BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G43590.1
Length=1074
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483470 jgi|Araly1|483470|fgenesh2_kg.4__2530__AT2G43590.1 1692 0.0
Ahg483469 jgi|Araly1|483469|fgenesh2_kg.4__2529__AT2G43580.1 651 0.0
Ahg935267 jgi|Araly1|935267|scaffold_403255.1 387 1e-106
Ahg485118 jgi|Araly1|485118|fgenesh2_kg.5__1110__AT3G47540.1 359 3e-98
> Ahg483470 jgi|Araly1|483470|fgenesh2_kg.4__2530__AT2G43590.1
Length=1031
Score = 1692 bits (916), Expect = 0.0
Identities = 995/1033 (96%), Gaps = 5/1033 (0%)
Strand=Plus/Plus
Query 1 CAAACAATAACACAAAACATGGCTTTCACAAAAATCTCCTTAGTCCTTCTTCTCTGCCTC 60
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 CAAACAATTACACAAAACATGGCTTTCACAAAAATCTCCTTAGTCCTTCTTCTCTGCCTC 60
Query 61 TTAGGTTTCTTTTCTGAAACTGTCAAGTCTCAAAACTGCGGTTGCGCTCCAAACCTCTGT 120
|||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 61 TTAGGTTTCTATTCTGAAACCGTCAAGTCTCAAAACTGCGGTTGCGCTCCAAACCTCTGT 120
Query 121 TGCAGTCAGTTCGGTTACTGTGGTACCGACGATGCATACTGCGGTGTTGGATGCCGATCA 180
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 121 TGCAGTCAGTTCGGTTACTGTGGTACCGACGATGCATACTGCGGTGCTGGATGCCGATCA 180
Query 181 GGTCCTTGTAGAGGTAGTGGAACCCCGACCGGAGGGTCGGTCGGTAGCATTGTGACACAA 240
|||||||||||||| |||||||||||||| || || ||||||||||||||||||||||||
Sbjct 181 GGTCCTTGTAGAGGCAGTGGAACCCCGACTGGTGGATCGGTCGGTAGCATTGTGACACAA 240
Query 241 GGTTTCTTTAACAATATTATCAACCAAGCTGGTAATGGTTGCGCGGGGAAAAGATTCTAC 300
|||||||||||||| || |||||||||||||||||||||||||| |||||||||||||||
Sbjct 241 GGTTTCTTTAACAACATCATCAACCAAGCTGGTAATGGTTGCGCCGGGAAAAGATTCTAC 300
Query 301 ACCCGTGACTCTTTCGTTAACGCCGCTAATACTTTCCCCAACTTTGCCAATTCTGTTACC 360
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 301 ACCCGTGACTCTTTCGTTAACGCCGCTAATACTTTCCCCAACTTTGCCAATTCCGTTACC 360
Query 361 AGACGTGAAATTGCTACCATGTTTGCTCATTTCACTCACGAGACCGGACATTTCTGCTAC 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 AGACGTGAAATTGCTACCATGTTTGCTCATTTCACTCACGAGACCGGACATTTCTGCTAC 420
Query 421 ATAGAAGAGATTAACGGAGCAACACGTAACTACTGCCAGAGCAGCAACACACAATACCCA 480
|||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 421 ATAGAAGAAATTAACGGAGCATCACGTAACTACTGCCAGAGCAGCAACACACAATACCCA 480
Query 481 TGTGCACCGGGAAAAGGCTACTTCGGTCGTGGTCCGATCCAACTATCATGGAACTACAAC 540
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 TGTGCACCGGGCAAAGGCTACTTCGGTCGTGGTCCGATCCAACTATCATGGAACTACAAC 540
Query 541 TACGGAGCGTGTGGTCAAAGTCTCGGTCTTGACCTTCTACGCCAGCCCGAACTTGTGGGT 600
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 541 TACGGAGCGTGTGGTCAAAGTCTCGGTCTTGACCTTCTACGCCAGCCCGAACTTGTCGGT 600
Query 601 AGCAACCCAACTGTAGCTTTCAGGACGGGTTTGTGGTTTTGGATGAATAGCGTAAGGCCG 660
||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct 601 AGCAACCCAACTGTAGCTTTCAGGACGGGTTTGTGGTTTTGGATGAACACCGTAAGGCCG 660
