BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G43600.1
Length=822
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483471 jgi|Araly1|483471|fgenesh2_kg.4__2531__AT2G43600.1 1127 0.0
> Ahg483471 jgi|Araly1|483471|fgenesh2_kg.4__2531__AT2G43600.1
Length=810
Score = 1127 bits (610), Expect = 0.0
Identities = 677/709 (95%), Gaps = 5/709 (1%)
Strand=Plus/Plus
Query 117 ATGGGGTTTCTGTGGCACCAAAGATGAATACTGCGGAtttttttGTTTCAGTGGCCCTTG 176
||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 104 ATGGGGTTTCTGTGGCACCAAAGATGATTACTGCGGATTCTTTTGTTTCAGTGGCCCTTG 163
Query 177 CAATATCAAGGGAAAATCATACGGATACGACTACAACGTTGATGCCGGTCCACGTGGTAA 236
|||||||||||||||||| |||||||| ||||||||||| |||||| ||||||||||||
Sbjct 164 CAATATCAAGGGAAAATCCTACGGATATGACTACAACGTGGATGCC--TCCACGTGGTAA 221
Query 237 AATAGAAACCGTTATCACATCAGCGTTGTTCGATAGCATCATGAGCAAAGTCGAAAGCAA 296
|||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 222 AATAGAGACCGTTATCACACCAGCGTTGTTCGATAGCATCATGAGCAAAGTCGAAAGCAA 281
Query 297 CTGCTCGGCAAAAGGATTCTACACTTATGAGGCTTTCATTACTGCTTTCAAATCTTTTGG 356
||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 282 CTGCTCGGCAAAAGGATTCTACACTTATGAGGCTTTCATCACTGCTTTCAAATCGTTTGG 341
Query 357 AGCTTACAAAGGAAAGGTGGCTAAACGTGAGATCGCTGCTATATTGGCTCATTTCTCATA 416
|||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 342 AGCTTACAAAGGAAAGGTGGCTAAACGTGAAATCGCTGCCATATTGGCTCATTTCTCATA 401
Query 417 CGGATCTAAAAGTTTTTGTTACAAAGAAGAAATATCGAACGAGAGATATTGTTCAAAGAG 476
|||||||||||||||||| |||||||||||||||| |||||||| || |||||||||||
Sbjct 402 TGGATCTAAAAGTTTTTGTGACAAAGAAGAAATATCAAACGAGAGGTACTGTTCAAAGAG 461
Query 477 CAAGAAGTACCCTTGTGAACCGGGGAAAAACTACTATGGTCGTGGTTTGCTACAATCAAT 536
||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||
Sbjct 462 CAAGAAGTACCCTTGTGAACCGGGGAAAAACTACTTTGGTCGCGGTTTGCTACAATCAAT 521
Query 537 CACATGGAACGAGTATTACGGTGC--C-GGCAAGCACCTCGGGCTACCTCTACTGAAGGA 593
|||||||||||||||||| ||||| | ||||||||||||||||||||||| |||||||
Sbjct 522 CACATGGAACGAGTATTATGGTGCTGCCGGCAAGCACCTCGGGCTACCTCTGTTGAAGGA 581
Query 594 TCCAGATCTGGTGTCTCGTAGTCCAGAAGTTGCTTTCAAATTCGCAATGTGGTTCTGGAA 653
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 582 TCCAGATCTGGTGGCTCGTAGTCCAGAAGTTGCTTTCAAATTCGCAATGTGGTTCTGGAA 641
Query 654 TAGAAACGTGCGTCCCGCTTTGTACTTAGGATTTGGAGAAATCACAAAGAGAGTTGATGG 713
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 642 TAGAAACGTGCGTCCGGCTTTGTACTTAGGATTTGGAGAAATCACAAAGAGAGTTGATGG 701
Query 714 CCGTGAATGTGGTAACTGGCGTCGCGATGATACGAAGAACAAAGTTAAGCAATACATAGA 773
|||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 702 CCGTGAATGTGGTAACTGGCGTCGTGATGATACGAAGAACAAGGTTAAGCAATACATAGA 761
Query 774 GTTCTGCGAGATGCTTGGAGTAACTCCTGATCAAGGTCTCGATTGTTAA 822
|||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 762 GTTCTGCGAGATGCTTGGGGTAACTCCTGATCAAGGTCTAGATTGTTAA 810
Score = 111 bits (60), Expect = 6e-24
Identities = 63/64 (98%), Gaps = 1/64 (2%)
Strand=Plus/Plus
Query 22 TTTTCCCTCTTCATTCTAGCAATTTTGGCCGAGACCGTGTTCTCGCAGAACTGCATGGAT 81
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 41 TTTT-CCTCTTCATTCTAGCAATTTTGGCCGAGACCGTGTTCTCGCAGAACTGCATGGAT 99
Query 82 ACTA 85
||||
Sbjct 100 ACTA 103
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30383964849
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5