BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G43560.1
Length=921
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483467 jgi|Araly1|483467|fgenesh2_kg.4__2527__AT2G43560.1 1393 0.0
> Ahg483467 jgi|Araly1|483467|fgenesh2_kg.4__2527__AT2G43560.1
Length=915
Score = 1393 bits (754), Expect = 0.0
Identities = 868/922 (94%), Gaps = 12/922 (1%)
Strand=Plus/Plus
Query 1 CGAGAGCCAAGTCAGCAAGAAGCGAACGCACAAACAAAACAAAACCAGAGATTTCGTTAT 60
||||||||||||||||||||| |||||| | | ||||||||||||||||||||||||
Sbjct 1 CGAGAGCCAAGTCAGCAAGAACCGAACG--C--A-GAAACAAAACCAGAGATTTCGTTAT 55
Query 61 CCACTGAAGTTCGTTTGCTTCTGTCAAATTTGCCAAATCGTAACCaaaaaaaGATGGCAG 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 56 CCACTGAAGTTCGTTTGCTTCTGTCAAATTTGCCAAATCGTAACCAAAAAAAGATGGCAG 115
Query 121 CTTCTTCTCCATCTCTCCTTCTACCACTAGGTTCAGCATCTAGAAATGGTCTAACCACCA 180
|||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| ||
Sbjct 116 CTTCTTCTCCATCTCTCCTTCTACCACTAGGTTCAGTATCTAGAAATGGTCTAGCCATCA 175
Query 181 AGAATCCAAATTCATCAAGATATATAGCTGCAAGAGTCATAGCTTCAGAAACAAGAGAGC 240
|||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 176 AGAATCCATATTCATCAAGATATATAGCTACAAGAGTCATAGCTTCAGAAACAAGAGAGC 235
Query 241 AAAGCTGTAAAATCAGTAATCTCTCTAGCCGTAGAGAAGCAATGCTTTTGGTACTCGGCG 300
||||||||||||||| || ||||||||||||||||||||||||||| |||||||||||||
Sbjct 236 AAAGCTGTAAAATCAATAGTCTCTCTAGCCGTAGAGAAGCAATGCTATTGGTACTCGGCG 295
Query 301 TCTCAGGAGGATTATCAATGAGCTCACTTGCGGCGTATGCAGCTGGTTTACCTCCAGAAG 360
| ||||| ||||||||||||||||| |||||||| |||||||| ||||||||||||||||
Sbjct 296 TGTCAGGCGGATTATCAATGAGCTCGCTTGCGGCTTATGCAGCCGGTTTACCTCCAGAAG 355
Query 361 ATAAACCAAGACTCTGTGAAGCAGAATGCGAGAAAGAGCTTGAAAATGTTCCAATGGTAA 420
||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 356 ATAAACCGAGACTCTGTGAAGCCGAATGCGAGAAAGAGCTTGAAAATGTTCCAATGGTAA 415
Query 421 CTACAGAGTCAGGGCTTCAGTATAAGGATATTAAAGTTGGTAGAGGCCCGAGTCCACCGG 480
| ||||| ||||||||||||||||||||||| ||||| |||| |||||| ||||| ||||
Sbjct 416 CCACAGAATCAGGGCTTCAGTATAAGGATATCAAAGTCGGTACAGGCCCTAGTCCCCCGG 475
Query 481 TTGGTTTTCAGGTTGCTGCTAATTATGTGGCTATGGTTCCATCAGGGCAAATATTCGACA 540
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 476 TTGGTTTTCAGGTTGCTGCTAATTATGTGGCTATGGTTCCATCAGGGCAGATATTCGACA 535
Query 541 GTTCTCTGGAGAAAGGTCTACCGTATCTATTTCGCGTTGGCTCTGGCCAGGTGATCAAAG 600
|||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||| |
Sbjct 536 GTTCTCTGGAGAAAGGTCTACCGTATCTGTTTCGTGTTGGGTCTGGCCAGGTGATCAAGG 595
Query 601 GACTTGATGAAGGAATCTTGAGTATGAAAGCTGGTGGCAAACGTAGACTCTACATCCCAG 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 596 GACTTGATGAAGGAATCTTGAGTATGAAAGCTGGTGGCAAACGTAGACTCTACATTCCAG 655
Query 661 GGCCTTTGGCGTTTCCAAAGGGTCTAGTTTCAGCTCCAGGGAGGCCGAGAGTTGCGCCAA 720
|||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 656 GGCCTTTGGCCTTTCCAAAGGGTCTAACTTCAGCTCCAGGGAGGCCGAGAGTTGCGCCAA 715
Query 721 ACAGCCCGGTGATATTTGACGTGAGCTTAGAGTTCATACCAGGTCTCGATTCAGAGGAAG 780
|||| |||||| |||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 716 ACAGTCCGGTGGTATTTGACGTTAGCTTAGAGTTCATTCCAGGTCTCGATTCAGAGGAAG 775
Query 781 AGTGAAACTCTGTTTTTTCAAGTGCAAATTGTAATCTTCCATACACA-A---TTACAAGA 836
|||||||||||||||| |||||||||| |||||||||| ||||||| | ||||||||
Sbjct 776 AGTGAAACTCTGTTTT--CAAGTGCAAAATGTAATCTTCAATACACACACAATTACAAGA 833
Query 837 TTCTATGTATGATATTTATCTCATTGTACT-CATTCATTGAAGAACATCACATTGATTAA 895
||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||
Sbjct 834 TTCTATGTATGATATTTTTCTCATTGTACTTCATTCATTGAAGAACATCACATTGATTAG 893
Query 896 AAACGTCAGTATTTTTCAATTC 917
|||||||||||||||||| |||
Sbjct 894 AAACGTCAGTATTTTTCAGTTC 915
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34158133632
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5