Query 661 GTTCTGAACCAAGGGTTTGGAGCCACCATTAGAGCTATTAATGGAATGGAATGTAACGGT 720
||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 661 GTTCTGAACCAAGGGTTTGGAGCCACCATTAGAGCCATCAATGGAATGGAATGTAACGGT 720
Query 721 GGTAATTCCGGTGCAGTCAACGCAAGGATTGGATACTATAGAGACTATTGTGGACAGCTT 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 GGTAATTCCGGTGCAGTCAACGCAAGGATTGGATACTATAGAGACTATTGTGGACAGCTT 780
Query 781 GGTGTGGACCCTGGTCCTAACCTTAGTTGCTAAAAAAC-CTTTGAACCCAAACACGGACA 839
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 781 GGTGTGGACCCTGGTCCTAACCTTAGTTGCTAAAAAAAACTTTGAACCCAAACACGCACA 840
Query 840 -TATGTGACGTGGCATGTAATAAGTGAGA-TATACTAAAATTTCACACGTATGTACTTTA 897
| |||||||||||| || ||||| || | || | | ||||||||||||||||||||||
Sbjct 841 CT-TGTGACGTGGCACGTGATAAG-GATAATAAATTTTAATTTCACACGTATGTACTTTA 898
Query 898 TGTCGGGTCTCGGTGTTCCCTGCGTCACAAGCAAAAAATTGTTGTAATAAACTTGTGAAA 957
||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 899 TGTCGGGTCTCAGTGTTCCCTGCGTCACAAGCAAAAAATGGTTGTAATAAACTTGTGAAA 958
Query 958 GTGATTTTCTTTTCTTATGTGACTTCTTATGAAAGAGAATTTTAAGATTGATAGATGTTT 1017
||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||
Sbjct 959 GTGATTTTCTTTTCTTATGTGACTTCTTATGGAAGTGAATTTTAAGATTGATAGATGTTT 1018
Query 1018 GAGTTTGACACTT 1030
|||||||||||||
Sbjct 1019 GAGTTTGACACTT 1031
> Ahg483469 jgi|Araly1|483469|fgenesh2_kg.4__2529__AT2G43580.1
Length=863
Score = 651 bits (352), Expect = 0.0
Identities = 671/821 (82%), Gaps = 37/821 (5%)
Strand=Plus/Plus
Query 15 AAACATGGCTTTCACAAAAATCTCCTTAGTCCTTCTTCTCTGCCTCTTAGGTTTCTTTTC 74
||| |||||| |||||||||||| |||| || |||| |||| ||||||| |||||| ||
Sbjct 5 AAAGATGGCTCTCACAAAAATCTTCTTAATCGTTCTCCTCTCCCTCTTATGTTTCTACTC 64
Query 75 TGAAACTGTCAAGTCTCAAAACTGCGGTTGCGCTCCAAACCTCTGTTGCAGTCAGTTCGG 134
|||||| ||||| |||||||||||| |||||| |||||||| |||||||||||||||||
Sbjct 65 TGAAACCGTCAAATCTCAAAACTGCAATTGCGCCCCAAACCTATGTTGCAGTCAGTTCGG 124
Query 135 TTACTGTGGTACCGACGATGC--A-TACTGCGG-TGTTGGATGCCGATCAGGTCCTTGTA 190
||| || || ||| || ||| | ||||| || | | | |||| ||||||||||||||
Sbjct 125 TTATTGCGGCACC-AC--TGCAGATTACTGTGGTTCTACG-TGCCAATCAGGTCCTTGTA 180
Query 191 GAGGT-AGTGGAACCCCGACCGGAG--GG-TCGGTCGGTAGCATTGTGACACAAGGTTTC 246
|| || ||||| |||| ||||| | || | ||| |||||||||||||||||| ||||
Sbjct 181 GA-GTCGGTGGACCCCCAACCGGTGCTGGTTTGGTTGGTAGCATTGTGACACAAAATTTC 239
Query 247 TTTAACAATATTATCAACCAAGCTGGTAATGGTTGCGCGGGGAAAAGATTCTACACCCGT 306
|||||||| |||||||||||||| |||||||| ||||| || |||| ||| ||||||||
Sbjct 240 TTTAACAACATTATCAACCAAGCCGGTAATGGCTGCGCAGGAAAAATATTTTACACCCGC 299
Query 307 GACTCTTTCGTTAACGCCGCTAATACTTTCCCCAACTTTGCCAATTCTGTTACCAGACGT 366
||||||||| | |||||| | ||||||||||||| |||||| ||| | || || || |||
Sbjct 300 GACTCTTTCATAAACGCCACCAATACTTTCCCCAGCTTTGCTAATACCGTCACTAGGCGT 359
