BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G43535.1

Length=567
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg935257 jgi|Araly1|935257|scaffold_403245.1                        326    1e-88


> Ahg935257 jgi|Araly1|935257|scaffold_403245.1
Length=353

 Score =  326 bits (176),  Expect = 1e-88
 Identities = 299/354 (84%), Gaps = 26/354 (7%)
 Strand=Plus/Plus

Query  141  AGAGATAGAGAATCGCCATGGCAAAGATGTCAGCACTTTCTATCTTCGCCATCTTTATCA  200
            ||||| |||||| || |||||||| || |||||   |||| | |||||||||||||||||
Sbjct  4    AGAGAGAGAGAAACGTCATGGCAACGAAGTCAG---TTTCCACCTTCGCCATCTTTATCA  60

Query  201  TCCTCGTTCTGGTTATCTTTGAAATACCTGAGATAGAAGCACATGATAGCGAGTGTCTGA  260
            ||||||||||||||||||||| |||| || | ||||||||||| ||||||||||| ||||
Sbjct  61   TCCTCGTTCTGGTTATCTTTGGAATATCTAAAATAGAAGCACAGGATAGCGAGTGCCTGA  120

Query  261  AAGAATATGG-G--G--G-TGA---TG-T--TG--GG-TTTGGCTTCTGTGCGCCTAAGA  305
            |||||||||| |  |  | |||   || |  ||  || ||| ||||||||||||||| ||
Sbjct  121  AAGAATATGGTGTTGATGATGATGGTGATGATGTTGGTTTTCGCTTCTGTGCGCCTAGGA  180

Query  306  TATTTCCGACGATTTGTTATAGAA-ATTGCCAAAAGGACAAGGGGGCTAATGGTGGAAAA  364
            ||  ||||||| |||||||||||| | ||| || |||||||||||||||| |||||||||
Sbjct  181  TACATCCGACGCTTTGTTATAGAAGA-TGCGAAGAGGACAAGGGGGCTAAGGGTGGAAAA  239

Query  365  TGCCTCTGGG--G-AGA-GG--GCGGTAAAGTGAAATGCTTATGCGACTTCTGCAGCAAT  418
            ||||| ||||  | ||| ||  ||||||| ||||||||||||||||||||||||||| | 
Sbjct  240  TGCCTTTGGGACGAAGAGGGCAGCGGTAATGTGAAATGCTTATGCGACTTCTGCAGCGAG  299

Query  419  GAATCTTTTAATCAGTTTATAAGTCTTACTTGAAACTTGCATGTGTCGTCGTTT  472
            ||  |||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct  300  GAGCCTTTTAATCAGTTTATAAGTCTTACTTGAATCTTGCATGTGTCGTGGTTT  353



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20718484827


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5