BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G43540.1
Length=593
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483465 jgi|Araly1|483465|fgenesh2_kg.4__2525__AT2G43540.1 773 0.0
> Ahg483465 jgi|Araly1|483465|fgenesh2_kg.4__2525__AT2G43540.1
Length=544
Score = 773 bits (418), Expect = 0.0
Identities = 497/536 (93%), Gaps = 2/536 (0%)
Strand=Plus/Plus
Query 9 AGAAAAATGGGGATATCGGGTTCAAAGCGAGTTACGACGATTCTATCTAACTCGCCCGAG 68
|||||||||||||||||||||||||||||||| ||| |||||||||| ||||||||||||
Sbjct 2 AGAAAAATGGGGATATCGGGTTCAAAGCGAGTCACGGCGATTCTATCCAACTCGCCCGAG 61
Query 69 TTTGACTCGGCTTGTGACTCAGCATACGACGAATCTCTCTCTCTTGCACAGCATGCTTTC 128
||| ||||||||||||||||||| ||||| || ||||| ||||||||||||||| |||||
Sbjct 62 TTTAACTCGGCTTGTGACTCAGCGTACGAGGAGTCTCTTTCTCTTGCACAGCATACTTTC 121
Query 129 GCCGGAGTTCGTCCTTACCAGCTCGTCTCCGCCGCCGCCCACATCCACCGGAATCTTTCC 188
|||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 122 GCCGGAGTTCGTCCCTACCAGCTCGTCTCCGCCGCCGCTCACATCCACCGGAATCTTTCC 181
Query 189 GCTCTTCGTTTCCCTCTAATCACCAGATGGCTCTCTTCTCCTCCGAGTCAATCCCAAGTC 248
|||| || ||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 182 TCTCTCCGGTTCCCTCTAATCACCAGATGGGTCCCTTCTCCTCCGAGTCAATCCCAAGTC 241
Query 249 GACTCAGCTCTCCGAGTCACCGTCTCTCGAGTCACGGCGGCGGATGAGGAGGAGATCCTC 308
||||||||||||||||||||||||||||||||| | || ||||| ||||||||||||||
Sbjct 242 GACTCAGCTCTCCGAGTCACCGTCTCTCGAGTCGCAGCAGCGGAGGAGGAGGAGATCCTT 301
Query 309 GGGCAAGAGGAGTTCAA-GAAATGGGCCGTCGAGGTTTTCGCGGAAGCCGTTGTGGGAAA 367
|| | ||||||||||| ||| ||||||||||||||||||| |||| || | ||||||||
Sbjct 302 GGACCGGAGGAGTTCAAAGAA-TGGGCCGTCGAGGTTTTCGTGGAATCCATAGTGGGAAA 360
Query 368 CGCGAGGAAGACAATAGCGAGTCGGATTCCGTTAGGAATCGTCGGAATCGGTGGGATCGG 427
|||||||||||| ||||||||||||||||| ||||||||||| ||||||| |||||||||
Sbjct 361 CGCGAGGAAGACGATAGCGAGTCGGATTCCATTAGGAATCGTTGGAATCGCTGGGATCGG 420
Query 428 CGCCGTGACTCGGTCGGGTCAAAACTTGATCGGAGCTGCGATTGGTGTGTACGCGATAGG 487
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 421 CGCGGTGACTCGGTCGGGTCAAAACTTGATCGGAGCTGCGATTGGTGTGTACGCGATTGG 480
Query 488 AGTTGCTACTTCCGTTTTTCTAAGCCTCACTGATTAGAAGAAAAGATTACGTTGTT 543
|||||||||||| ||||||||||||||| |||||||||| ||||||||||||||||
Sbjct 481 AGTTGCTACTTCGGTTTTTCTAAGCCTCTCTGATTAGAATAAAAGATTACGTTGTT 536
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 21710530141
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5