BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G43550.1
Length=595
Score E
Sequences producing significant alignments: (Bits) Value
Ahg935260 jgi|Araly1|935260|scaffold_403248.1 449 8e-126
> Ahg935260 jgi|Araly1|935260|scaffold_403248.1
Length=361
Score = 449 bits (243), Expect = 8e-126
Identities = 293/317 (92%), Gaps = 4/317 (1%)
Strand=Plus/Plus
Query 28 CAATGTCCGAATACATCTCCAAAGTAAGCAATAAGCAAAGGAAAATGAAGTTTGTTTCCG 87
||||||||| ||||||||||||||| |||||||||||||||||||||||| | |||||
Sbjct 32 CAATGTCCG-ATACATCTCCAAAGTGGGCAATAAGCAAAGGAAAATGAAGTCTATTTCCA 90
Query 88 TCTTCCTCGTTCTGTTTATCTTCTTCCTCGTCGTTCTTGAGGCCCCGGAGAAGATAGAAG 147
||||||| || |||||| ||||||||||||||||||||||||| ||||||||||||||||
Sbjct 91 TCTTCCTTGTGCTGTTTCTCTTCTTCCTCGTCGTTCTTGAGGCGCCGGAGAAGATAGAAG 150
Query 148 CCAAAGACGACAAGTTCATATGTGTGGTTGAGTATGGAGGAGACGTGGGTCCAACGTTCT 207
|||| | |||||||||||||||||||||||||| || |||||||||||||| |||||||
Sbjct 151 -CAAA-A-GACAAGTTCATATGTGTGGTTGAGTACGGCGGAGACGTGGGTCCCACGTTCT 207
Query 208 GTAACCCTAAATTCTTCCCCACGTTGTGCCGTCAAAACTGCCGGAGCTTCAAAGGTGCCA 267
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 208 GTAACCCTAAGTTCTTCCCCACGTTGTGCCGTCAAAACTGCCGGAGCTTCAAAGGTGCAA 267
Query 268 AAGGCGGTAAATGCGTGAAGCAACCCAAACACAAACATATCAAGTGCTTCTGCGACTACT 327
||||||||| ||||||||||||||| |||||||||| |||||| ||||||||||||||||
Sbjct 268 AAGGCGGTATATGCGTGAAGCAACCGAAACACAAACCTATCAAATGCTTCTGCGACTACT 327
Query 328 GTAAAGACGACTAGACT 344
| ||||| |||||||||
Sbjct 328 GCAAAGATGACTAGACT 344
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 21786841319
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5