BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G43630.1
Length=1128
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483474 jgi|Araly1|483474|fgenesh2_kg.4__2534__AT2G43630.1 1583 0.0
Ahg486428 jgi|Araly1|486428|fgenesh2_kg.5__2420__AT3G59640.2 320 1e-86
> Ahg483474 jgi|Araly1|483474|fgenesh2_kg.4__2534__AT2G43630.1
Length=1028
Score = 1583 bits (857), Expect = 0.0
Identities = 960/1009 (95%), Gaps = 9/1009 (1%)
Strand=Plus/Plus
Query 51 aaaaaaTTGAATTCTTTCTCTCCAAGCGA-AACTAGGGTTTCGAAAG-TCTCTGTCTCAT 108
||||||| ||||||||||||||||||||| |||||||| |||| || |||||||||| |
Sbjct 27 AAAAAATCGAATTCTTTCTCTCCAAGCGACAACTAGGGCTTCG--AGTTCTCTGTCTCGT 84
Query 109 CAAAGCTTCGAAAAGAAAGTGATTGCATTAAGAGAAACATTGGGATAAAAGATGAGCTTT 168
||| |||||||||||||||||||||||||||||||| ||||||||| ||||||||||||
Sbjct 85 CAAGGCTTCGAAAAGAAAGTGATTGCATTAAGAGAAGCATTGGGAT-TAAGATGAGCTTT 143
Query 169 ACTCAGGCTAATTGTTTTCGACCATCCTACTATCCTGCAAGGATAACACGACCAAATTGC 228
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 144 ACTCAGGCTAATTGTTTTCGACCATCTTACTATCCTGCAAGGATAACACGACCAAATTGT 203
Query 229 ATCTCCAGTGTACCTATTAGGTCTTCAGTACGCTTTGATCACTTCCCGCGTACCTCGTTT 288
||||||||||| | |||||||||||||||||||||||| ||| |||||||||||| |||
Sbjct 204 GTCTCCAGTGTATCAATTAGGTCTTCAGTACGCTTTGATTACTGCCCGCGTACCTCATTT 263
Query 289 ACTCTTCGAGCTACTGCTGCAGTGTCTACTCAGTTTTCGCCTCTTCTTGATCATCGCCGT 348
|| |||||||| |||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 264 ACGCTTCGAGCAACTGCTGCAGTGTCTACTCAGTTTTCGCCTCTTCTTAATCATCGCCGT 323
Query 349 CGTTTACCTACTGGGAAATCGAAACAAAGTTCTGCTGTGTGCTTATTTGGTGGGAAAGAT 408
||||||||| |||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct 324 CGTTTACCTGCTGGGAAATCGAAACAAAGTCCGGCTGTGTGCTTATTTGGTGGGAAAGAT 383
Query 409 AAACCTGATGGTAGTGATGAGATATCGCCATGGAAAGCAATAGAGAAAGCTATGGGGAAG 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 384 AAACCTGATGGTAGTGATGAGATATCGCCATGGAAAGCAATAGAGAAAGCTATGGGGAAG 443
Query 469 AAATCGGTTGAAGATATGTTGCGAGAGCAGATACAGAAGAAAGACTTTTATGATACTGAC 528
||||| ||||||||||||||||| ||||||||||| |||||||| |||||||||||||||
Sbjct 444 AAATCAGTTGAAGATATGTTGCGGGAGCAGATACAAAAGAAAGATTTTTATGATACTGAC 503
Query 529 AGTGGCGGCAACATGCCTCCACGTGGAGGAGGCAGTGGTGGCGGTGGTGGAAATGGTGAG 588
|| ||||||||||| ||||||||| ||||||||||||||| |||||||||||||||||
Sbjct 504 AGCGGCGGCAACATTCCTCCACGT---GGAGGCAGTGGTGGCAGTGGTGGAAATGGTGAG 560
Query 589 GAGCGTCCTGAAGGGTCAGGAGGAGAAGATGGTGGTCTTGCTGGGATCGCAGATGAAACT 648
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 561 GAGCGTCCTGAAGGGTCAGGAGGAGAAGATGGTGGTCTTGCTGGGATTGCAGATGAAACC 620
Query 649 TTGCAAGTGGTTTTGGCGACCTTAGGCTTCATCTTTTTGTACACATACATTATCACTGGG 708
||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 621 TTGCAAGTGGTTTTGGCAACCTTAGGCTTCATCTTTTTGTACACCTACATTATCACTGGG 680
Query 709 GAGGAATTGGTCAAGCTTGCAAGGGATTACATTAGGTTTCTTATGGGAAGACCTAAGACT 768
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 681 GAGGAATTGGTCAAGCTTGCAAGGGATTACATTAGGTTTCTTATGGGAAGACCTAAGACT 740
Query 769 GTTCGATTGACCCGAGCCATGGATAGTTGGAACGGATTCTTGGAGAAGATGTCGAGGCAA 828
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 741 GTTCGATTGACCCGAGCCATGGATGGTTGGAACGGATTCTTGGAGAAGATGTCGAGGCAA 800