Query 367 GAAATTGCTACCATGTTTGCTCATTTCACTCACGAGACCGGACATTTCTGCTACATAGAA 426
|||||||||||||||||||||||||||||| ||||||| ||||| |||||||||||||||
Sbjct 360 GAAATTGCTACCATGTTTGCTCATTTCACTTACGAGACAGGACACTTCTGCTACATAGAA 419
Query 427 GAGATTAACGGAGCAACACGTAAC-TACTGCCAGAGCAGCAACA-CA--CAATACCCATG 482
||||| |||||||| ||||| | | ||| || ||| |||| || ||||| |||||
Sbjct 420 GAGATAAACGGAGCGTCACGTGTCATG-TGC--GACCAG-AACAACAGGCAATATCCATG 475
Query 483 TGCACCGGGAAA-AGGCTACT-TCGGTCGTGGTCCGATCCAACTATCATGGAACTACAAC 540
||||||||| || || |||| | |||||||||||| ||| |||||||||||||| ||||
Sbjct 476 TGCACCGGGCAAGAG-CTACCAT-GGTCGTGGTCCGCTCCTACTATCATGGAACTTCAAC 533
Query 541 TACGGAGCGTGTGGTCAAAGTCTCGGTCTTGACCTTCTACGCCAGCCCGAACTTGTGGGT 600
|| ||||| || || || ||||| || || ||||| |||||||||||||| || ||| ||
Sbjct 534 TATGGAGCATGCGGCCAGAGTCTTGGCCTCGACCTCCTACGCCAGCCCGAGCTGGTGAGT 593
Query 601 AGCAACCCAA-CTGTAGCTTTCAGGACGGGTTTGTGGTTTTGGATGAATAGCGTAAGGCC 659
|| |||||| | || ||||||||| ||| | |||||||||||||||| || || |||||
Sbjct 594 AGTAACCCAGTC-GTGGCTTTCAGGGCGGCTCTGTGGTTTTGGATGAAGAGTGTGAGGCC 652
Query 660 GGT-TCTGAACCAAGGG-TTTGGAGCCACCATTAGAGCTATTAATGGAATGGAATGTAAC 717
|| | ||||||| ||| |||||||||||| | ||||| | | || | || ||| |
Sbjct 653 TGTGT-TGAACCA-GGGATTTGGAGCCACCGTAAGAGCCGTCAGCGGTTTCGACTGTGAT 710
Query 718 GGT-GGTAA-TTCCGGTGCAGTCAACGCAAGGATTGGATACTATAGAGACTATTGTGGAC 775
||| || || || |||| || || |||||||||||||||||||||||||||||||| |
Sbjct 711 GGTAGG-AACTTA-GGTGGGGTGAATGCAAGGATTGGATACTATAGAGACTATTGTGGGC 768
Query 776 AGCTTGGTGTGGACCCTGGT-CCTAACCTTAGTTGCTAAAA 815
|||||||||| |||||||| || ||| | | |||||||||
Sbjct 769 AGCTTGGTGTAGACCCTGGCGCC-AACATCACTTGCTAAAA 808
> Ahg935267 jgi|Araly1|935267|scaffold_403255.1
Length=720
Score = 387 bits (209), Expect = 1e-106
Identities = 344/407 (85%), Gaps = 18/407 (4%)
Strand=Plus/Plus
Query 373 GCTACCATGTTTGCTCATTTCACTCACGAGACCGGACATTTCTGCTACATAGAAGAGATT 432
|||| |||||||||||||||||| |||||||||| || ||||||| ||||||| ||| |
Sbjct 316 GCTAGCATGTTTGCTCATTTCACCCACGAGACCGAACGTTTCTGCAACATAGAGGAGGTA 375
Query 433 AAC-GGAGCAAC-ACGTAACTACTGCCA-GAGCAGCAACA-CACAATACCCATGTGCACC 488
||| ||| | | | || |||| ||| | ||| | ||||| | | |||||||||||||||
Sbjct 376 AACGGGA-CGTCGA-GTGACTATTGCGACGAG-AACAACAGC-CTATACCCATGTGCACC 431
Query 489 GGGAAAAG-GCTACT-TCGGTCGTGGTCCGATCCAACTATCATGGAACTACAACTACGG- 545
||| ||| |||||| | |||||||| ||||||||| ||||||||||||||||||||||
Sbjct 432 GGG-CAAGAGCTACTAT-GGTCGTGGCCCGATCCAATTATCATGGAACTACAACTACGGC 489
Query 546 AGCGTGTGGTCAAAGTCTCGGTCTTGACCTTCTACGCCAGCCCGAACTTGTGGGTAGCAA 605
| | |||||||| ||||||||||| ||||||||||||||||| ||||| || |||||||
Sbjct 490 A-CTTGTGGTCAGAGTCTCGGTCTCGACCTTCTACGCCAGCCGGAACTAGTTAGTAGCAA 548
Query 606 CCCAACTGTAGCTTT-CAGGACGGGTTTGTGGTTTTGGATGAATAGCGTAAGGCCGGTTC 664
| ||||||| ||||| || |||||| |||||||||||||||||||||||||||||||| |
