BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G43610.1
Length=1104
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483472 jgi|Araly1|483472|fgenesh2_kg.4__2532__AT2G43610.1 1720 0.0
> Ahg483472 jgi|Araly1|483472|fgenesh2_kg.4__2532__AT2G43610.1
Length=1094
Score = 1720 bits (931), Expect = 0.0
Identities = 1046/1099 (95%), Gaps = 17/1099 (2%)
Strand=Plus/Plus
Query 2 CACAACTCTCCCCT-CAAAACATTCCATCAAAG---G-aa-aaaaaTGGCGACACAAAAT 55
||||||||| |||| |||||||||||||||||| | || |||||||||||||||||||
Sbjct 1 CACAACTCT-CCCTCCAAAACATTCCATCAAAGAAAGAAAGAAAAATGGCGACACAAAAT 59
Query 56 GCGA-TTCTGAAAAAAGCTCTCATCATTTTCCTCTTTACTCTAACCATCATGACAGGAAC 114
| || ||| |||||| |||||||||||||||||||| ||||||||||||||||||| |||
Sbjct 60 GGGATTTC-GAAAAACGCTCTCATCATTTTCCTCTTCACTCTAACCATCATGACAGAAAC 118
Query 115 CGCGTTTTCACAAAACTGTGGTACAAACGGGTGTAAAGGCAACATGTGCTGCAGCAGGTG 174
|||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||
Sbjct 119 CGCGTTTTCACAAAACTGCGGTACAACCGGGTGTAAAGGCAACATGTGCTGCAGCAGGTG 178
Query 175 GGGATATTGTGGTACCACAAAAGCCTACTGTGGCACTGGGTGCCAGAGTGGACCTTGCAA 234
||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 179 GGGATATTGTGGTACCACAAAAGCCTACTGTGGCACTGGCTGTCAGAGTGGACCTTGCAA 238
Query 235 CTCTAAACCTAAACCTACTCCGACTCCAAGCGGTAGTGGCGGTCTAAATGCTGGTCCTCG 294
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 239 CTCTAAACCTAAACCTACTCCGACTCCCAGCGGTAGTGGCGGTCTAAATGCTGGTCCTCG 298
Query 295 TGGTACCATAGCAAGCGTTATCACACCAGCGTTCTTCAACAGCATCATGAGTAAAGTCGG 354
|||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 299 TGGTACCATAGCGAGCGTTGTCACACCAGCGTTCTTCAACAGCATCATGAGTAAAGTCGG 358
Query 355 AAGCGGTTGCCCAGCGAAAGGGTTTTACACTCGCCAGGCTTTCATCGCAGCCGCTGAATC 414
|||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 359 CAGCGGTTGCCCAGCCAAAGGGTTTTACACTCGCCAGGCTTTCATCGCGGCCGCTGAATC 418
Query 415 GTTCGCAGCCTACAAAGGAACTGTTGCTAAGCGTGAGATTGCCGCCATGTTGGCTCAGTT 474
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 CTTCGCAGCCTACAAAGGAACTGTTGCTAAGCGTGAGATTGCCGCCATGTTGGCTCAGTT 478
Query 475 CTCTCACGAATCTGGAAGTTTTTGTTACAAAGAAGAAATAGCCAGAGGAAGGTACTGCTC 534
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 479 CTCTCACGAATCTGGAAGTTTTTGTTACAAAGAAGAAATAGCCAGAGGAAGGTATTGTTC 538
Query 535 ACCAAGCACAACATATCCTTGTCAACCCGGAAAGAACTACTATGGTCGCGGTCCGATCCA 594
||||||||||||||||||||||||||| || ||||||||||| ||||| || ||||||||
Sbjct 539 ACCAAGCACAACATATCCTTGTCAACCGGGCAAGAACTACTACGGTCGTGGCCCGATCCA 598
Query 595 AATCACATGGAACTACAACTATGGTGCAGCCGGAAAGTTCCTTGGACTTCCTCTCTTGAA 654
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 AATCACATGGAACTACAACTATGGTGCAGCCGGAAAGTTCCTTGGACTTCCTCTCTTGAC 658
Query 655 GGACCCAGATATGGTGGCTCGTAGCCCAACTGTGGCTTTCCAGTGTGCCATGTGGTTTTG 714
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 659 GGACCCAGATATGGTGGCTCGTAGCCCAACTGTGGCTTTCAAGTGTGCCATGTGGTTTTG 718
Query 715 GAACAAGAATGTGCGTCCGGTTTTGAGCCAAGGGTTTGGTGCAACCACGAGGAGGATCAA 774
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 GAACAAGAATGTGCGTCCGGTTTTGAGCCAAGGGTTTGGTGCAACCACGAGGAGGATCAA 778
Query 775 CGGTGGTGAATGTAATGGTGGGCGTCCAGCTGCAGTGCAGAGCAGGGTTAACCATTACTT 834
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 CGGTGGTGAATGTAACGGTGGGCGTCCAGCTGCAGTGCAGAGCAGGGTTAACCATTACTT 838
Query 835 GGACTTCTGCAAGAAGCTTGGGGTCACTCCTGGAACCAATCTCTCATGTTGAAGACACTA 894
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 GGACTTCTGCAAGAAGCTTGGGGTCACTCCTGGAACCAATCTCTCATGTTGAAGACACTA 898
Query 895 CTAGTTTATGAGGGTTTT-TCATTAATGTCGTCTGG-TTAAGAATTTCGTATCGAATAA- 951
||| |||||||||||||| | ||||||||||| ||| ||||||||||||| ||||||||
Sbjct 899 CTACTTTATGAGGGTTTTCT-ATTAATGTCGTGTGGGTTAAGAATTTCGTGTCGAATAAA 957
Query 952 TAAAGTGAAGTCGAAAATACTAGAACTTATAAAATTTGTAAGAGATTAGAAGTTATATTG 1011
||||||||||||||||||||||||| |||||||| | |||||||||||||||| ||||||
Sbjct 958 TAAAGTGAAGTCGAAAATACTAGAATTTATAAAACT-GTAAGAGATTAGAAGTCATATTG 1016
Query 1012 TGTGGTTGATGTCTCTTAAGGTAACT-ATATTGTGTGTT-GTTTGTATCCGCTCGCTAGC 1069
|||||||| ||||||||||||||||| | ||||||||| |||||||||||| |||||||
Sbjct 1017 TGTGGTTGGTGTCTCTTAAGGTAACTGAG-TTGTGTGTTTGTTTGTATCCGCGCGCTAGC 1075
Query 1070 ATAAGTAATAAAGATGGAA 1088
|||| ||||||| ||||||
Sbjct 1076 ATAACTAATAAAAATGGAA 1094
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41134627443
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5