Query 829 AGAGTGTATGATGAGTATTGGCTAGAAAAGGCGATCATCAACACACCAACCTGGTATGAT 888
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 801 AGAGTGTATGATGAGTATTGGCTAGAAAAGGCGATCATCAACACGCCAACCTGGTATGAC 860
Query 889 AGCCCTGAGAAGTACAGACGTGTTATCAAGGCTTATGTTGATTCAAATTCTGATGAAGCT 948
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 861 AGCCCCGAGAAGTACAGACGTGTTATCAAGGCTTATGTGGATTCAAATTCTGATGAAGCT 920
Query 949 TATGTGGAATCAAATTCTGATGAGGTATCTTACTAGGTTAGGAACAGGAAGAGATCCATA 1008
|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 921 TATGTGGACTCAAATTCTGATGAAGTATCTTACTAGGTTAGGAACAGGAAGAGATCCATA 980
Query 1009 ATAACAATTGAGttttttttCTTAGTGTTTGAAATTTAGAATCAGTTTC 1057
||||||||||||||||||| |||| ||||||||||| ||||||||||||
Sbjct 981 ATAACAATTGAGTTTTTTT-CTTATTGTTTGAAATTAAGAATCAGTTTC 1028
> Ahg486428 jgi|Araly1|486428|fgenesh2_kg.5__2420__AT3G59640.2
Length=1020
Score = 320 bits (173), Expect = 1e-86
Identities = 455/583 (78%), Gaps = 51/583 (9%)
Strand=Plus/Plus
Query 373 CAAAGTTCTGCTGTGTGCTTATTTGGTGGGAAAGATAAACCTGATGGTAGTGATGAG--A 430
||| || ||| | |||||||| |||||||||| ||||| || | || ||| | ||| |
Sbjct 358 CAAGGTCCTGTTTTGTGCTTACTTGGTGGGAAGGATAAGTCTAACGGGAGTAACGAGATA 417
Query 431 T-ATCGCCATGGAAAGCAATAGAGAAAGCTATGGGGAAGAAATCGGTTGAAGATATGTTG 489
| ||| ||||||||||| || ||||| || ||||||||||||||||||||||||||||||
Sbjct 418 TCATCACCATGGAAAGCTATTGAGAATGCAATGGGGAAGAAATCGGTTGAAGATATGTTG 477
Query 490 CGAGAGCAGATACAGAAGAAAGACTTTTATGATACTGACAGTGGCGGCAACATGCCTCCA 549
|| ||||||||||| ||||||||| | ||| | ||||| | ||||||
Sbjct 478 CGTGAGCAGATACAAAAGAAAGAC----A-----CTG---G---CGGCAT--T-CCTCCA 519
Query 550 CGTGGAGGAGGCAGTGGTGGCGGTGGTGGAAATGGTGAGGA-----GCGTCCTGAAGGGT 604
| |||||||| || || || || ||| ||||||||| ||| | ||| || ||| |
Sbjct 520 CAAGGAGGAGG-AG-GG-GGTGGCGGTAGAAATGGTG-GGAATAATGGGTC-TGGAGGCT 574
Query 605 CAGGAGGAGAAGATGGTGGTCTTGCTGGGATCGCAGATGAAACTTTGCAAGTGGTTTTGG 664
|| |||||||||||||||||||||| | | | ||||||||| |||||||||| || |
Sbjct 575 CATCAGGAGAAGATGGTGGTCTTGCTAGTTTTGGGGATGAAACTCTGCAAGTGGTATTAG 634
Query 665 CGACCTTAGGCTTCATCTTTTTGTACA-CATACATTATCA-CTGGGGAGGAATTGGTCA- 721
| |||||||||||||||||| |||||| | ||||| |||| | |||||||| ||| ||
Sbjct 635 CAACCTTAGGCTTCATCTTTCTGTACATC-TACATCATCAAC-GGGGAGGAGTTGTTCCG 692
Query 722 AGCTTGCAAGGGATTACATTAGGTTTCTTATGGGAAGACCTAAGACTGTTCGATTGACCC 781
| |||||||| ||||||||||||| ||||| ||| |||| |||| |||| | ||||||
Sbjct 693 A-CTTGCAAGAGATTACATTAGGTACCTTATAGGACGACCCAAGAGTGTTAGGCTGACCC 751
Query 782 GAGCCATGGATAG-TTGGAACGGATTCTTGGAGAAG-ATGTCGAGGCAAAGAGTGTATGA 839
||| ||||| || ||||| ||||||| |||| | ||||||||| ||||||||||| |
Sbjct 752 GAGTTATGGA-AGGTTGGAGTAGATTCTTCGAGA-GTATGTCGAGGAAAAGAGTGTATAA 809
Query 840 TGAGTATTGGCTAGA-A--AAGGCGATCATCAACACACCAACCTGGTATGATAGCCCTGA 896
||||| |||||| | | ||| ||||||||||||| | ||||||||||||| ||| |
Sbjct 810 CGAGTACTGGCTAAAGATCAAG-CGATCATCAACACGTCTACCTGGTATGATAACCCGG- 867
Query 897 G-AAGTACAGACGTGT-TATCA-AGGCTTATGTTGATTCAAAT 936
| || |||||||| | | | | | |||||||||||||||||
Sbjct 868 GCAAATACAGACGCATCT-TGAGAT-CTTATGTTGATTCAAAT 908
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42049577451
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5