Sbjct 549 CTCAACTGTGGCTTTCCA-GACGGGGTTGTGGTTTTGGATGAATAGCGTAAGGCCGGTAC 607
Query 665 TGAACCAAGGGTTTGGAGCCACCATTAGAGCTATTAATGGAATGGAATGTAACGGTGGTA 724
||||| |||| |||||||||||||||||||| || |||| ||||| ||||| ||||| |
Sbjct 608 TGAACAAAGGATTTGGAGCCACCATTAGAGCCATCAATGCTATGGAGTGTAATGGTGGGA 667
Query 725 ATTCCGGTGCAGTCAACGCAAGGATT-GGATACTATAGAGACTATTG 770
||| ||||| ||||| |||||| || || ||||| | |||||||||
Sbjct 668 ATTTGGGTGCGGTCAATGCAAGGGTTAGG-TACTACACAGACTATTG 713
> Ahg485118 jgi|Araly1|485118|fgenesh2_kg.5__1110__AT3G47540.1
Length=785
Score = 359 bits (194), Expect = 3e-98
Identities = 242/266 (91%), Gaps = 0/266 (0%)
Strand=Plus/Plus
Query 551 GTGGTCAAAGTCTCGGTCTTGACCTTCTACGCCAGCCCGAACTTGTGGGTAGCAACCCAA 610
||||||| || |||||||| ||||||||| ||||||| || |||||||||||||||||||
Sbjct 395 GTGGTCAGAGCCTCGGTCTCGACCTTCTAAGCCAGCCTGAGCTTGTGGGTAGCAACCCAA 454
Query 611 CTGTAGCTTTCAGGACGGGTTTGTGGTTTTGGATGAATAGCGTAAGGCCGGTTCTGAACC 670
|||||||||||| || |||||||| ||||||||| ||||||||||||||||| |||||||
Sbjct 455 CTGTAGCTTTCACGAAGGGTTTGTCGTTTTGGATTAATAGCGTAAGGCCGGTACTGAACC 514
Query 671 AAGGGTTTGGAGCCACCATTAGAGCTATTAATGGAATGGAATGTAACGGTGGTAATTCCG 730
|||| ||||||||||| || ||||| || ||||| ||||||||||||||||| ||||| |
Sbjct 515 AAGGATTTGGAGCCACTATAAGAGCCATCAATGGGATGGAATGTAACGGTGGGAATTCAG 574
Query 731 GTGCAGTCAACGCAAGGATTGGATACTATAGAGACTATTGTGGACAGCTTGGTGTGGACC 790
|||| ||||||||||||||||| |||||||||||||||||| |||| ||||||||||| |
Sbjct 575 GTGCTGTCAACGCAAGGATTGGGTACTATAGAGACTATTGTAGACAACTTGGTGTGGATC 634
Query 791 CTGGTCCTAACCTTAGTTGCTAAAAA 816
||||||||||||||||||||||||||
Sbjct 635 CTGGTCCTAACCTTAGTTGCTAAAAA 660
Score = 285 bits (154), Expect = 5e-76
Identities = 221/253 (87%), Gaps = 5/253 (2%)
Strand=Plus/Plus
Query 180 AGGTCCTTGTAGAGGTAG-TGGAACCCCGA-C-C-GGAGGGTCGGTCGGTAGCATTGTGA 235
||||||||||| |||| | ||||||| | | | | || || || ||| ||||||||||||
Sbjct 60 AGGTCCTTGTATAGGT-GTTGGAACCACTAGCTCTGGTGGATCAGTCAGTAGCATTGTGA 118
Query 236 CACAAGGTTTCTTTAACAATATTATCAACCAAGCTGGTAATGGTTGCGCGGGGAAAAGAT 295
||||||||||||||||||| |||||||||||||| |||||||| ||| || | |||||||
Sbjct 119 CACAAGGTTTCTTTAACAACATTATCAACCAAGCCGGTAATGGCTGCACGAGAAAAAGAT 178
Query 296 TCTACACCCGTGACTCTTTCGTTAACGCCGCTAATACTTTCCCCAACTTTGCCAATTCTG 355
| |||||||| ||||||||| || |||| ||||||| ||| ||||||||||| | ||| |
Sbjct 179 TATACACCCGCGACTCTTTCATTGACGCTGCTAATAGTTTTCCCAACTTTGCTAGTTCCG 238
Query 356 TTACCAGACGTGAAATTGCTACCATGTTTGCTCATTTCACTCACGAGACCGGACATTTCT 415
|||| |||||||||||||||||||||||||||||| |||||||||||||||| || ||||
Sbjct 239 TTACTAGACGTGAAATTGCTACCATGTTTGCTCATGTCACTCACGAGACCGGCCACTTCT 298
Query 416 GCTACATAGAAGA 428
|||||||||||||
Sbjct 299 GCTACATAGAAGA 311
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39990939933
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5