BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G43580.1
Length=981
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483469 jgi|Araly1|483469|fgenesh2_kg.4__2529__AT2G43580.1 1306 0.0
Ahg483470 jgi|Araly1|483470|fgenesh2_kg.4__2530__AT2G43590.1 706 0.0
Ahg485118 jgi|Araly1|485118|fgenesh2_kg.5__1110__AT3G47540.1 255 3e-67
> Ahg483469 jgi|Araly1|483469|fgenesh2_kg.4__2529__AT2G43580.1
Length=863
Score = 1306 bits (707), Expect = 0.0
Identities = 814/865 (94%), Gaps = 10/865 (1%)
Strand=Plus/Plus
Query 8 ACCCAAAGATGGCTCTCACAAAAATCTTCTTAATCCTTCTCCTATCCCTCTTAGGTTTAT 67
||||||||||||||||||||||||||||||||||| ||||||| ||||||||| |||| |
Sbjct 1 ACCCAAAGATGGCTCTCACAAAAATCTTCTTAATCGTTCTCCTCTCCCTCTTATGTTTCT 60
Query 68 ATTCTGAAACCGTCAAATCTCAAAACTGCGATTGCGCCCCTAACCTATGTTGCAGTCAGT 127
| ||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||
Sbjct 61 ACTCTGAAACCGTCAAATCTCAAAACTGCAATTGCGCCCCAAACCTATGTTGCAGTCAGT 120
Query 128 TCGGTTATTGCGGTACCACTGCAGATTACTGTGGTTCTACGTGCCAATCAGGTCCTTGTA 187
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TCGGTTATTGCGGCACCACTGCAGATTACTGTGGTTCTACGTGCCAATCAGGTCCTTGTA 180
Query 188 GAGTCGGTGGACCCCCTACCGGTGCCGGTTTGGTTGGTAATATCGTGACACAAATTTTCT 247
|||||||||||||||| |||||||| ||||||||||||| || |||||||||| |||||
Sbjct 181 GAGTCGGTGGACCCCCAACCGGTGCTGGTTTGGTTGGTAGCATTGTGACACAAAATTTCT 240
Query 248 TTAACAACATTATCAACCAAGCCGGTAATGGATGCGCGGGAAAAAGT-TTTTACACCCGG 306
||||||||||||||||||||||||||||||| ||||| ||||||| | |||||||||||
Sbjct 241 TTAACAACATTATCAACCAAGCCGGTAATGGCTGCGCAGGAAAAA-TATTTTACACCCGC 299
Query 307 GACTCTTTCATTAACGCCACCAATACTTTCCCCAGCTTTGCTAATACCGTTACTAGACGT 366
||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 300 GACTCTTTCATAAACGCCACCAATACTTTCCCCAGCTTTGCTAATACCGTCACTAGGCGT 359
Query 367 GAAATTGCTACCATGTTTGCTCATTTCACTTACGAGACAGGACACTTCTGCTACATAGAA 426
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 GAAATTGCTACCATGTTTGCTCATTTCACTTACGAGACAGGACACTTCTGCTACATAGAA 419
Query 427 GAGATAAACGGGGCGTCACGTGTCATGTGCGACCAGAACAACAGGCAATATCCATGTGCA 486
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 GAGATAAACGGAGCGTCACGTGTCATGTGCGACCAGAACAACAGGCAATATCCATGTGCA 479
Query 487 CCGGCCAAGAGCTACCATGGCCGTGGTCCGCTCCTACTATCATGGAACTTCAACTATGGA 546
|||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 480 CCGGGCAAGAGCTACCATGGTCGTGGTCCGCTCCTACTATCATGGAACTTCAACTATGGA 539
Query 547 GCATGCGGCCAGAGTCTCGGCTTAGACCTCCTACGCCAGCCCGAGCTGGTGAGTAGTAAC 606
||||||||||||||||| ||| | ||||||||||||||||||||||||||||||||||||
Sbjct 540 GCATGCGGCCAGAGTCTTGGCCTCGACCTCCTACGCCAGCCCGAGCTGGTGAGTAGTAAC 599
