA 492
|||
Sbjct 480 GCA 482
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 21596063374
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5