BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G43640.1
Length=746
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483476 jgi|Araly1|483476|fgenesh2_kg.4__2536__AT2G43640.1 883 0.0
> Ahg483476 jgi|Araly1|483476|fgenesh2_kg.4__2536__AT2G43640.1
Length=654
Score = 883 bits (478), Expect = 0.0
Identities = 612/673 (91%), Gaps = 24/673 (4%)
Strand=Plus/Plus
Query 1 ATACCCGTCTTTTGATTTGTGGCGACTTCCTTTTTACCGAAGAGACTCCTCCGGCCGGTG 60
|||| |||||||||| |||||||||| |||||||||||| | | ||||||||||||||
Sbjct 1 ATACTCGTCTTTTGACTTGTGGCGAC-TCCTTTTTACCG-A-A-TTTCCTCCGGCCGGTG 56
Query 61 AGTTTTCGGACGCAGATCATCATCAG--AT-TCTTGTCTCTCTCTGTTATCTGAGTGATA 117
|||||| ||| ||| || || || | | | || | | |||| || ||||||||||||
Sbjct 57 AGTTTTTGGAAGCA-CTC-TC-TCTGTTGTGTTTTATTTTTCTCAGTGATCTGAGTGATA 113
Query 118 AGAAGTATTTTC-AGTGCTTGAGGATCTGCAA-AAGATATCCATCTGCGGTTTAACAATG 175
|||||| |||| || ||||||||||||| || || ||||||||||||||||||||||||
Sbjct 114 AGAAGT-CTTTCGAGAGCTTGAGGATCTG-AAGAAAATATCCATCTGCGGTTTAACAATG 171
Query 176 GTTCTATTACAGTTGGATCCATTCCTCAATGAACTCACGAGCATGTTTGAGAAAAGCAAA 235
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 172 GTTCTATTACAGTTGGATCCATTCCTCAATGAACTCACGAGCATGTTTGAGAAAAGCAAA 231
Query 236 GAGAAGGGTTCTGTGTGGGTTACTTTGAAAAGATCATCTCTCAAGTCTAAGGTGCAGAAG 295
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 232 GAGAAGGGTTCTGTGTGGGTTACTTTGAAAAGATCATCTCTGAAGTCTAAGGTGCAGAAG 291
Query 296 AGGAAACTGAGCTCAGTTGGAGAATCCATTGAATACAGATGCCTTATTCGAGCAACCGAT 355
|||||||| || |||| |||||||||||||||||||||||||||||| |||||||| |||
Sbjct 292 AGGAAACTAAGTTCAGCTGGAGAATCCATTGAATACAGATGCCTTATCCGAGCAACTGAT 351
Query 356 GGAAAGAAAACTGTTTCTACTTCGGTTGGTGCTAAGGATCACCAGAGATTTCAAGCATCA 415
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 352 GGAAAGAAAACAGTTTCTACTTCGGTTGGTGCTAAGGATCACCAGAGATTTCAAGCATCA 411
Query 416 TATGCCACCATTCTTAAGGCCCACATGACTGCTTTgaagaagagggaaaggaaagaccgg 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 412 TATGCCACCATTCTTAAGGCCCACATGACTGCTTTGAAGAAGAGGGAAAGGAAAGACCGG 471
Query 476 aagaaatcgacagaggcagagaagaaagaaagCACTTCAACCACTAAATCTAAGAAACTT 535
|||||| | ||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 472 AAGAAACCCACAGAGGCAGAGAAGAAAGAAGGCGCTTCAACCACTAAATCTAAGAAACTT 531
Query 536 TGATTTCTCCTTTTGTGTTTCTCATTGATTTGCAATTGCTGCTTAAGAGTTGAATTTTGA 595
||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 532 TGATTTCTCCTCTTGTGTTTCTCATTGATTTGCAATTGCTGCTTAAGAATTGAATTTTGA 591
Query 596 AAGCTATTGAAAGATCTAAAAGATTTTGACTTGTGTTATAATAGAGATTTTGGTTTGCAT 655
||| || ||||||||||||||||| ||| | |||||||||||||| |||| |
Sbjct 592 AAG--AT--------CTAAAAGATTTTGACTTATGTCACAATAGAGATTTTGGCTTGCGT 641
Query 656 TTGCTTTTCCCTC 668
|||| ||||||||
Sbjct 642 TTGCCTTTCCCTC 654
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27486623157
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5