Query 607 CCAGTCGTGGCTTTCAGGACGGCTCTGTGGTTTTGGATGAAGAGCGTGAGGCCTGTATTG 666
|||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| |||
Sbjct 600 CCAGTCGTGGCTTTCAGGGCGGCTCTGTGGTTTTGGATGAAGAGTGTGAGGCCTGTGTTG 659
Query 667 AACCAGGGATTTGGAGCCACCATAAGAGCCATCAGCGGTTTCGACTGTGACGGTAGGAAC 726
||||||||||||||||||||| |||||||| ||||||||||||||||||| |||||||||
Sbjct 660 AACCAGGGATTTGGAGCCACCGTAAGAGCCGTCAGCGGTTTCGACTGTGATGGTAGGAAC 719
Query 727 TTAGGTGGGGTGAACGCAAGGATTGGCTACTATAGAGACTATTGTGGGCAGCTTGGTTTG 786
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| |
Sbjct 720 TTAGGTGGGGTGAATGCAAGGATTGGATACTATAGAGACTATTGTGGGCAGCTTGGTGTA 779
Query 787 GACCCTGGCGCCAACATAACTTGCTAAAACGCTCTTGGGACATACATG-GCAC--G--A- 840
||||||||||||||||| |||||||||||||||||| |||||||| || | || | |
Sbjct 780 GACCCTGGCGCCAACATCACTTGCTAAAACGCTCTTTGGACATACTTGCG-ACCTGGCAT 838
Query 841 A-AGTATTAAAGGTGAAATAAGAAG 864
| ||| |||||||||||| ||||||
Sbjct 839 AGAGTGTTAAAGGTGAAACAAGAAG 863
> Ahg483470 jgi|Araly1|483470|fgenesh2_kg.4__2530__AT2G43590.1
Length=1031
Score = 706 bits (382), Expect = 0.0
Identities = 683/823 (83%), Gaps = 41/823 (5%)
Strand=Plus/Plus
Query 12 AAAGATGGCTCTCACAAAAATCTTCTTAATCCTTCTCCTATCCCTCTTAGGTTTATATTC 71
||| |||||| |||||||||||| |||| ||||||| || | |||||||||||| |||||
Sbjct 15 AAACATGGCTTTCACAAAAATCTCCTTAGTCCTTCTTCTCTGCCTCTTAGGTTTCTATTC 74
Query 72 TGAAACCGTCAAATCTCAAAACTGCGATTGCGCCCCTAACCTATGTTGCAGTCAGTTCGG 131
|||||||||||| ||||||||||||| |||||| || ||||| |||||||||||||||||
Sbjct 75 TGAAACCGTCAAGTCTCAAAACTGCGGTTGCGCTCCAAACCTCTGTTGCAGTCAGTTCGG 134
Query 132 TTATTGCGGTACC-ACTGCA-G-ATTACTGTGGTTCTACG-TGCCAATCAGGTCCTTGTA 187
||| || |||||| || | | | | ||||| ||| || | |||| ||||||||||||||
Sbjct 135 TTACTGTGGTACCGAC-G-ATGCA-TACTGCGGTGCT-GGATGCCGATCAGGTCCTTGTA 190
Query 188 GAGTCGGTGGACCCCCTACCGGTGCCGGTTTGGTTGGTAATATCGTGACACAAATTTTCT 247
||| | ||||| |||| || ||| || | ||| |||| || ||||||||| |||||
Sbjct 191 GAGGCAGTGGAACCCCGACTGGT---GGATCGGTCGGTAGCATTGTGACACAAGGTTTCT 247
Query 248 TTAACAACATTATCAACCAAGCCGGTAATGGATGCG-CGGGAAAAAGTTTTTACACCCGG 306
|||||||||| ||||||||||| |||||||| |||| |||| ||||| || ||||||||
Sbjct 248 TTAACAACATCATCAACCAAGCTGGTAATGGTTGCGCCGGG-AAAAGATTCTACACCCGT 306
Query 307 GACTCTTTCATTAACGCCACCAATACTTTCCCCAGCTTTGCTAATACCGTTACTAGACGT 366
||||||||| |||||||| | ||||||||||||| |||||| ||| ||||||| ||||||
Sbjct 307 GACTCTTTCGTTAACGCCGCTAATACTTTCCCCAACTTTGCCAATTCCGTTACCAGACGT 366
Query 367 GAAATTGCTACCATGTTTGCTCATTTCACTTACGAGACAGGACACTTCTGCTACATAGAA 426
|||||||||||||||||||||||||||||| ||||||| ||||| |||||||||||||||
Sbjct 367 GAAATTGCTACCATGTTTGCTCATTTCACTCACGAGACCGGACATTTCTGCTACATAGAA 426
Query 427 GAGATAAACGGGGCGTCACGTGTC-ATGTGC--GACCAG-AACAACAGGCAATATCCATG 482
|| || ||||| || |||||| | | ||| || ||| |||| || ||||| |||||
Sbjct 427 GAAATTAACGGAGCATCACGTAACTAC-TGCCAGAGCAGCAACA-CA--CAATACCCATG 482
Query 483 TGCACCGGCCAAGAG-CTACCAT-GGCCGTGGTCCGCTCCTACTATCATGGAACTTCAAC 540
|||||||| ||| || |||| | || ||||||||| ||| |||||||||||||| ||||
Sbjct 483 TGCACCGGGCAA-AGGCTACT-TCGGTCGTGGTCCGATCCAACTATCATGGAACTACAAC 540
Query 541 TATGGAGCATGCGGCCAGAGTCTCGG-CTTAGACCTCCTACGCCAGCCCGAGCTGGT-GA 598
|| ||||| || || || |||||||| ||| ||||| |||||||||||||| || || |
Sbjct 541 TACGGAGCGTGTGGTCAAAGTCTCGGTCTT-GACCTTCTACGCCAGCCCGAACTTGTCG- 598
Query 599 GTAGTAACCCAG-TCGTGGCTTTCAGGACGGCTCTGTGGTTTTGGATGAAGAGCGTGAGG 657
|||| |||||| | || ||||||||||||| | |||||||||||||||| | ||| |||
Sbjct 599 GTAGCAACCCAACT-GTAGCTTTCAGGACGGGTTTGTGGTTTTGGATGAACACCGTAAGG 657
Query 658 CCTGTAT-TGAACCA-GGGATTTGGAGCCACCATAAGAGCCATCAGCGGTTTCGACTGTG 715
|| || | ||||||| ||| |||||||||||||| |||||||||| || | || |||
Sbjct 658 CCGGT-TCTGAACCAAGGG-TTTGGAGCCACCATTAGAGCCATCAATGGAATGGAATGTA 715
Query 716 ACGGTAGG-AACTTA-GGTGGGGTGAACGCAAGGATTGGCTACTATAGAGACTATTGTGG 773
||||| || || || |||| || |||||||||||||| ||||||||||||||||||||
Sbjct 716 ACGGT-GGTAA-TTCCGGTGCAGTCAACGCAAGGATTGGATACTATAGAGACTATTGTGG 773
Query 774 GCAGCTTGGTTTGGACCCTGGCGCC-AACATAACTTGCTAAAA 815
||||||||| |||||||||| || ||| | | |||||||||
Sbjct 774 ACAGCTTGGTGTGGACCCTGGT-CCTAACCTTAGTTGCTAAAA 815
> Ahg485118 jgi|Araly1|485118|fgenesh2_kg.5__1110__AT3G47540.1
Length=785
Score = 255 bits (138), Expect = 3e-67
Identities = 203/235 (86%), Gaps = 2/235 (1%)
Strand=Plus/Plus
Query 232 GTGACACAAATTTTCTTTAACAACATTATCAACCAAGCCGGTAATGGATGCGCGGGAAAA 291
||||||||| |||||||||||||||||||||||||||||||||||| ||| || |||||
Sbjct 115 GTGACACAAGGTTTCTTTAACAACATTATCAACCAAGCCGGTAATGGCTGCACGAGAAAA 174
Query 292 AGTTTTTACACCCGGGACTCTTTCATTAACGCCACCAATACTTTCCCCAGCTTTGCTAAT 351
|| || |||||||| |||||||||||| |||| | |||| ||| |||| |||||||| |
Sbjct 175 AGATTATACACCCGCGACTCTTTCATTGACGCTGCTAATAGTTTTCCCAACTTTGCTAGT 234
Query 352 ACCGTTACTAGACGTGAAATTGCTACCATGTTTGCTCATTTCACTTACGAGACAGGACAC 411
|||||||||||||||||||||||||||||||||||||| ||||| ||||||| || |||
Sbjct 235 TCCGTTACTAGACGTGAAATTGCTACCATGTTTGCTCATGTCACTCACGAGACCGGCCAC 294
Query 412 TTCTGCTACATAGAAGAGATAAACGGGGC-GTCACGTGTCATGTGCGACCAGAAC 465
||||||||||||||||| | ||| | |||||||| || ||||||| |||||
Sbjct 295 TTCTGCTACATAGAAGAAACAAA-GAAAAAGTCACGTGGCAGGTGCGACGAGAAC 348
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36445508652
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5